EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000024416 (Gene tree)
Gene ID: 402856
Gene Symbol: twistnb
Alias: -
Full Name: TWIST neighbor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 9486 bases
Position: chr19:2395114-2404599
Accession: ZDB-GENE-041007-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000104602	SHS2_Rpb7-N	PF03876.17	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000127578	-	3924	XM_017352209	ENSDARP00000104602	390 (aa)	XP_017207698	F1R1A1

Gene Model

Click here to download ENSDARG00000024416's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000024416's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000024416	twistnb	55	54.630	ENSG00000105849	TWISTNB	64	52.609	Homo_sapiens
ENSDARG00000024416	twistnb	54	60.094	ENSAPOG00000011796	twistnb	83	46.857	Acanthochromis_polyacanthus
ENSDARG00000024416	twistnb	60	51.282	ENSAMEG00000008558	TWISTNB	50	57.653	Ailuropoda_melanoleuca
ENSDARG00000024416	twistnb	97	41.013	ENSACIG00000020400	twistnb	94	41.117	Amphilophus_citrinellus
ENSDARG00000024416	twistnb	55	59.813	ENSAOCG00000024200	twistnb	86	47.368	Amphiprion_ocellaris
ENSDARG00000024416	twistnb	55	59.813	ENSAPEG00000016750	twistnb	86	44.818	Amphiprion_percula
ENSDARG00000024416	twistnb	65	55.556	ENSATEG00000017956	twistnb	83	49.153	Anabas_testudineus
ENSDARG00000024416	twistnb	58	55.022	ENSACLG00000022280	twistnb	57	55.022	Astatotilapia_calliptera
ENSDARG00000024416	twistnb	62	58.871	ENSAMXG00000035868	twistnb	82	58.088	Astyanax_mexicanus
ENSDARG00000024416	twistnb	56	54.338	ENSCJAG00000001148	TWISTNB	62	54.630	Callithrix_jacchus
ENSDARG00000024416	twistnb	53	55.825	ENSTSYG00000001471	TWISTNB	59	55.825	Carlito_syrichta
ENSDARG00000024416	twistnb	52	56.373	ENSCCAG00000026416	TWISTNB	61	54.630	Cebus_capucinus
ENSDARG00000024416	twistnb	55	54.630	ENSCATG00000035621	TWISTNB	62	54.630	Cercocebus_atys
ENSDARG00000024416	twistnb	55	54.630	ENSCSAG00000013544	TWISTNB	62	54.630	Chlorocebus_sabaeus
ENSDARG00000024416	twistnb	55	54.630	ENSCANG00000038759	TWISTNB	64	52.609	Colobus_angolensis_palliatus
ENSDARG00000024416	twistnb	94	45.067	ENSCVAG00000014324	twistnb	62	55.794	Cyprinodon_variegatus
ENSDARG00000024416	twistnb	53	55.502	ENSDNOG00000006438	-	63	54.630	Dasypus_novemcinctus
ENSDARG00000024416	twistnb	99	42.222	ENSELUG00000000098	TWISTNB	98	41.191	Esox_lucius
ENSDARG00000024416	twistnb	85	41.399	ENSFALG00000009761	TWISTNB	93	41.049	Ficedula_albicollis
ENSDARG00000024416	twistnb	59	57.759	ENSFHEG00000013318	twistnb	59	59.821	Fundulus_heteroclitus
ENSDARG00000024416	twistnb	57	57.014	ENSGACG00000006425	twistnb	69	63.536	Gasterosteus_aculeatus
ENSDARG00000024416	twistnb	52	56.373	ENSGGOG00000026888	TWISTNB	61	54.128	Gorilla_gorilla
ENSDARG00000024416	twistnb	56	56.364	ENSHBUG00000020155	twistnb	51	58.738	Haplochromis_burtoni
ENSDARG00000024416	twistnb	53	56.522	ENSHGLG00000010976	TWISTNB	61	56.250	Heterocephalus_glaber_female
ENSDARG00000024416	twistnb	53	56.522	ENSHGLG00100005410	TWISTNB	61	56.250	Heterocephalus_glaber_male
ENSDARG00000024416	twistnb	56	56.277	ENSHCOG00000010590	twistnb	54	56.579	Hippocampus_comes
ENSDARG00000024416	twistnb	100	46.329	ENSIPUG00000004117	twistnb	97	45.220	Ictalurus_punctatus
ENSDARG00000024416	twistnb	52	56.863	ENSJJAG00000015887	Twistnb	75	50.813	Jaculus_jaculus
ENSDARG00000024416	twistnb	95	45.383	ENSLBEG00000024225	twistnb	88	45.767	Labrus_bergylta
ENSDARG00000024416	twistnb	53	58.173	ENSLACG00000010508	TWISTNB	58	58.738	Latimeria_chalumnae
ENSDARG00000024416	twistnb	52	64.878	ENSLOCG00000011399	twistnb	73	58.848	Lepisosteus_oculatus
ENSDARG00000024416	twistnb	55	54.167	ENSMFAG00000045328	TWISTNB	62	54.167	Macaca_fascicularis
ENSDARG00000024416	twistnb	55	54.167	ENSMMUG00000009609	TWISTNB	61	54.167	Macaca_mulatta
ENSDARG00000024416	twistnb	55	54.167	ENSMNEG00000041159	TWISTNB	62	54.167	Macaca_nemestrina
ENSDARG00000024416	twistnb	55	54.630	ENSMLEG00000042783	TWISTNB	62	54.630	Mandrillus_leucophaeus
ENSDARG00000024416	twistnb	58	55.022	ENSMZEG00005007561	twistnb	57	55.022	Maylandia_zebra
ENSDARG00000024416	twistnb	53	56.398	ENSMICG00000036489	TWISTNB	62	56.398	Microcebus_murinus
ENSDARG00000024416	twistnb	51	59.701	ENSNBRG00000008652	twistnb	54	59.701	Neolamprologus_brichardi
ENSDARG00000024416	twistnb	51	57.071	ENSOPRG00000016109	TWISTNB	63	54.673	Ochotona_princeps
ENSDARG00000024416	twistnb	87	44.868	ENSORLG00000004005	twistnb	73	44.058	Oryzias_latipes
ENSDARG00000024416	twistnb	87	45.748	ENSORLG00020002579	twistnb	87	44.920	Oryzias_latipes_hni
ENSDARG00000024416	twistnb	88	46.199	ENSORLG00015013403	twistnb	77	44.199	Oryzias_latipes_hsok
ENSDARG00000024416	twistnb	52	56.373	ENSOGAG00000009189	TWISTNB	60	54.128	Otolemur_garnettii
ENSDARG00000024416	twistnb	55	54.630	ENSPPAG00000034623	TWISTNB	64	52.609	Pan_paniscus
ENSDARG00000024416	twistnb	55	54.630	ENSPTRG00000018962	TWISTNB	64	52.609	Pan_troglodytes
ENSDARG00000024416	twistnb	54	55.607	ENSPANG00000015736	TWISTNB	59	56.373	Papio_anubis
ENSDARG00000024416	twistnb	51	67.662	ENSPKIG00000025635	twistnb	53	69.634	Paramormyrops_kingsleyae
ENSDARG00000024416	twistnb	92	43.478	ENSPMGG00000019023	twistnb	89	45.736	Periophthalmus_magnuspinnatus
ENSDARG00000024416	twistnb	71	42.960	ENSPCIG00000017456	TWISTNB	54	54.144	Phascolarctos_cinereus
ENSDARG00000024416	twistnb	55	54.167	ENSPPYG00000017752	TWISTNB	62	54.167	Pongo_abelii
ENSDARG00000024416	twistnb	52	56.436	ENSPVAG00000015574	TWISTNB	56	57.000	Pteropus_vampyrus
ENSDARG00000024416	twistnb	56	56.364	ENSPNYG00000002674	twistnb	61	55.172	Pundamilia_nyererei
ENSDARG00000024416	twistnb	95	44.032	ENSPNAG00000011956	twistnb	95	44.010	Pygocentrus_nattereri
ENSDARG00000024416	twistnb	55	54.630	ENSRBIG00000043007	TWISTNB	61	54.630	Rhinopithecus_bieti
ENSDARG00000024416	twistnb	55	54.630	ENSRROG00000040155	TWISTNB	62	54.630	Rhinopithecus_roxellana
ENSDARG00000024416	twistnb	56	54.338	ENSSBOG00000023188	TWISTNB	62	54.630	Saimiri_boliviensis_boliviensis
ENSDARG00000024416	twistnb	55	58.411	ENSSMAG00000012792	twistnb	84	43.750	Scophthalmus_maximus
ENSDARG00000024416	twistnb	94	46.561	ENSSDUG00000007038	twistnb	88	45.652	Seriola_dumerili
ENSDARG00000024416	twistnb	63	44.672	ENSSPUG00000007595	TWISTNB	55	55.357	Sphenodon_punctatus
ENSDARG00000024416	twistnb	57	58.850	ENSSPAG00000005871	twistnb	57	60.280	Stegastes_partitus
ENSDARG00000024416	twistnb	53	55.769	ENSTNIG00000017778	twistnb	60	55.769	Tetraodon_nigroviridis
ENSDARG00000024416	twistnb	52	57.353	ENSUAMG00000017593	TWISTNB	59	57.353	Ursus_americanus
ENSDARG00000024416	twistnb	52	57.353	ENSUMAG00000022203	TWISTNB	59	57.353	Ursus_maritimus
ENSDARG00000024416	twistnb	60	58.723	ENSXCOG00000020199	twistnb	56	62.857	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process