EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000023852 (Gene tree)
Gene ID: 393669
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8599 bases
Position: chr11:6859876-6868474
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000037344	LSM	PF01423.22	1.6e-16	1	1
ENSDARP00000135315	LSM	PF01423.22	1.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000168372	-	733	-	ENSDARP00000135315	129 (aa)	-	A0A0R4IJC4
ENSDART00000037824	-	832	-	ENSDARP00000037344	143 (aa)	-	Q6P6E4

Gene Model

Click here to download ENSDARG00000023852's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000023852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000023852	lsm4	73	31.818	ENSDARG00000042452	p2rx4b	86	31.818
ENSDARG00000023852	lsm4	54	35.000	ENSDARG00000070867	smx5	82	35.000
ENSDARG00000023852	lsm4	73	31.818	ENSDARG00000013800	snrpd3	86	31.818
ENSDARG00000023852	lsm4	54	35.000	ENSDARG00000103066	si:ch73-14h10.2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000023852	lsm4	62	98.864	ENSG00000130520	LSM4	97	78.723	Homo_sapiens
ENSDARG00000023852	lsm4	98	82.517	ENSAPOG00000005643	lsm4	95	82.000	Acanthochromis_polyacanthus
ENSDARG00000023852	lsm4	61	98.851	ENSAMEG00000011162	LSM4	92	78.571	Ailuropoda_melanoleuca
ENSDARG00000023852	lsm4	98	83.571	ENSAOCG00000006414	lsm4	95	83.673	Amphiprion_ocellaris
ENSDARG00000023852	lsm4	98	83.688	ENSAPEG00000006238	lsm4	95	83.108	Amphiprion_percula
ENSDARG00000023852	lsm4	99	80.137	ENSATEG00000016559	lsm4	89	83.803	Anabas_testudineus
ENSDARG00000023852	lsm4	62	98.864	ENSANAG00000034659	LSM4	97	78.723	Aotus_nancymaae
ENSDARG00000023852	lsm4	99	85.135	ENSACLG00000022738	lsm4	96	82.432	Astatotilapia_calliptera
ENSDARG00000023852	lsm4	99	90.141	ENSAMXG00000016932	lsm4	96	90.845	Astyanax_mexicanus
ENSDARG00000023852	lsm4	62	98.864	ENSBTAG00000008578	LSM4	97	78.723	Bos_taurus
ENSDARG00000023852	lsm4	58	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSDARG00000023852	lsm4	62	98.864	ENSCJAG00000014171	LSM4	97	78.723	Callithrix_jacchus
ENSDARG00000023852	lsm4	62	98.864	ENSCAFG00000014900	LSM4	88	78.723	Canis_familiaris
ENSDARG00000023852	lsm4	62	98.864	ENSCAFG00020012137	LSM4	97	78.723	Canis_lupus_dingo
ENSDARG00000023852	lsm4	61	98.851	ENSCHIG00000010928	LSM4	89	78.571	Capra_hircus
ENSDARG00000023852	lsm4	62	97.727	ENSTSYG00000030906	LSM4	97	78.014	Carlito_syrichta
ENSDARG00000023852	lsm4	62	97.727	ENSCAPG00000014140	LSM4	99	77.622	Cavia_aperea
ENSDARG00000023852	lsm4	62	97.727	ENSCPOG00000024117	LSM4	99	77.622	Cavia_porcellus
ENSDARG00000023852	lsm4	62	98.864	ENSCCAG00000036308	LSM4	97	78.723	Cebus_capucinus
ENSDARG00000023852	lsm4	62	98.864	ENSCATG00000029311	LSM4	97	78.723	Cercocebus_atys
ENSDARG00000023852	lsm4	62	98.864	ENSCLAG00000010828	LSM4	97	78.723	Chinchilla_lanigera
ENSDARG00000023852	lsm4	62	98.864	ENSCSAG00000005370	LSM4	97	78.723	Chlorocebus_sabaeus
ENSDARG00000023852	lsm4	99	85.816	ENSCPBG00000012925	LSM4	99	86.014	Chrysemys_picta_bellii
ENSDARG00000023852	lsm4	83	74.790	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSDARG00000023852	lsm4	60	93.023	ENSCSAVG00000008596	-	76	89.474	Ciona_savignyi
ENSDARG00000023852	lsm4	62	98.864	ENSCANG00000043686	LSM4	97	78.723	Colobus_angolensis_palliatus
ENSDARG00000023852	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	97	76.596	Cricetulus_griseus_chok1gshd
ENSDARG00000023852	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	97	76.429	Cricetulus_griseus_crigri
ENSDARG00000023852	lsm4	68	97.938	ENSCSEG00000016127	lsm4	96	86.713	Cynoglossus_semilaevis
ENSDARG00000023852	lsm4	98	79.528	ENSCVAG00000021828	lsm4	93	85.271	Cyprinodon_variegatus
ENSDARG00000023852	lsm4	99	81.690	ENSCVAG00000010601	lsm4	96	86.806	Cyprinodon_variegatus
ENSDARG00000023852	lsm4	62	97.727	ENSDORG00000024225	Lsm4	97	77.305	Dipodomys_ordii
ENSDARG00000023852	lsm4	68	82.474	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSDARG00000023852	lsm4	57	97.260	ENSETEG00000007762	-	97	76.190	Echinops_telfairi
ENSDARG00000023852	lsm4	75	73.832	ENSEBUG00000003639	-	90	66.429	Eptatretus_burgeri
ENSDARG00000023852	lsm4	62	98.864	ENSECAG00000010141	LSM4	55	78.723	Equus_caballus
ENSDARG00000023852	lsm4	97	85.507	ENSELUG00000012821	lsm4	100	85.612	Esox_lucius
ENSDARG00000023852	lsm4	62	98.864	ENSFCAG00000040580	LSM4	97	78.723	Felis_catus
ENSDARG00000023852	lsm4	98	85.000	ENSFALG00000009478	LSM4	98	85.211	Ficedula_albicollis
ENSDARG00000023852	lsm4	61	98.851	ENSFDAG00000010124	LSM4	97	78.571	Fukomys_damarensis
ENSDARG00000023852	lsm4	67	100.000	ENSGMOG00000007729	lsm4	99	79.310	Gadus_morhua
ENSDARG00000023852	lsm4	99	85.106	ENSGALG00000003385	LSM4	99	85.315	Gallus_gallus
ENSDARG00000023852	lsm4	99	86.806	ENSGAFG00000004903	lsm4	92	81.395	Gambusia_affinis
ENSDARG00000023852	lsm4	67	98.958	ENSGACG00000008140	lsm4	66	97.980	Gasterosteus_aculeatus
ENSDARG00000023852	lsm4	99	85.816	ENSGAGG00000017812	LSM4	99	86.014	Gopherus_agassizii
ENSDARG00000023852	lsm4	62	98.864	ENSGGOG00000012914	-	97	78.723	Gorilla_gorilla
ENSDARG00000023852	lsm4	99	85.714	ENSHBUG00000008858	lsm4	77	82.993	Haplochromis_burtoni
ENSDARG00000023852	lsm4	99	76.596	ENSHGLG00000006568	LSM4	97	77.305	Heterocephalus_glaber_female
ENSDARG00000023852	lsm4	65	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSDARG00000023852	lsm4	99	81.690	ENSHCOG00000008819	lsm4	96	86.014	Hippocampus_comes
ENSDARG00000023852	lsm4	99	90.845	ENSIPUG00000005368	Lsm4	96	91.549	Ictalurus_punctatus
ENSDARG00000023852	lsm4	62	98.864	ENSSTOG00000016494	LSM4	97	78.723	Ictidomys_tridecemlineatus
ENSDARG00000023852	lsm4	62	96.591	ENSJJAG00000017420	Lsm4	97	77.305	Jaculus_jaculus
ENSDARG00000023852	lsm4	60	98.837	ENSKMAG00000005073	lsm4	96	85.517	Kryptolebias_marmoratus
ENSDARG00000023852	lsm4	99	82.517	ENSLBEG00000027930	lsm4	96	82.000	Labrus_bergylta
ENSDARG00000023852	lsm4	99	87.234	ENSLACG00000015861	LSM4	96	86.525	Latimeria_chalumnae
ENSDARG00000023852	lsm4	71	97.030	ENSLOCG00000002025	lsm4	94	88.571	Lepisosteus_oculatus
ENSDARG00000023852	lsm4	61	97.701	ENSLAFG00000017459	LSM4	96	78.571	Loxodonta_africana
ENSDARG00000023852	lsm4	62	98.864	ENSMFAG00000031194	LSM4	97	78.723	Macaca_fascicularis
ENSDARG00000023852	lsm4	62	98.864	ENSMMUG00000004405	LSM4	97	78.723	Macaca_mulatta
ENSDARG00000023852	lsm4	62	98.864	ENSMNEG00000042899	LSM4	97	78.723	Macaca_nemestrina
ENSDARG00000023852	lsm4	62	98.864	ENSMLEG00000027948	LSM4	97	78.723	Mandrillus_leucophaeus
ENSDARG00000023852	lsm4	99	88.112	ENSMAMG00000006190	lsm4	96	85.315	Mastacembelus_armatus
ENSDARG00000023852	lsm4	99	85.714	ENSMZEG00005016420	lsm4	96	82.993	Maylandia_zebra
ENSDARG00000023852	lsm4	99	83.803	ENSMGAG00000004976	LSM4	98	84.507	Meleagris_gallopavo
ENSDARG00000023852	lsm4	69	94.949	ENSMICG00000000222	LSM4	97	78.014	Microcebus_murinus
ENSDARG00000023852	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	97	76.596	Microtus_ochrogaster
ENSDARG00000023852	lsm4	57	100.000	ENSMODG00000015044	-	97	78.571	Monodelphis_domestica
ENSDARG00000023852	lsm4	99	82.394	ENSMALG00000018159	lsm4	96	84.722	Monopterus_albus
ENSDARG00000023852	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	97	76.596	Mus_caroli
ENSDARG00000023852	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	96	86.869	Mus_musculus
ENSDARG00000023852	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	97	76.596	Mus_pahari
ENSDARG00000023852	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	97	76.596	Mus_spretus
ENSDARG00000023852	lsm4	62	98.864	ENSMPUG00000015589	LSM4	97	78.723	Mustela_putorius_furo
ENSDARG00000023852	lsm4	61	98.851	ENSMLUG00000004010	LSM4	96	78.571	Myotis_lucifugus
ENSDARG00000023852	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	97	76.596	Nannospalax_galili
ENSDARG00000023852	lsm4	69	97.959	ENSNBRG00000022150	lsm4	60	97.959	Neolamprologus_brichardi
ENSDARG00000023852	lsm4	57	95.890	ENSMEUG00000013229	LSM4	97	74.603	Notamacropus_eugenii
ENSDARG00000023852	lsm4	98	74.603	ENSOPRG00000005575	LSM4	97	72.222	Ochotona_princeps
ENSDARG00000023852	lsm4	99	61.268	ENSODEG00000011712	-	96	61.268	Octodon_degus
ENSDARG00000023852	lsm4	62	98.864	ENSODEG00000020549	-	97	78.014	Octodon_degus
ENSDARG00000023852	lsm4	62	88.636	ENSODEG00000004519	-	72	85.859	Octodon_degus
ENSDARG00000023852	lsm4	99	85.135	ENSONIG00000012724	lsm4	96	82.432	Oreochromis_niloticus
ENSDARG00000023852	lsm4	57	100.000	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSDARG00000023852	lsm4	99	86.897	ENSORLG00000008391	lsm4	96	84.138	Oryzias_latipes
ENSDARG00000023852	lsm4	99	87.586	ENSORLG00020014829	lsm4	96	84.828	Oryzias_latipes_hni
ENSDARG00000023852	lsm4	99	86.897	ENSORLG00015010205	lsm4	96	84.138	Oryzias_latipes_hsok
ENSDARG00000023852	lsm4	99	86.897	ENSOMEG00000003606	lsm4	96	84.828	Oryzias_melastigma
ENSDARG00000023852	lsm4	69	94.898	ENSOGAG00000027992	LSM4	67	94.898	Otolemur_garnettii
ENSDARG00000023852	lsm4	61	98.851	ENSOARG00000012553	LSM4	92	78.261	Ovis_aries
ENSDARG00000023852	lsm4	62	98.864	ENSPPAG00000044045	-	97	78.723	Pan_paniscus
ENSDARG00000023852	lsm4	62	98.864	ENSPPRG00000018264	LSM4	97	78.723	Panthera_pardus
ENSDARG00000023852	lsm4	61	98.851	ENSPTIG00000006306	LSM4	97	78.571	Panthera_tigris_altaica
ENSDARG00000023852	lsm4	62	98.864	ENSPTRG00000031470	LSM4	97	78.723	Pan_troglodytes
ENSDARG00000023852	lsm4	62	98.864	ENSPANG00000014399	LSM4	97	78.723	Papio_anubis
ENSDARG00000023852	lsm4	99	88.732	ENSPKIG00000006154	lsm4	96	89.437	Paramormyrops_kingsleyae
ENSDARG00000023852	lsm4	98	85.000	ENSPSIG00000012358	LSM4	99	85.211	Pelodiscus_sinensis
ENSDARG00000023852	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	97	76.596	Peromyscus_maniculatus_bairdii
ENSDARG00000023852	lsm4	99	87.500	ENSPFOG00000000570	lsm4	73	85.417	Poecilia_formosa
ENSDARG00000023852	lsm4	99	88.194	ENSPLAG00000016267	lsm4	96	85.417	Poecilia_latipinna
ENSDARG00000023852	lsm4	99	87.500	ENSPMEG00000016378	lsm4	96	85.417	Poecilia_mexicana
ENSDARG00000023852	lsm4	99	84.722	ENSPREG00000011290	lsm4	73	86.111	Poecilia_reticulata
ENSDARG00000023852	lsm4	62	98.864	ENSPPYG00000009736	LSM4	97	78.723	Pongo_abelii
ENSDARG00000023852	lsm4	57	97.260	ENSPCAG00000008513	LSM4	97	76.190	Procavia_capensis
ENSDARG00000023852	lsm4	69	94.949	ENSPCOG00000019837	LSM4	97	78.014	Propithecus_coquereli
ENSDARG00000023852	lsm4	62	98.864	ENSPVAG00000015383	LSM4	97	78.723	Pteropus_vampyrus
ENSDARG00000023852	lsm4	99	85.714	ENSPNYG00000016794	lsm4	96	82.993	Pundamilia_nyererei
ENSDARG00000023852	lsm4	99	90.071	ENSPNAG00000016598	lsm4	100	86.525	Pygocentrus_nattereri
ENSDARG00000023852	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	97	76.596	Rattus_norvegicus
ENSDARG00000023852	lsm4	62	98.864	ENSRBIG00000024717	LSM4	97	78.723	Rhinopithecus_bieti
ENSDARG00000023852	lsm4	62	98.864	ENSRROG00000045706	LSM4	97	78.723	Rhinopithecus_roxellana
ENSDARG00000023852	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSDARG00000023852	lsm4	57	98.649	ENSSBOG00000022455	LSM4	97	76.378	Saimiri_boliviensis_boliviensis
ENSDARG00000023852	lsm4	62	100.000	ENSSHAG00000011559	LSM4	97	80.851	Sarcophilus_harrisii
ENSDARG00000023852	lsm4	99	89.437	ENSSFOG00015021067	lsm4	96	90.141	Scleropages_formosus
ENSDARG00000023852	lsm4	69	96.970	ENSSMAG00000021020	lsm4	91	79.577	Scophthalmus_maximus
ENSDARG00000023852	lsm4	69	97.980	ENSSDUG00000009588	lsm4	59	97.980	Seriola_dumerili
ENSDARG00000023852	lsm4	69	97.980	ENSSLDG00000006827	lsm4	59	97.980	Seriola_lalandi_dorsalis
ENSDARG00000023852	lsm4	61	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSDARG00000023852	lsm4	98	81.818	ENSSPAG00000011615	lsm4	95	82.000	Stegastes_partitus
ENSDARG00000023852	lsm4	62	98.864	ENSSSCG00000034314	LSM4	97	78.723	Sus_scrofa
ENSDARG00000023852	lsm4	99	86.111	ENSTRUG00000021737	lsm4	96	83.333	Takifugu_rubripes
ENSDARG00000023852	lsm4	99	86.111	ENSTNIG00000010191	lsm4	96	85.417	Tetraodon_nigroviridis
ENSDARG00000023852	lsm4	62	98.864	ENSUAMG00000000665	LSM4	82	95.960	Ursus_americanus
ENSDARG00000023852	lsm4	62	98.864	ENSUMAG00000009013	LSM4	97	78.723	Ursus_maritimus
ENSDARG00000023852	lsm4	61	98.851	ENSVVUG00000008136	LSM4	69	78.571	Vulpes_vulpes
ENSDARG00000023852	lsm4	68	97.938	ENSXETG00000024933	lsm4	97	85.106	Xenopus_tropicalis
ENSDARG00000023852	lsm4	99	86.806	ENSXMAG00000026672	lsm4	73	84.722	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process