EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000025386 (Gene tree)
Gene ID: 393140
Gene Symbol: lsm14b
Alias: zRAP55|zgc:55673
Full Name: LSM family member 14B
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 13788 bases
Position: chr23:553396-567183
Accession: ZDB-GENE-040426-779
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000033806	FDF	PF09532.10	4.3e-17	1	1
ENSDARP00000033806	SM-ATX	PF14438.6	3.4e-08	1	1
ENSDARP00000033806	LSM14	PF12701.7	6.2e-32	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000034707	-	1702	-	ENSDARP00000033806	380 (aa)	-	F1Q898

Gene Model

Click here to download ENSDARG00000025386's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000025386's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000025386	lsm14b	91	45.288	ENSDARG00000100553	lsm14ab	84	45.407
ENSDARG00000025386	lsm14b	91	44.444	ENSDARG00000006600	lsm14aa	96	87.805

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000025386	lsm14b	99	54.937	ENSG00000149657	LSM14B	99	56.746	Homo_sapiens
ENSDARG00000025386	lsm14b	90	56.983	ENSAPOG00000001780	lsm14b	99	55.499	Acanthochromis_polyacanthus
ENSDARG00000025386	lsm14b	99	50.572	ENSAMEG00000013430	LSM14B	100	49.885	Ailuropoda_melanoleuca
ENSDARG00000025386	lsm14b	62	42.797	ENSACIG00000003147	LSM14B	88	41.702	Amphilophus_citrinellus
ENSDARG00000025386	lsm14b	91	55.367	ENSACIG00000012266	lsm14b	100	55.875	Amphilophus_citrinellus
ENSDARG00000025386	lsm14b	100	48.756	ENSAOCG00000006667	LSM14B	92	50.678	Amphiprion_ocellaris
ENSDARG00000025386	lsm14b	90	56.901	ENSAOCG00000012380	lsm14b	99	55.784	Amphiprion_ocellaris
ENSDARG00000025386	lsm14b	90	55.977	ENSAPEG00000023633	lsm14b	99	54.642	Amphiprion_percula
ENSDARG00000025386	lsm14b	90	58.333	ENSATEG00000016603	lsm14b	91	57.955	Anabas_testudineus
ENSDARG00000025386	lsm14b	68	45.151	ENSATEG00000015895	LSM14B	89	44.444	Anabas_testudineus
ENSDARG00000025386	lsm14b	92	45.750	ENSAPLG00000013203	LSM14B	100	45.792	Anas_platyrhynchos
ENSDARG00000025386	lsm14b	92	55.738	ENSACAG00000016195	LSM14B	91	56.906	Anolis_carolinensis
ENSDARG00000025386	lsm14b	99	54.408	ENSANAG00000037915	LSM14B	99	55.102	Aotus_nancymaae
ENSDARG00000025386	lsm14b	99	55.297	ENSACLG00000019663	lsm14b	99	54.987	Astatotilapia_calliptera
ENSDARG00000025386	lsm14b	91	66.389	ENSAMXG00000002865	lsm14b	92	64.674	Astyanax_mexicanus
ENSDARG00000025386	lsm14b	99	51.270	ENSBTAG00000021558	LSM14B	99	50.583	Bos_taurus
ENSDARG00000025386	lsm14b	99	54.408	ENSCJAG00000014434	LSM14B	99	55.102	Callithrix_jacchus
ENSDARG00000025386	lsm14b	90	46.701	ENSCAFG00000012518	LSM14B	98	45.939	Canis_familiaris
ENSDARG00000025386	lsm14b	99	55.867	ENSCAFG00020022150	LSM14B	99	55.612	Canis_lupus_dingo
ENSDARG00000025386	lsm14b	99	56.599	ENSCHIG00000010284	-	99	55.897	Capra_hircus
ENSDARG00000025386	lsm14b	99	46.997	ENSCHIG00000022681	-	91	46.724	Capra_hircus
ENSDARG00000025386	lsm14b	89	51.412	ENSTSYG00000031914	LSM14B	89	50.286	Carlito_syrichta
ENSDARG00000025386	lsm14b	89	52.394	ENSCAPG00000013059	LSM14B	100	52.394	Cavia_aperea
ENSDARG00000025386	lsm14b	89	52.542	ENSCPOG00000038080	LSM14B	100	52.542	Cavia_porcellus
ENSDARG00000025386	lsm14b	92	40.710	ENSCCAG00000024900	-	83	39.196	Cebus_capucinus
ENSDARG00000025386	lsm14b	99	53.944	ENSCCAG00000021267	LSM14B	99	55.102	Cebus_capucinus
ENSDARG00000025386	lsm14b	99	54.937	ENSCATG00000036006	LSM14B	99	55.128	Cercocebus_atys
ENSDARG00000025386	lsm14b	89	52.571	ENSCLAG00000003186	LSM14B	100	52.542	Chinchilla_lanigera
ENSDARG00000025386	lsm14b	99	50.000	ENSCSAG00000015729	LSM14B	99	50.117	Chlorocebus_sabaeus
ENSDARG00000025386	lsm14b	68	34.432	ENSCHOG00000006997	-	63	40.828	Choloepus_hoffmanni
ENSDARG00000025386	lsm14b	100	51.147	ENSCPBG00000027065	LSM14B	100	50.345	Chrysemys_picta_bellii
ENSDARG00000025386	lsm14b	89	50.847	ENSCANG00000036986	LSM14B	100	50.000	Colobus_angolensis_palliatus
ENSDARG00000025386	lsm14b	99	54.453	ENSCGRG00001018399	Lsm14b	99	55.357	Cricetulus_griseus_chok1gshd
ENSDARG00000025386	lsm14b	64	40.726	ENSCGRG00000002484	-	100	41.129	Cricetulus_griseus_crigri
ENSDARG00000025386	lsm14b	61	39.068	ENSCGRG00000006111	-	92	40.288	Cricetulus_griseus_crigri
ENSDARG00000025386	lsm14b	90	55.493	ENSCSEG00000004722	lsm14b	91	55.679	Cynoglossus_semilaevis
ENSDARG00000025386	lsm14b	99	49.000	ENSCSEG00000020669	LSM14B	92	47.989	Cynoglossus_semilaevis
ENSDARG00000025386	lsm14b	66	38.224	ENSCVAG00000012433	-	88	35.124	Cyprinodon_variegatus
ENSDARG00000025386	lsm14b	69	40.129	ENSDNOG00000025246	LSM14B	100	39.935	Dasypus_novemcinctus
ENSDARG00000025386	lsm14b	90	50.142	ENSDORG00000016683	Lsm14b	100	38.835	Dipodomys_ordii
ENSDARG00000025386	lsm14b	99	45.736	ENSETEG00000001869	-	91	47.191	Echinops_telfairi
ENSDARG00000025386	lsm14b	57	45.946	ENSETEG00000011188	-	100	42.017	Echinops_telfairi
ENSDARG00000025386	lsm14b	69	46.125	ENSEASG00005023218	LSM14B	100	44.364	Equus_asinus_asinus
ENSDARG00000025386	lsm14b	99	56.378	ENSECAG00000010659	LSM14B	99	55.867	Equus_caballus
ENSDARG00000025386	lsm14b	75	43.643	ENSEEUG00000007331	LSM14B	79	69.231	Erinaceus_europaeus
ENSDARG00000025386	lsm14b	98	61.640	ENSELUG00000005780	lsm14b	92	62.079	Esox_lucius
ENSDARG00000025386	lsm14b	91	57.627	ENSELUG00000016299	LSM14B	92	56.704	Esox_lucius
ENSDARG00000025386	lsm14b	99	55.471	ENSFCAG00000003248	LSM14B	99	55.612	Felis_catus
ENSDARG00000025386	lsm14b	90	46.582	ENSFALG00000010618	LSM14B	100	46.867	Ficedula_albicollis
ENSDARG00000025386	lsm14b	89	51.977	ENSFDAG00000002214	LSM14B	100	51.977	Fukomys_damarensis
ENSDARG00000025386	lsm14b	69	46.690	ENSFHEG00000003362	LSM14B	82	45.536	Fundulus_heteroclitus
ENSDARG00000025386	lsm14b	91	55.000	ENSFHEG00000006237	lsm14b	99	54.359	Fundulus_heteroclitus
ENSDARG00000025386	lsm14b	99	53.506	ENSGMOG00000017115	lsm14b	89	56.863	Gadus_morhua
ENSDARG00000025386	lsm14b	100	55.556	ENSGALG00000005125	LSM14B	100	56.250	Gallus_gallus
ENSDARG00000025386	lsm14b	66	44.094	ENSGAFG00000013723	LSM14B	87	41.026	Gambusia_affinis
ENSDARG00000025386	lsm14b	99	50.639	ENSGAFG00000020318	lsm14b	99	50.895	Gambusia_affinis
ENSDARG00000025386	lsm14b	92	56.780	ENSGACG00000009973	lsm14b	92	55.000	Gasterosteus_aculeatus
ENSDARG00000025386	lsm14b	61	43.802	ENSGAGG00000004106	LSM14B	90	42.324	Gopherus_agassizii
ENSDARG00000025386	lsm14b	91	50.833	ENSGGOG00000005630	LSM14B	95	49.719	Gorilla_gorilla
ENSDARG00000025386	lsm14b	99	55.190	ENSHGLG00000015055	LSM14B	99	55.385	Heterocephalus_glaber_female
ENSDARG00000025386	lsm14b	89	50.857	ENSHGLG00100015273	LSM14B	100	49.711	Heterocephalus_glaber_male
ENSDARG00000025386	lsm14b	96	49.741	ENSHCOG00000018747	LSM14B	92	50.000	Hippocampus_comes
ENSDARG00000025386	lsm14b	60	42.424	ENSHCOG00000004867	lsm14b	86	43.644	Hippocampus_comes
ENSDARG00000025386	lsm14b	91	66.949	ENSIPUG00000014946	lsm14b	87	66.389	Ictalurus_punctatus
ENSDARG00000025386	lsm14b	89	51.989	ENSSTOG00000020482	LSM14B	100	50.852	Ictidomys_tridecemlineatus
ENSDARG00000025386	lsm14b	99	54.615	ENSJJAG00000012728	Lsm14b	99	55.527	Jaculus_jaculus
ENSDARG00000025386	lsm14b	90	56.461	ENSKMAG00000017524	lsm14b	92	56.667	Kryptolebias_marmoratus
ENSDARG00000025386	lsm14b	59	41.322	ENSKMAG00000012834	-	58	50.704	Kryptolebias_marmoratus
ENSDARG00000025386	lsm14b	66	42.857	ENSLBEG00000007951	LSM14B	86	41.202	Labrus_bergylta
ENSDARG00000025386	lsm14b	91	80.000	ENSLACG00000003849	LSM14B	92	52.778	Latimeria_chalumnae
ENSDARG00000025386	lsm14b	91	61.496	ENSLOCG00000003746	lsm14b	92	60.165	Lepisosteus_oculatus
ENSDARG00000025386	lsm14b	90	51.404	ENSLAFG00000007492	LSM14B	100	50.843	Loxodonta_africana
ENSDARG00000025386	lsm14b	99	54.937	ENSMFAG00000041479	LSM14B	99	55.128	Macaca_fascicularis
ENSDARG00000025386	lsm14b	99	54.937	ENSMMUG00000014084	LSM14B	99	55.128	Macaca_mulatta
ENSDARG00000025386	lsm14b	99	54.937	ENSMNEG00000045573	LSM14B	99	55.128	Macaca_nemestrina
ENSDARG00000025386	lsm14b	89	51.412	ENSMLEG00000040895	LSM14B	100	50.286	Mandrillus_leucophaeus
ENSDARG00000025386	lsm14b	90	57.983	ENSMAMG00000020539	lsm14b	91	57.618	Mastacembelus_armatus
ENSDARG00000025386	lsm14b	98	52.865	ENSMAMG00000024124	LSM14B	92	52.089	Mastacembelus_armatus
ENSDARG00000025386	lsm14b	99	56.072	ENSMZEG00005000987	lsm14b	99	55.754	Maylandia_zebra
ENSDARG00000025386	lsm14b	91	48.087	ENSMZEG00005026001	LSM14B	94	48.493	Maylandia_zebra
ENSDARG00000025386	lsm14b	92	51.087	ENSMGAG00000005300	LSM14B	100	51.351	Meleagris_gallopavo
ENSDARG00000025386	lsm14b	99	54.453	ENSMAUG00000020700	Lsm14b	99	55.357	Mesocricetus_auratus
ENSDARG00000025386	lsm14b	99	55.416	ENSMICG00000014675	LSM14B	99	55.867	Microcebus_murinus
ENSDARG00000025386	lsm14b	99	53.964	ENSMOCG00000020600	Lsm14b	99	56.599	Microtus_ochrogaster
ENSDARG00000025386	lsm14b	62	36.232	ENSMOCG00000005119	-	93	38.235	Microtus_ochrogaster
ENSDARG00000025386	lsm14b	92	54.648	ENSMMOG00000017321	LSM14B	92	54.108	Mola_mola
ENSDARG00000025386	lsm14b	91	57.103	ENSMMOG00000020042	lsm14b	95	55.278	Mola_mola
ENSDARG00000025386	lsm14b	69	40.446	ENSMODG00000016690	LSM14B	100	41.853	Monodelphis_domestica
ENSDARG00000025386	lsm14b	99	54.026	ENSMALG00000004783	lsm14b	92	55.587	Monopterus_albus
ENSDARG00000025386	lsm14b	92	50.407	ENSMALG00000022251	LSM14B	92	48.493	Monopterus_albus
ENSDARG00000025386	lsm14b	92	57.064	MGP_CAROLIEiJ_G0024770	Lsm14b	91	58.056	Mus_caroli
ENSDARG00000025386	lsm14b	99	54.962	ENSMUSG00000039108	Lsm14b	99	55.867	Mus_musculus
ENSDARG00000025386	lsm14b	99	54.962	MGP_PahariEiJ_G0026214	Lsm14b	99	55.867	Mus_pahari
ENSDARG00000025386	lsm14b	99	54.962	MGP_SPRETEiJ_G0025693	Lsm14b	99	55.867	Mus_spretus
ENSDARG00000025386	lsm14b	95	47.573	ENSMPUG00000007584	LSM14B	100	46.078	Mustela_putorius_furo
ENSDARG00000025386	lsm14b	91	59.437	ENSMLUG00000000304	LSM14B	99	56.378	Myotis_lucifugus
ENSDARG00000025386	lsm14b	60	42.194	ENSNGAG00000016550	Lsm14b	77	49.451	Nannospalax_galili
ENSDARG00000025386	lsm14b	89	51.412	ENSNLEG00000015757	LSM14B	100	50.286	Nomascus_leucogenys
ENSDARG00000025386	lsm14b	76	79.167	ENSMEUG00000008267	-	79	79.167	Notamacropus_eugenii
ENSDARG00000025386	lsm14b	50	80.000	ENSOPRG00000000447	-	62	80.000	Ochotona_princeps
ENSDARG00000025386	lsm14b	99	54.937	ENSODEG00000004099	LSM14B	99	55.128	Octodon_degus
ENSDARG00000025386	lsm14b	99	55.330	ENSONIG00000020318	lsm14b	99	57.033	Oreochromis_niloticus
ENSDARG00000025386	lsm14b	71	56.679	ENSOANG00000003370	LSM14B	96	56.410	Ornithorhynchus_anatinus
ENSDARG00000025386	lsm14b	90	52.542	ENSOCUG00000006279	LSM14B	100	52.514	Oryctolagus_cuniculus
ENSDARG00000025386	lsm14b	93	46.649	ENSORLG00000028353	LSM14B	91	47.091	Oryzias_latipes
ENSDARG00000025386	lsm14b	91	52.732	ENSORLG00000013525	lsm14b	99	53.368	Oryzias_latipes
ENSDARG00000025386	lsm14b	91	52.732	ENSORLG00020020553	lsm14b	99	53.627	Oryzias_latipes_hni
ENSDARG00000025386	lsm14b	63	35.581	ENSORLG00020018191	-	85	33.977	Oryzias_latipes_hni
ENSDARG00000025386	lsm14b	91	52.732	ENSORLG00015016862	lsm14b	99	53.627	Oryzias_latipes_hsok
ENSDARG00000025386	lsm14b	93	46.917	ENSORLG00015013157	LSM14B	91	46.027	Oryzias_latipes_hsok
ENSDARG00000025386	lsm14b	91	51.913	ENSOMEG00000023917	lsm14b	99	53.109	Oryzias_melastigma
ENSDARG00000025386	lsm14b	64	39.837	ENSOMEG00000000171	-	85	37.768	Oryzias_melastigma
ENSDARG00000025386	lsm14b	99	50.688	ENSOGAG00000003915	LSM14B	99	50.812	Otolemur_garnettii
ENSDARG00000025386	lsm14b	91	46.384	ENSOARG00000014706	LSM14B	98	46.154	Ovis_aries
ENSDARG00000025386	lsm14b	91	50.833	ENSPPAG00000035799	LSM14B	95	49.719	Pan_paniscus
ENSDARG00000025386	lsm14b	99	55.471	ENSPPRG00000009197	LSM14B	99	55.612	Panthera_pardus
ENSDARG00000025386	lsm14b	61	46.444	ENSPTIG00000021518	LSM14B	90	44.033	Panthera_tigris_altaica
ENSDARG00000025386	lsm14b	99	54.937	ENSPTRG00000013696	LSM14B	99	55.128	Pan_troglodytes
ENSDARG00000025386	lsm14b	99	55.190	ENSPANG00000011747	LSM14B	99	55.385	Papio_anubis
ENSDARG00000025386	lsm14b	92	66.857	ENSPKIG00000003275	lsm14b	88	89.474	Paramormyrops_kingsleyae
ENSDARG00000025386	lsm14b	90	51.420	ENSPSIG00000014762	LSM14B	100	52.247	Pelodiscus_sinensis
ENSDARG00000025386	lsm14b	99	55.102	ENSPEMG00000017688	Lsm14b	100	56.010	Peromyscus_maniculatus_bairdii
ENSDARG00000025386	lsm14b	99	56.522	ENSPCIG00000013405	LSM14B	99	56.962	Phascolarctos_cinereus
ENSDARG00000025386	lsm14b	99	52.911	ENSPFOG00000005631	lsm14b	99	52.911	Poecilia_formosa
ENSDARG00000025386	lsm14b	99	53.351	ENSPLAG00000002449	lsm14b	99	53.351	Poecilia_latipinna
ENSDARG00000025386	lsm14b	91	48.169	ENSPLAG00000005793	LSM14B	92	47.191	Poecilia_latipinna
ENSDARG00000025386	lsm14b	99	52.320	ENSPMEG00000000745	lsm14b	99	53.093	Poecilia_mexicana
ENSDARG00000025386	lsm14b	90	49.858	ENSPMEG00000022953	LSM14B	92	48.324	Poecilia_mexicana
ENSDARG00000025386	lsm14b	62	38.976	ENSPREG00000007828	LSM14B	87	37.692	Poecilia_reticulata
ENSDARG00000025386	lsm14b	99	55.668	ENSPCOG00000013625	LSM14B	99	55.867	Propithecus_coquereli
ENSDARG00000025386	lsm14b	71	42.908	ENSPVAG00000017918	LSM14B	100	43.849	Pteropus_vampyrus
ENSDARG00000025386	lsm14b	91	67.680	ENSPNAG00000012777	lsm14b	92	67.308	Pygocentrus_nattereri
ENSDARG00000025386	lsm14b	99	49.074	ENSRNOG00000054557	Lsm14b	99	49.884	Rattus_norvegicus
ENSDARG00000025386	lsm14b	89	50.704	ENSRBIG00000033461	LSM14B	99	49.858	Rhinopithecus_bieti
ENSDARG00000025386	lsm14b	91	51.801	ENSRROG00000042949	LSM14B	91	50.980	Rhinopithecus_roxellana
ENSDARG00000025386	lsm14b	89	50.284	ENSSBOG00000032820	LSM14B	100	50.284	Saimiri_boliviensis_boliviensis
ENSDARG00000025386	lsm14b	90	51.831	ENSSHAG00000015528	LSM14B	96	52.368	Sarcophilus_harrisii
ENSDARG00000025386	lsm14b	91	62.712	ENSSFOG00015004627	lsm14b	92	61.864	Scleropages_formosus
ENSDARG00000025386	lsm14b	91	58.774	ENSSMAG00000012725	lsm14b	99	57.653	Scophthalmus_maximus
ENSDARG00000025386	lsm14b	100	53.030	ENSSMAG00000000135	LSM14B	92	52.877	Scophthalmus_maximus
ENSDARG00000025386	lsm14b	99	57.722	ENSSDUG00000020977	lsm14b	99	57.614	Seriola_dumerili
ENSDARG00000025386	lsm14b	92	55.769	ENSSDUG00000022770	LSM14B	92	56.198	Seriola_dumerili
ENSDARG00000025386	lsm14b	62	46.304	ENSSLDG00000011354	-	89	46.094	Seriola_lalandi_dorsalis
ENSDARG00000025386	lsm14b	54	43.721	ENSSARG00000007749	-	99	42.654	Sorex_araneus
ENSDARG00000025386	lsm14b	92	52.369	ENSSPUG00000014360	LSM14B	93	55.752	Sphenodon_punctatus
ENSDARG00000025386	lsm14b	68	43.116	ENSSPAG00000018854	-	88	38.247	Stegastes_partitus
ENSDARG00000025386	lsm14b	90	57.971	ENSSPAG00000020915	lsm14b	99	56.992	Stegastes_partitus
ENSDARG00000025386	lsm14b	99	56.423	ENSSSCG00000026052	LSM14B	100	41.270	Sus_scrofa
ENSDARG00000025386	lsm14b	90	51.404	ENSTGUG00000007884	LSM14B	100	52.222	Taeniopygia_guttata
ENSDARG00000025386	lsm14b	99	54.242	ENSTRUG00000011354	lsm14b	91	55.056	Takifugu_rubripes
ENSDARG00000025386	lsm14b	92	52.561	ENSTRUG00000001529	LSM14B	92	51.630	Takifugu_rubripes
ENSDARG00000025386	lsm14b	91	56.497	ENSTNIG00000002445	lsm14b	91	56.497	Tetraodon_nigroviridis
ENSDARG00000025386	lsm14b	81	97.436	ENSTTRG00000011043	LSM14B	99	40.247	Tursiops_truncatus
ENSDARG00000025386	lsm14b	98	49.354	ENSUAMG00000025298	LSM14B	99	49.096	Ursus_americanus
ENSDARG00000025386	lsm14b	98	49.354	ENSUMAG00000000480	LSM14B	99	49.096	Ursus_maritimus
ENSDARG00000025386	lsm14b	90	50.704	ENSVVUG00000015920	LSM14B	98	50.423	Vulpes_vulpes
ENSDARG00000025386	lsm14b	86	56.287	ENSXETG00000001997	lsm14b	100	58.580	Xenopus_tropicalis
ENSDARG00000025386	lsm14b	90	52.125	ENSXMAG00000010013	lsm14b	91	52.925	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005737	cytoplasm	20979248.	IDA	Component
GO:0008150	biological_process	-	ND	Process