EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000022129 (Gene tree)
Gene ID: 406277
Gene Symbol: rbm4.3
Alias: fb55c03|fb78a04|fj36h04|wu:fb55c03|wu:fb78a04|wu:fj36h04|zgc:56141|zgc:77000
Full Name: RNA binding motif protein 4.3
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 3506 bases
Position: chr7:22792132-22795637
Accession: ZDB-GENE-040426-1938
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000117497	RRM_5	PF13893.6	3.1e-13	1	2
ENSDARP00000117497	RRM_5	PF13893.6	3.1e-13	2	2
ENSDARP00000148114	RRM_5	PF13893.6	3.1e-13	1	2
ENSDARP00000148114	RRM_5	PF13893.6	3.1e-13	2	2
ENSDARP00000117497	RRM_1	PF00076.22	1.2e-27	1	2
ENSDARP00000117497	RRM_1	PF00076.22	1.2e-27	2	2
ENSDARP00000148114	RRM_1	PF00076.22	1.2e-27	1	2
ENSDARP00000148114	RRM_1	PF00076.22	1.2e-27	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000135207	-	2318	XM_005172266	ENSDARP00000117497	341 (aa)	XP_005172323	Q6NXC1
ENSDART00000146801	-	296	-	ENSDARP00000113820	7 (aa)	-	A0A1Y7AIH4
ENSDART00000184407	-	1758	-	ENSDARP00000148114	341 (aa)	-	Q6NXC1

Gene Model

Click here to download ENSDARG00000022129's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000022129's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000022129	rbm4.3	50	51.136	ENSDARG00000036386	rbm4.1	79	56.522

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000022129	rbm4.3	97	69.795	ENSAPOG00000002953	rbm4.3	95	73.669	Acanthochromis_polyacanthus
ENSDARG00000022129	rbm4.3	97	71.429	ENSAPOG00000002991	rbm4.3	94	71.601	Acanthochromis_polyacanthus
ENSDARG00000022129	rbm4.3	97	68.035	ENSACIG00000021311	-	95	70.414	Amphilophus_citrinellus
ENSDARG00000022129	rbm4.3	100	69.565	ENSACIG00000021295	rbm4.3	95	67.761	Amphilophus_citrinellus
ENSDARG00000022129	rbm4.3	97	71.471	ENSAOCG00000008015	rbm4.3	95	73.591	Amphiprion_ocellaris
ENSDARG00000022129	rbm4.3	99	71.014	ENSAOCG00000007992	rbm4.3	95	72.424	Amphiprion_ocellaris
ENSDARG00000022129	rbm4.3	97	70.882	ENSAPEG00000017324	rbm4.3	95	72.997	Amphiprion_percula
ENSDARG00000022129	rbm4.3	99	71.304	ENSAPEG00000017288	rbm4.3	95	72.424	Amphiprion_percula
ENSDARG00000022129	rbm4.3	97	72.059	ENSATEG00000019375	rbm4.3	95	73.294	Anabas_testudineus
ENSDARG00000022129	rbm4.3	97	64.602	ENSATEG00000019395	rbm4.3	94	65.868	Anabas_testudineus
ENSDARG00000022129	rbm4.3	97	67.742	ENSACLG00000010620	-	95	71.893	Astatotilapia_calliptera
ENSDARG00000022129	rbm4.3	97	70.833	ENSACLG00000010642	rbm4.3	94	71.125	Astatotilapia_calliptera
ENSDARG00000022129	rbm4.3	62	82.547	ENSAMXG00000040224	rbm4.3	81	80.513	Astyanax_mexicanus
ENSDARG00000022129	rbm4.3	99	67.806	ENSCSEG00000013659	rbm4.3	95	66.568	Cynoglossus_semilaevis
ENSDARG00000022129	rbm4.3	97	64.912	ENSCVAG00000008508	rbm4.3	95	65.680	Cyprinodon_variegatus
ENSDARG00000022129	rbm4.3	99	67.887	ENSELUG00000022168	rbm4.3	95	66.862	Esox_lucius
ENSDARG00000022129	rbm4.3	100	71.751	ENSELUG00000022155	rbm4.3	96	71.765	Esox_lucius
ENSDARG00000022129	rbm4.3	100	71.225	ENSELUG00000022150	rbm4.3	95	68.060	Esox_lucius
ENSDARG00000022129	rbm4.3	80	68.817	ENSFHEG00000023137	rbm4.3	87	68.571	Fundulus_heteroclitus
ENSDARG00000022129	rbm4.3	97	58.997	ENSGAFG00000001935	rbm4.3	94	61.862	Gambusia_affinis
ENSDARG00000022129	rbm4.3	99	63.714	ENSGACG00000019980	rbm4.3	98	63.401	Gasterosteus_aculeatus
ENSDARG00000022129	rbm4.3	97	67.742	ENSHBUG00000009020	-	95	71.893	Haplochromis_burtoni
ENSDARG00000022129	rbm4.3	97	71.131	ENSHBUG00000009051	rbm4.3	94	71.429	Haplochromis_burtoni
ENSDARG00000022129	rbm4.3	95	64.776	ENSHCOG00000010349	rbm4.3	94	64.478	Hippocampus_comes
ENSDARG00000022129	rbm4.3	99	74.640	ENSIPUG00000022943	RBM4B	95	73.134	Ictalurus_punctatus
ENSDARG00000022129	rbm4.3	99	65.057	ENSKMAG00000017468	rbm4.3	95	65.672	Kryptolebias_marmoratus
ENSDARG00000022129	rbm4.3	97	69.795	ENSLBEG00000001071	-	95	70.448	Labrus_bergylta
ENSDARG00000022129	rbm4.3	53	70.588	ENSLBEG00000001025	rbm4.3	82	72.626	Labrus_bergylta
ENSDARG00000022129	rbm4.3	95	62.155	ENSLOCG00000002755	rbm4.3	96	64.088	Lepisosteus_oculatus
ENSDARG00000022129	rbm4.3	97	72.353	ENSMAMG00000004715	-	80	73.294	Mastacembelus_armatus
ENSDARG00000022129	rbm4.3	97	68.750	ENSMAMG00000004701	rbm4.3	94	69.697	Mastacembelus_armatus
ENSDARG00000022129	rbm4.3	97	70.833	ENSMZEG00005028540	rbm4.3	94	71.125	Maylandia_zebra
ENSDARG00000022129	rbm4.3	97	64.223	ENSMZEG00005007417	-	95	68.343	Maylandia_zebra
ENSDARG00000022129	rbm4.3	85	70.748	ENSMZEG00005007441	rbm4.3	79	70.447	Maylandia_zebra
ENSDARG00000022129	rbm4.3	84	65.986	ENSMZEG00005028537	-	83	69.595	Maylandia_zebra
ENSDARG00000022129	rbm4.3	97	66.667	ENSMMOG00000012191	rbm4.3	94	66.667	Mola_mola
ENSDARG00000022129	rbm4.3	92	65.723	ENSMALG00000003032	rbm4.3	95	65.495	Monopterus_albus
ENSDARG00000022129	rbm4.3	97	65.476	ENSMALG00000015014	-	93	66.462	Monopterus_albus
ENSDARG00000022129	rbm4.3	84	72.819	ENSMALG00000003001	rbm4.3	87	73.913	Monopterus_albus
ENSDARG00000022129	rbm4.3	97	70.238	ENSNBRG00000012372	rbm4.3	94	70.517	Neolamprologus_brichardi
ENSDARG00000022129	rbm4.3	97	67.742	ENSONIG00000018380	-	95	71.893	Oreochromis_niloticus
ENSDARG00000022129	rbm4.3	99	69.452	ENSONIG00000018378	rbm4.3	98	69.477	Oreochromis_niloticus
ENSDARG00000022129	rbm4.3	97	65.318	ENSORLG00000012473	rbm4.3	95	63.127	Oryzias_latipes
ENSDARG00000022129	rbm4.3	99	60.227	ENSORLG00000024749	rbm4.3	98	56.322	Oryzias_latipes
ENSDARG00000022129	rbm4.3	97	64.451	ENSORLG00000011589	rbm4.3	95	63.018	Oryzias_latipes
ENSDARG00000022129	rbm4.3	97	64.740	ENSORLG00020012474	rbm4.3	95	63.314	Oryzias_latipes_hni
ENSDARG00000022129	rbm4.3	99	61.143	ENSORLG00020012482	rbm4.3	95	57.784	Oryzias_latipes_hni
ENSDARG00000022129	rbm4.3	97	65.318	ENSORLG00020012464	rbm4.3	95	63.127	Oryzias_latipes_hni
ENSDARG00000022129	rbm4.3	97	65.318	ENSORLG00015013686	rbm4.3	95	62.832	Oryzias_latipes_hsok
ENSDARG00000022129	rbm4.3	97	63.295	ENSORLG00015013698	rbm4.3	95	63.018	Oryzias_latipes_hsok
ENSDARG00000022129	rbm4.3	99	61.429	ENSORLG00015013721	rbm4.3	95	58.383	Oryzias_latipes_hsok
ENSDARG00000022129	rbm4.3	99	64.986	ENSOMEG00000005918	rbm4.3	95	64.157	Oryzias_melastigma
ENSDARG00000022129	rbm4.3	97	64.162	ENSOMEG00000005929	rbm4.3	95	61.947	Oryzias_melastigma
ENSDARG00000022129	rbm4.3	96	63.095	ENSOMEG00000005950	rbm4.3	94	62.349	Oryzias_melastigma
ENSDARG00000022129	rbm4.3	94	71.772	ENSPKIG00000007001	rbm4.3	97	68.468	Paramormyrops_kingsleyae
ENSDARG00000022129	rbm4.3	50	76.023	ENSPLAG00000006107	rbm4.3	93	80.124	Poecilia_latipinna
ENSDARG00000022129	rbm4.3	99	66.477	ENSPLAG00000006131	rbm4.3	95	67.164	Poecilia_latipinna
ENSDARG00000022129	rbm4.3	99	61.281	ENSPLAG00000006077	rbm4.3	98	63.173	Poecilia_latipinna
ENSDARG00000022129	rbm4.3	99	66.477	ENSPMEG00000024271	rbm4.3	96	67.160	Poecilia_mexicana
ENSDARG00000022129	rbm4.3	97	65.789	ENSPMEG00000024263	rbm4.3	95	65.976	Poecilia_mexicana
ENSDARG00000022129	rbm4.3	99	61.281	ENSPMEG00000024260	rbm4.3	98	63.352	Poecilia_mexicana
ENSDARG00000022129	rbm4.3	99	64.368	ENSPREG00000002156	rbm4.3	95	63.772	Poecilia_reticulata
ENSDARG00000022129	rbm4.3	99	64.225	ENSPREG00000002093	-	95	63.343	Poecilia_reticulata
ENSDARG00000022129	rbm4.3	97	69.552	ENSPNYG00000018564	rbm4.3	94	70.517	Pundamilia_nyererei
ENSDARG00000022129	rbm4.3	97	67.742	ENSPNYG00000018541	rbm4.3	95	71.893	Pundamilia_nyererei
ENSDARG00000022129	rbm4.3	99	77.401	ENSPNAG00000013053	rbm4.3	95	77.876	Pygocentrus_nattereri
ENSDARG00000022129	rbm4.3	99	67.590	ENSSFOG00015015563	rbm4.3	96	65.318	Scleropages_formosus
ENSDARG00000022129	rbm4.3	97	70.882	ENSSMAG00000013644	rbm4.3	95	72.107	Scophthalmus_maximus
ENSDARG00000022129	rbm4.3	97	65.000	ENSSMAG00000013653	rbm4.3	94	62.985	Scophthalmus_maximus
ENSDARG00000022129	rbm4.3	99	68.571	ENSSDUG00000018422	rbm4.3	95	67.164	Seriola_dumerili
ENSDARG00000022129	rbm4.3	97	72.647	ENSSDUG00000018435	rbm4.3	95	73.591	Seriola_dumerili
ENSDARG00000022129	rbm4.3	97	72.647	ENSSLDG00000017204	rbm4.3	95	73.591	Seriola_lalandi_dorsalis
ENSDARG00000022129	rbm4.3	99	68.768	ENSSLDG00000017182	rbm4.3	95	67.665	Seriola_lalandi_dorsalis
ENSDARG00000022129	rbm4.3	99	71.143	ENSSPAG00000008062	rbm4.3	95	72.404	Stegastes_partitus
ENSDARG00000022129	rbm4.3	96	70.623	ENSSPAG00000008041	rbm4.3	80	71.471	Stegastes_partitus
ENSDARG00000022129	rbm4.3	97	62.832	ENSTRUG00000023874	rbm4.3	94	66.071	Takifugu_rubripes
ENSDARG00000022129	rbm4.3	99	68.946	ENSTRUG00000020901	rbm4.3	95	69.822	Takifugu_rubripes
ENSDARG00000022129	rbm4.3	99	67.908	ENSTNIG00000005668	rbm4.3	95	67.560	Tetraodon_nigroviridis
ENSDARG00000022129	rbm4.3	97	65.205	ENSXCOG00000006001	rbm4.3	95	65.396	Xiphophorus_couchianus
ENSDARG00000022129	rbm4.3	97	62.353	ENSXCOG00000005996	rbm4.3	95	65.569	Xiphophorus_couchianus
ENSDARG00000022129	rbm4.3	97	65.205	ENSXMAG00000021997	rbm4.3	95	67.059	Xiphophorus_maculatus
ENSDARG00000022129	rbm4.3	99	67.045	ENSXMAG00000011698	rbm4.3	96	67.751	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process