EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000025332 (Gene tree)
Gene ID: 393291
Gene Symbol: rbm28
Alias: zgc:56258
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 20470 bases
Position: chr18:10692945-10713414
Accession: ZDB-GENE-040426-960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000157607	RRM_1	PF00076.22	8.9e-80	1	5
ENSDARP00000157607	RRM_1	PF00076.22	8.9e-80	2	5
ENSDARP00000157607	RRM_1	PF00076.22	8.9e-80	3	5
ENSDARP00000157607	RRM_1	PF00076.22	8.9e-80	4	5
ENSDARP00000157607	RRM_1	PF00076.22	8.9e-80	5	5
ENSDARP00000034794	RRM_1	PF00076.22	9.4e-80	1	5
ENSDARP00000034794	RRM_1	PF00076.22	9.4e-80	2	5
ENSDARP00000034794	RRM_1	PF00076.22	9.4e-80	3	5
ENSDARP00000034794	RRM_1	PF00076.22	9.4e-80	4	5
ENSDARP00000034794	RRM_1	PF00076.22	9.4e-80	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000034817	-	3150	-	ENSDARP00000034794	856 (aa)	-	Q1LUW0
ENSDART00000183646	-	2553	-	ENSDARP00000157607	850 (aa)	-	A0A2R8S0J9

Gene Model

Click here to download ENSDARG00000025332's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000025332's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000025332	rbm28	100	46.753	ENSG00000106344	RBM28	100	72.414	Homo_sapiens
ENSDARG00000025332	rbm28	74	59.685	ENSAPOG00000015512	rbm28	85	59.692	Acanthochromis_polyacanthus
ENSDARG00000025332	rbm28	50	59.674	ENSACIG00000023153	rbm28	91	59.529	Amphilophus_citrinellus
ENSDARG00000025332	rbm28	74	60.271	ENSAOCG00000000462	rbm28	100	56.219	Amphiprion_ocellaris
ENSDARG00000025332	rbm28	74	60.045	ENSAPEG00000012996	rbm28	100	56.716	Amphiprion_percula
ENSDARG00000025332	rbm28	100	55.224	ENSATEG00000001672	rbm28	100	55.721	Anabas_testudineus
ENSDARG00000025332	rbm28	100	52.475	ENSANAG00000033922	RBM28	83	56.410	Aotus_nancymaae
ENSDARG00000025332	rbm28	100	54.505	ENSACLG00000025024	rbm28	89	60.225	Astatotilapia_calliptera
ENSDARG00000025332	rbm28	52	62.022	ENSAMXG00000000763	rbm28	100	62.980	Astyanax_mexicanus
ENSDARG00000025332	rbm28	75	56.720	ENSBTAG00000017001	RBM28	86	56.629	Bos_taurus
ENSDARG00000025332	rbm28	100	52.475	ENSCJAG00000017731	RBM28	100	56.071	Callithrix_jacchus
ENSDARG00000025332	rbm28	100	48.261	ENSCAFG00000001667	RBM28	100	48.729	Canis_familiaris
ENSDARG00000025332	rbm28	100	48.261	ENSCAFG00020021648	RBM28	100	48.729	Canis_lupus_dingo
ENSDARG00000025332	rbm28	100	51.163	ENSCHIG00000014146	RBM28	88	56.757	Capra_hircus
ENSDARG00000025332	rbm28	79	56.531	ENSTSYG00000002892	RBM28	100	57.778	Carlito_syrichta
ENSDARG00000025332	rbm28	73	61.842	ENSCAPG00000013218	RBM28	94	51.402	Cavia_aperea
ENSDARG00000025332	rbm28	79	53.846	ENSCPOG00000006253	RBM28	86	54.957	Cavia_porcellus
ENSDARG00000025332	rbm28	90	52.893	ENSCCAG00000035105	RBM28	88	56.410	Cebus_capucinus
ENSDARG00000025332	rbm28	99	46.855	ENSCATG00000040497	RBM28	99	56.410	Cercocebus_atys
ENSDARG00000025332	rbm28	99	47.186	ENSCSAG00000010161	RBM28	100	56.512	Chlorocebus_sabaeus
ENSDARG00000025332	rbm28	51	53.443	ENSCHOG00000001994	-	63	53.443	Choloepus_hoffmanni
ENSDARG00000025332	rbm28	99	46.753	ENSCANG00000038397	RBM28	99	48.052	Colobus_angolensis_palliatus
ENSDARG00000025332	rbm28	93	52.209	ENSCGRG00001021278	Rbm28	100	50.000	Cricetulus_griseus_chok1gshd
ENSDARG00000025332	rbm28	100	49.702	ENSCGRG00000005098	Rbm28	88	55.830	Cricetulus_griseus_crigri
ENSDARG00000025332	rbm28	100	52.074	ENSCSEG00000004212	rbm28	87	60.044	Cynoglossus_semilaevis
ENSDARG00000025332	rbm28	75	60.225	ENSCVAG00000010493	rbm28	82	60.225	Cyprinodon_variegatus
ENSDARG00000025332	rbm28	99	50.000	ENSDNOG00000001124	RBM28	84	55.973	Dasypus_novemcinctus
ENSDARG00000025332	rbm28	82	52.008	ENSDORG00000004184	Rbm28	97	54.810	Dipodomys_ordii
ENSDARG00000025332	rbm28	87	35.659	FBgn0260456	CG4806	98	35.659	Drosophila_melanogaster
ENSDARG00000025332	rbm28	99	38.239	ENSEBUG00000004419	rbm28	98	44.144	Eptatretus_burgeri
ENSDARG00000025332	rbm28	84	52.756	ENSECAG00000007745	RBM28	100	53.023	Equus_caballus
ENSDARG00000025332	rbm28	100	50.495	ENSEEUG00000002389	RBM28	100	50.242	Erinaceus_europaeus
ENSDARG00000025332	rbm28	100	52.863	ENSELUG00000020602	rbm28	87	58.009	Esox_lucius
ENSDARG00000025332	rbm28	100	50.472	ENSFCAG00000000946	RBM28	88	55.556	Felis_catus
ENSDARG00000025332	rbm28	100	46.977	ENSFDAG00000010169	RBM28	100	47.442	Fukomys_damarensis
ENSDARG00000025332	rbm28	99	52.308	ENSGMOG00000007091	rbm28	100	53.846	Gadus_morhua
ENSDARG00000025332	rbm28	51	58.636	ENSGAFG00000004802	rbm28	96	58.636	Gambusia_affinis
ENSDARG00000025332	rbm28	74	57.528	ENSGACG00000012612	rbm28	100	52.736	Gasterosteus_aculeatus
ENSDARG00000025332	rbm28	74	62.088	ENSGAGG00000008873	RBM28	91	59.474	Gopherus_agassizii
ENSDARG00000025332	rbm28	94	50.675	ENSGGOG00000004644	RBM28	55	70.968	Gorilla_gorilla
ENSDARG00000025332	rbm28	91	54.505	ENSHBUG00000009611	rbm28	84	63.636	Haplochromis_burtoni
ENSDARG00000025332	rbm28	100	48.387	ENSHGLG00000005409	RBM28	86	54.667	Heterocephalus_glaber_female
ENSDARG00000025332	rbm28	100	48.387	ENSHGLG00100016458	RBM28	86	54.667	Heterocephalus_glaber_male
ENSDARG00000025332	rbm28	99	48.438	ENSHCOG00000010597	rbm28	99	44.118	Hippocampus_comes
ENSDARG00000025332	rbm28	57	49.184	ENSIPUG00000007103	rbm28	81	53.756	Ictalurus_punctatus
ENSDARG00000025332	rbm28	99	50.445	ENSSTOG00000002169	RBM28	100	48.485	Ictidomys_tridecemlineatus
ENSDARG00000025332	rbm28	100	50.262	ENSJJAG00000022400	Rbm28	100	48.691	Jaculus_jaculus
ENSDARG00000025332	rbm28	99	53.125	ENSKMAG00000013348	rbm28	99	56.158	Kryptolebias_marmoratus
ENSDARG00000025332	rbm28	77	52.062	ENSLACG00000010485	-	82	55.212	Latimeria_chalumnae
ENSDARG00000025332	rbm28	100	49.595	ENSLOCG00000015541	rbm28	78	59.649	Lepisosteus_oculatus
ENSDARG00000025332	rbm28	100	50.495	ENSLAFG00000010717	RBM28	86	57.812	Loxodonta_africana
ENSDARG00000025332	rbm28	99	46.320	ENSMFAG00000031036	RBM28	99	47.619	Macaca_fascicularis
ENSDARG00000025332	rbm28	99	46.320	ENSMMUG00000007250	RBM28	99	47.619	Macaca_mulatta
ENSDARG00000025332	rbm28	99	46.632	ENSMNEG00000036970	RBM28	90	56.763	Macaca_nemestrina
ENSDARG00000025332	rbm28	80	46.320	ENSMLEG00000037717	RBM28	93	47.619	Mandrillus_leucophaeus
ENSDARG00000025332	rbm28	99	54.455	ENSMAMG00000008525	rbm28	86	59.424	Mastacembelus_armatus
ENSDARG00000025332	rbm28	92	53.523	ENSMZEG00005019625	rbm28	88	60.225	Maylandia_zebra
ENSDARG00000025332	rbm28	93	52.515	ENSMAUG00000002263	Rbm28	100	50.000	Mesocricetus_auratus
ENSDARG00000025332	rbm28	88	53.150	ENSMICG00000000107	RBM28	100	50.072	Microcebus_murinus
ENSDARG00000025332	rbm28	100	51.376	ENSMOCG00000014615	Rbm28	100	48.661	Microtus_ochrogaster
ENSDARG00000025332	rbm28	51	58.716	ENSMMOG00000008600	rbm28	94	58.259	Mola_mola
ENSDARG00000025332	rbm28	96	50.990	ENSMODG00000015151	RBM28	100	51.707	Monodelphis_domestica
ENSDARG00000025332	rbm28	77	58.874	ENSMALG00000006419	rbm28	85	59.524	Monopterus_albus
ENSDARG00000025332	rbm28	100	47.907	MGP_CAROLIEiJ_G0028162	Rbm28	88	56.858	Mus_caroli
ENSDARG00000025332	rbm28	100	47.403	ENSMUSG00000029701	Rbm28	88	56.889	Mus_musculus
ENSDARG00000025332	rbm28	100	48.372	MGP_PahariEiJ_G0021920	Rbm28	88	57.271	Mus_pahari
ENSDARG00000025332	rbm28	100	48.372	MGP_SPRETEiJ_G0029162	Rbm28	88	57.143	Mus_spretus
ENSDARG00000025332	rbm28	100	49.321	ENSMLUG00000002186	RBM28	91	56.502	Myotis_lucifugus
ENSDARG00000025332	rbm28	100	46.512	ENSNGAG00000017946	-	100	45.413	Nannospalax_galili
ENSDARG00000025332	rbm28	100	49.309	ENSNGAG00000006480	-	100	48.182	Nannospalax_galili
ENSDARG00000025332	rbm28	100	50.746	ENSNLEG00000012307	RBM28	100	50.000	Nomascus_leucogenys
ENSDARG00000025332	rbm28	82	71.111	ENSMEUG00000009611	RBM28	84	51.345	Notamacropus_eugenii
ENSDARG00000025332	rbm28	50	52.041	ENSOPRG00000015140	RBM28	54	50.510	Ochotona_princeps
ENSDARG00000025332	rbm28	72	65.517	ENSODEG00000013217	-	79	62.295	Octodon_degus
ENSDARG00000025332	rbm28	100	47.907	ENSODEG00000003213	-	87	53.273	Octodon_degus
ENSDARG00000025332	rbm28	76	60.771	ENSONIG00000014924	rbm28	100	51.739	Oreochromis_niloticus
ENSDARG00000025332	rbm28	100	50.495	ENSOANG00000000815	-	87	52.863	Ornithorhynchus_anatinus
ENSDARG00000025332	rbm28	100	49.541	ENSOCUG00000003009	RBM28	87	57.424	Oryctolagus_cuniculus
ENSDARG00000025332	rbm28	99	51.163	ENSORLG00000009636	rbm28	99	50.329	Oryzias_latipes
ENSDARG00000025332	rbm28	76	58.824	ENSORLG00020002123	rbm28	99	55.108	Oryzias_latipes_hni
ENSDARG00000025332	rbm28	90	58.072	ENSORLG00015015030	rbm28	99	58.072	Oryzias_latipes_hsok
ENSDARG00000025332	rbm28	75	59.780	ENSOMEG00000007801	rbm28	83	64.083	Oryzias_melastigma
ENSDARG00000025332	rbm28	64	52.569	ENSOGAG00000006011	RBM28	100	51.282	Otolemur_garnettii
ENSDARG00000025332	rbm28	100	46.753	ENSPPAG00000041730	RBM28	59	48.052	Pan_paniscus
ENSDARG00000025332	rbm28	100	50.472	ENSPPRG00000004420	RBM28	88	54.506	Panthera_pardus
ENSDARG00000025332	rbm28	100	50.472	ENSPTIG00000008550	RBM28	86	56.757	Panthera_tigris_altaica
ENSDARG00000025332	rbm28	100	46.753	ENSPTRG00000019659	RBM28	59	48.052	Pan_troglodytes
ENSDARG00000025332	rbm28	99	46.320	ENSPANG00000022295	RBM28	99	56.410	Papio_anubis
ENSDARG00000025332	rbm28	99	52.137	ENSPKIG00000023453	rbm28	99	52.137	Paramormyrops_kingsleyae
ENSDARG00000025332	rbm28	92	57.981	ENSPMGG00000012840	rbm28	100	57.981	Periophthalmus_magnuspinnatus
ENSDARG00000025332	rbm28	100	51.562	ENSPEMG00000020673	Rbm28	89	55.928	Peromyscus_maniculatus_bairdii
ENSDARG00000025332	rbm28	100	49.776	ENSPCIG00000012810	RBM28	100	51.707	Phascolarctos_cinereus
ENSDARG00000025332	rbm28	75	58.296	ENSPFOG00000018209	rbm28	85	58.407	Poecilia_formosa
ENSDARG00000025332	rbm28	76	60.739	ENSPLAG00000016078	rbm28	86	60.274	Poecilia_latipinna
ENSDARG00000025332	rbm28	75	59.911	ENSPMEG00000004292	rbm28	82	63.402	Poecilia_mexicana
ENSDARG00000025332	rbm28	99	50.628	ENSPREG00000014287	rbm28	99	49.372	Poecilia_reticulata
ENSDARG00000025332	rbm28	100	46.753	ENSPPYG00000017975	RBM28	59	48.052	Pongo_abelii
ENSDARG00000025332	rbm28	80	54.062	ENSPCAG00000008223	RBM28	84	53.533	Procavia_capensis
ENSDARG00000025332	rbm28	86	52.745	ENSPCOG00000016797	RBM28	86	56.600	Propithecus_coquereli
ENSDARG00000025332	rbm28	77	62.673	ENSPVAG00000005443	RBM28	68	65.842	Pteropus_vampyrus
ENSDARG00000025332	rbm28	100	54.054	ENSPNYG00000014003	rbm28	88	60.000	Pundamilia_nyererei
ENSDARG00000025332	rbm28	100	46.364	ENSRNOG00000005468	Rbm28	100	47.642	Rattus_norvegicus
ENSDARG00000025332	rbm28	99	47.186	ENSRBIG00000033990	RBM28	74	48.485	Rhinopithecus_bieti
ENSDARG00000025332	rbm28	99	47.186	ENSRROG00000040747	RBM28	90	56.291	Rhinopithecus_roxellana
ENSDARG00000025332	rbm28	92	51.485	ENSSBOG00000012308	RBM28	100	52.970	Saimiri_boliviensis_boliviensis
ENSDARG00000025332	rbm28	96	47.399	ENSSHAG00000017017	RBM28	97	55.530	Sarcophilus_harrisii
ENSDARG00000025332	rbm28	100	51.705	ENSSFOG00015001231	rbm28	100	51.978	Scleropages_formosus
ENSDARG00000025332	rbm28	53	55.459	ENSSMAG00000003885	rbm28	88	56.751	Scophthalmus_maximus
ENSDARG00000025332	rbm28	51	59.459	ENSSDUG00000014270	rbm28	91	59.459	Seriola_dumerili
ENSDARG00000025332	rbm28	78	60.626	ENSSLDG00000020099	rbm28	100	52.402	Seriola_lalandi_dorsalis
ENSDARG00000025332	rbm28	79	61.186	ENSSARG00000008303	RBM28	80	59.137	Sorex_araneus
ENSDARG00000025332	rbm28	68	58.824	ENSSPUG00000000838	RBM28	91	58.824	Sphenodon_punctatus
ENSDARG00000025332	rbm28	100	49.057	ENSSSCG00000031847	RBM28	86	57.883	Sus_scrofa
ENSDARG00000025332	rbm28	78	59.735	ENSTRUG00000013311	rbm28	86	59.735	Takifugu_rubripes
ENSDARG00000025332	rbm28	99	49.351	ENSTNIG00000017962	rbm28	87	59.773	Tetraodon_nigroviridis
ENSDARG00000025332	rbm28	73	58.786	ENSTBEG00000012749	RBM28	68	58.654	Tupaia_belangeri
ENSDARG00000025332	rbm28	99	57.403	ENSTTRG00000013647	RBM28	88	57.528	Tursiops_truncatus
ENSDARG00000025332	rbm28	100	50.000	ENSUAMG00000006949	RBM28	90	50.776	Ursus_americanus
ENSDARG00000025332	rbm28	82	59.302	ENSVPAG00000008304	RBM28	85	59.302	Vicugna_pacos
ENSDARG00000025332	rbm28	100	48.261	ENSVVUG00000007270	RBM28	100	48.729	Vulpes_vulpes
ENSDARG00000025332	rbm28	80	51.020	ENSXETG00000009271	rbm28	86	52.516	Xenopus_tropicalis
ENSDARG00000025332	rbm28	57	51.829	ENSXCOG00000020357	rbm28	92	55.357	Xiphophorus_couchianus
ENSDARG00000025332	rbm28	75	57.919	ENSXMAG00000004415	rbm28	84	57.919	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component