EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000025421 (Gene tree)
Gene ID: 402828
Gene Symbol: tdrd3
Alias: zgc:77174
Full Name: tudor domain containing 3
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 93019 bases
Position: chr11:42726712-42819730
Accession: ZDB-GENE-040426-19
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129169	TUDOR	PF00567.24	6e-09	1	1
ENSDARP00000030883	TUDOR	PF00567.24	6.5e-09	1	1
ENSDARP00000149904	TUDOR	PF00567.24	6.5e-09	1	1
ENSDARP00000129169	SMN	PF06003.12	1.3e-10	1	1
ENSDARP00000030883	SMN	PF06003.12	4.4e-10	1	1
ENSDARP00000149904	SMN	PF06003.12	4.4e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000179888	-	6996	XM_005169411	ENSDARP00000149904	735 (aa)	XP_005169468	A0A2R8RPE6
ENSDART00000028955	-	6993	-	ENSDARP00000030883	734 (aa)	-	F1RDB0
ENSDART00000156080	-	2792	-	ENSDARP00000129169	733 (aa)	-	X1WG14

Gene Model

Click here to download ENSDARG00000025421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000025421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000025421	tdrd3	99	51.380	ENSG00000083544	TDRD3	100	72.868	Homo_sapiens
ENSDARG00000025421	tdrd3	100	57.915	ENSAPOG00000016078	tdrd3	100	59.045	Acanthochromis_polyacanthus
ENSDARG00000025421	tdrd3	99	51.969	ENSAMEG00000000082	TDRD3	99	51.567	Ailuropoda_melanoleuca
ENSDARG00000025421	tdrd3	100	59.772	ENSACIG00000023900	tdrd3	100	59.898	Amphilophus_citrinellus
ENSDARG00000025421	tdrd3	100	58.816	ENSAOCG00000001410	tdrd3	100	59.950	Amphiprion_ocellaris
ENSDARG00000025421	tdrd3	100	55.416	ENSAPEG00000022810	tdrd3	100	56.747	Amphiprion_percula
ENSDARG00000025421	tdrd3	100	59.446	ENSATEG00000014570	tdrd3	100	59.572	Anabas_testudineus
ENSDARG00000025421	tdrd3	91	51.796	ENSAPLG00000014316	TDRD3	100	51.676	Anas_platyrhynchos
ENSDARG00000025421	tdrd3	99	51.383	ENSACAG00000004923	TDRD3	99	51.120	Anolis_carolinensis
ENSDARG00000025421	tdrd3	78	43.718	ENSANAG00000027927	-	93	44.330	Aotus_nancymaae
ENSDARG00000025421	tdrd3	99	51.475	ENSANAG00000030827	-	99	51.262	Aotus_nancymaae
ENSDARG00000025421	tdrd3	100	59.796	ENSACLG00000022962	tdrd3	100	60.229	Astatotilapia_calliptera
ENSDARG00000025421	tdrd3	100	69.357	ENSAMXG00000006847	tdrd3	100	69.357	Astyanax_mexicanus
ENSDARG00000025421	tdrd3	99	52.180	ENSBTAG00000009308	TDRD3	99	51.915	Bos_taurus
ENSDARG00000025421	tdrd3	99	51.172	ENSCJAG00000003853	TDRD3	99	51.760	Callithrix_jacchus
ENSDARG00000025421	tdrd3	99	52.048	ENSCAFG00000023746	-	98	52.048	Canis_familiaris
ENSDARG00000025421	tdrd3	99	51.984	ENSCAFG00020018076	-	99	52.128	Canis_lupus_dingo
ENSDARG00000025421	tdrd3	66	41.420	ENSCAFG00020015271	-	91	41.884	Canis_lupus_dingo
ENSDARG00000025421	tdrd3	99	51.915	ENSCHIG00000020019	TDRD3	99	51.915	Capra_hircus
ENSDARG00000025421	tdrd3	98	51.402	ENSTSYG00000002254	TDRD3	100	51.802	Carlito_syrichta
ENSDARG00000025421	tdrd3	99	40.975	ENSCAPG00000012313	TDRD3	99	40.053	Cavia_aperea
ENSDARG00000025421	tdrd3	100	45.372	ENSCPOG00000010437	TDRD3	100	44.792	Cavia_porcellus
ENSDARG00000025421	tdrd3	99	51.451	ENSCCAG00000023831	TDRD3	99	51.783	Cebus_capucinus
ENSDARG00000025421	tdrd3	99	50.794	ENSCATG00000029498	TDRD3	99	50.993	Cercocebus_atys
ENSDARG00000025421	tdrd3	99	51.656	ENSCLAG00000002654	TDRD3	100	52.381	Chinchilla_lanigera
ENSDARG00000025421	tdrd3	99	51.181	ENSCSAG00000017640	TDRD3	99	51.391	Chlorocebus_sabaeus
ENSDARG00000025421	tdrd3	55	64.527	ENSCHOG00000012825	TDRD3	67	64.527	Choloepus_hoffmanni
ENSDARG00000025421	tdrd3	99	51.910	ENSCPBG00000026646	TDRD3	98	51.910	Chrysemys_picta_bellii
ENSDARG00000025421	tdrd3	99	50.783	ENSCANG00000034303	TDRD3	99	51.111	Colobus_angolensis_palliatus
ENSDARG00000025421	tdrd3	99	52.042	ENSCGRG00001011297	Tdrd3	99	52.105	Cricetulus_griseus_chok1gshd
ENSDARG00000025421	tdrd3	99	51.921	ENSCGRG00000015535	-	99	51.984	Cricetulus_griseus_crigri
ENSDARG00000025421	tdrd3	100	56.258	ENSCSEG00000000670	tdrd3	100	58.048	Cynoglossus_semilaevis
ENSDARG00000025421	tdrd3	94	58.177	ENSCVAG00000015641	tdrd3	100	59.315	Cyprinodon_variegatus
ENSDARG00000025421	tdrd3	99	51.376	ENSDNOG00000002011	TDRD3	99	51.114	Dasypus_novemcinctus
ENSDARG00000025421	tdrd3	99	50.789	ENSDORG00000008714	Tdrd3	99	51.245	Dipodomys_ordii
ENSDARG00000025421	tdrd3	95	35.397	ENSEBUG00000011812	tdrd3	91	36.536	Eptatretus_burgeri
ENSDARG00000025421	tdrd3	99	52.964	ENSEASG00005015575	TDRD3	99	52.701	Equus_asinus_asinus
ENSDARG00000025421	tdrd3	99	52.964	ENSECAG00000000550	TDRD3	100	51.852	Equus_caballus
ENSDARG00000025421	tdrd3	87	44.910	ENSEEUG00000002192	TDRD3	100	44.611	Erinaceus_europaeus
ENSDARG00000025421	tdrd3	99	48.077	ENSELUG00000000994	tdrd3	99	48.932	Esox_lucius
ENSDARG00000025421	tdrd3	99	52.722	ENSFCAG00000022126	TDRD3	99	52.722	Felis_catus
ENSDARG00000025421	tdrd3	99	51.605	ENSFALG00000007927	TDRD3	99	51.605	Ficedula_albicollis
ENSDARG00000025421	tdrd3	98	52.381	ENSFDAG00000011552	TDRD3	100	52.174	Fukomys_damarensis
ENSDARG00000025421	tdrd3	100	58.060	ENSFHEG00000009513	tdrd3	100	58.942	Fundulus_heteroclitus
ENSDARG00000025421	tdrd3	83	58.000	ENSGMOG00000005733	tdrd3	100	52.470	Gadus_morhua
ENSDARG00000025421	tdrd3	99	52.051	ENSGALG00000016936	TDRD3	99	52.051	Gallus_gallus
ENSDARG00000025421	tdrd3	100	56.821	ENSGAFG00000012013	tdrd3	100	57.697	Gambusia_affinis
ENSDARG00000025421	tdrd3	100	58.077	ENSGACG00000015264	tdrd3	100	59.056	Gasterosteus_aculeatus
ENSDARG00000025421	tdrd3	99	51.948	ENSGAGG00000003173	TDRD3	99	51.818	Gopherus_agassizii
ENSDARG00000025421	tdrd3	98	51.527	ENSGGOG00000025560	TDRD3	100	51.862	Gorilla_gorilla
ENSDARG00000025421	tdrd3	100	59.796	ENSHBUG00000007081	tdrd3	100	60.229	Haplochromis_burtoni
ENSDARG00000025421	tdrd3	100	52.010	ENSHGLG00000018707	-	100	51.684	Heterocephalus_glaber_female
ENSDARG00000025421	tdrd3	98	42.954	ENSHGLG00000010652	-	98	45.299	Heterocephalus_glaber_female
ENSDARG00000025421	tdrd3	99	46.225	ENSHGLG00000009668	-	100	46.032	Heterocephalus_glaber_female
ENSDARG00000025421	tdrd3	87	44.858	ENSHGLG00000014119	-	100	44.560	Heterocephalus_glaber_female
ENSDARG00000025421	tdrd3	76	73.427	ENSHGLG00100017738	-	100	73.427	Heterocephalus_glaber_male
ENSDARG00000025421	tdrd3	98	52.180	ENSHGLG00100010966	-	100	51.847	Heterocephalus_glaber_male
ENSDARG00000025421	tdrd3	100	55.799	ENSHCOG00000002157	tdrd3	100	55.613	Hippocampus_comes
ENSDARG00000025421	tdrd3	100	65.140	ENSIPUG00000012320	tdrd3	100	65.561	Ictalurus_punctatus
ENSDARG00000025421	tdrd3	98	51.129	ENSSTOG00000028945	-	100	51.729	Ictidomys_tridecemlineatus
ENSDARG00000025421	tdrd3	95	50.277	ENSJJAG00000023665	Tdrd3	98	50.205	Jaculus_jaculus
ENSDARG00000025421	tdrd3	100	58.386	ENSKMAG00000021849	tdrd3	100	58.512	Kryptolebias_marmoratus
ENSDARG00000025421	tdrd3	95	56.897	ENSLBEG00000011777	tdrd3	99	58.753	Labrus_bergylta
ENSDARG00000025421	tdrd3	99	50.845	ENSLACG00000001412	TDRD3	99	52.857	Latimeria_chalumnae
ENSDARG00000025421	tdrd3	100	59.157	ENSLOCG00000004652	tdrd3	100	59.157	Lepisosteus_oculatus
ENSDARG00000025421	tdrd3	63	42.570	ENSLAFG00000002705	TDRD3	94	43.173	Loxodonta_africana
ENSDARG00000025421	tdrd3	99	50.794	ENSMFAG00000007606	TDRD3	99	50.993	Macaca_fascicularis
ENSDARG00000025421	tdrd3	99	50.993	ENSMMUG00000007169	TDRD3	99	50.993	Macaca_mulatta
ENSDARG00000025421	tdrd3	99	50.794	ENSMNEG00000002038	TDRD3	99	50.861	Macaca_nemestrina
ENSDARG00000025421	tdrd3	53	40.288	ENSMLEG00000039737	TDRD3	100	40.288	Mandrillus_leucophaeus
ENSDARG00000025421	tdrd3	100	60.000	ENSMAMG00000003998	tdrd3	100	60.000	Mastacembelus_armatus
ENSDARG00000025421	tdrd3	100	59.796	ENSMZEG00005004551	tdrd3	100	60.229	Maylandia_zebra
ENSDARG00000025421	tdrd3	99	52.021	ENSMGAG00000014961	TDRD3	99	52.021	Meleagris_gallopavo
ENSDARG00000025421	tdrd3	99	51.579	ENSMAUG00000012562	Tdrd3	99	51.499	Mesocricetus_auratus
ENSDARG00000025421	tdrd3	99	50.789	ENSMICG00000009982	TDRD3	99	51.383	Microcebus_murinus
ENSDARG00000025421	tdrd3	99	50.656	ENSMOCG00000012962	Tdrd3	99	51.900	Microtus_ochrogaster
ENSDARG00000025421	tdrd3	100	58.460	ENSMMOG00000018156	tdrd3	100	58.460	Mola_mola
ENSDARG00000025421	tdrd3	82	44.355	ENSMODG00000006316	TDRD3	100	45.073	Monodelphis_domestica
ENSDARG00000025421	tdrd3	96	55.875	ENSMALG00000015327	tdrd3	99	56.919	Monopterus_albus
ENSDARG00000025421	tdrd3	100	49.870	MGP_CAROLIEiJ_G0019551	Tdrd3	100	51.166	Mus_caroli
ENSDARG00000025421	tdrd3	100	50.065	ENSMUSG00000022019	Tdrd3	100	51.042	Mus_musculus
ENSDARG00000025421	tdrd3	100	51.943	MGP_PahariEiJ_G0030569	Tdrd3	100	51.933	Mus_pahari
ENSDARG00000025421	tdrd3	100	49.871	MGP_SPRETEiJ_G0020448	Tdrd3	100	50.973	Mus_spretus
ENSDARG00000025421	tdrd3	82	48.038	ENSMPUG00000009630	TDRD3	88	48.509	Mustela_putorius_furo
ENSDARG00000025421	tdrd3	94	48.489	ENSMLUG00000000235	TDRD3	99	48.630	Myotis_lucifugus
ENSDARG00000025421	tdrd3	99	51.905	ENSNGAG00000004523	Tdrd3	99	51.837	Nannospalax_galili
ENSDARG00000025421	tdrd3	100	59.924	ENSNBRG00000018789	tdrd3	100	60.356	Neolamprologus_brichardi
ENSDARG00000025421	tdrd3	99	51.248	ENSNLEG00000015920	TDRD3	99	51.579	Nomascus_leucogenys
ENSDARG00000025421	tdrd3	87	41.902	ENSMEUG00000010114	TDRD3	100	41.902	Notamacropus_eugenii
ENSDARG00000025421	tdrd3	87	42.097	ENSOPRG00000007868	TDRD3	100	42.604	Ochotona_princeps
ENSDARG00000025421	tdrd3	98	51.664	ENSODEG00000000576	-	98	51.459	Octodon_degus
ENSDARG00000025421	tdrd3	99	44.233	ENSODEG00000014559	-	99	44.038	Octodon_degus
ENSDARG00000025421	tdrd3	100	59.796	ENSONIG00000003233	tdrd3	100	60.229	Oreochromis_niloticus
ENSDARG00000025421	tdrd3	99	51.055	ENSOCUG00000014261	TDRD3	99	51.511	Oryctolagus_cuniculus
ENSDARG00000025421	tdrd3	100	57.251	ENSORLG00000004502	tdrd3	100	58.260	Oryzias_latipes
ENSDARG00000025421	tdrd3	98	57.161	ENSORLG00020017271	tdrd3	100	57.161	Oryzias_latipes_hni
ENSDARG00000025421	tdrd3	100	56.242	ENSORLG00015015519	tdrd3	100	57.251	Oryzias_latipes_hsok
ENSDARG00000025421	tdrd3	100	58.291	ENSOMEG00000015668	tdrd3	100	59.311	Oryzias_melastigma
ENSDARG00000025421	tdrd3	99	51.175	ENSOGAG00000005898	TDRD3	99	51.634	Otolemur_garnettii
ENSDARG00000025421	tdrd3	99	51.467	ENSOARG00000006244	TDRD3	99	51.802	Ovis_aries
ENSDARG00000025421	tdrd3	100	50.653	ENSPPAG00000010477	TDRD3	100	51.305	Pan_paniscus
ENSDARG00000025421	tdrd3	98	51.979	ENSPPRG00000008512	TDRD3	100	51.979	Panthera_pardus
ENSDARG00000025421	tdrd3	98	52.886	ENSPTIG00000002537	TDRD3	100	52.886	Panthera_tigris_altaica
ENSDARG00000025421	tdrd3	99	51.380	ENSPTRG00000005918	TDRD3	100	51.406	Pan_troglodytes
ENSDARG00000025421	tdrd3	99	50.983	ENSPANG00000019138	TDRD3	99	51.181	Papio_anubis
ENSDARG00000025421	tdrd3	100	55.644	ENSPKIG00000008894	tdrd3	100	55.644	Paramormyrops_kingsleyae
ENSDARG00000025421	tdrd3	87	49.195	ENSPSIG00000013821	TDRD3	100	49.195	Pelodiscus_sinensis
ENSDARG00000025421	tdrd3	100	58.112	ENSPMGG00000015263	tdrd3	100	58.777	Periophthalmus_magnuspinnatus
ENSDARG00000025421	tdrd3	99	51.373	ENSPEMG00000004287	Tdrd3	99	51.436	Peromyscus_maniculatus_bairdii
ENSDARG00000025421	tdrd3	99	50.654	ENSPCIG00000011476	-	99	51.373	Phascolarctos_cinereus
ENSDARG00000025421	tdrd3	100	59.274	ENSPFOG00000012450	tdrd3	100	60.182	Poecilia_formosa
ENSDARG00000025421	tdrd3	91	57.555	ENSPLAG00000016397	tdrd3	97	58.516	Poecilia_latipinna
ENSDARG00000025421	tdrd3	91	57.300	ENSPMEG00000019048	tdrd3	99	58.264	Poecilia_mexicana
ENSDARG00000025421	tdrd3	100	57.987	ENSPREG00000021145	tdrd3	100	59.119	Poecilia_reticulata
ENSDARG00000025421	tdrd3	99	51.114	ENSPPYG00000005401	TDRD3	99	51.444	Pongo_abelii
ENSDARG00000025421	tdrd3	87	46.945	ENSPCAG00000014959	TDRD3	100	46.726	Procavia_capensis
ENSDARG00000025421	tdrd3	75	69.725	ENSPCOG00000019937	TDRD3	100	69.725	Propithecus_coquereli
ENSDARG00000025421	tdrd3	87	49.703	ENSPVAG00000010549	TDRD3	100	49.703	Pteropus_vampyrus
ENSDARG00000025421	tdrd3	100	59.669	ENSPNYG00000001569	tdrd3	100	60.102	Pundamilia_nyererei
ENSDARG00000025421	tdrd3	100	67.424	ENSPNAG00000026219	tdrd3	100	67.424	Pygocentrus_nattereri
ENSDARG00000025421	tdrd3	87	47.024	ENSRNOG00000009034	Tdrd3	100	47.337	Rattus_norvegicus
ENSDARG00000025421	tdrd3	99	49.803	ENSRBIG00000031218	TDRD3	99	50.262	Rhinopithecus_bieti
ENSDARG00000025421	tdrd3	99	51.245	ENSRROG00000044516	TDRD3	99	51.312	Rhinopithecus_roxellana
ENSDARG00000025421	tdrd3	98	51.779	ENSSBOG00000022790	TDRD3	100	52.174	Saimiri_boliviensis_boliviensis
ENSDARG00000025421	tdrd3	98	47.632	ENSSHAG00000011994	TDRD3	100	48.221	Sarcophilus_harrisii
ENSDARG00000025421	tdrd3	100	58.784	ENSSFOG00015005175	tdrd3	96	58.704	Scleropages_formosus
ENSDARG00000025421	tdrd3	95	55.894	ENSSMAG00000011677	tdrd3	99	57.407	Scophthalmus_maximus
ENSDARG00000025421	tdrd3	100	58.913	ENSSDUG00000004594	tdrd3	100	59.470	Seriola_dumerili
ENSDARG00000025421	tdrd3	100	56.414	ENSSLDG00000002918	tdrd3	99	57.368	Seriola_lalandi_dorsalis
ENSDARG00000025421	tdrd3	87	48.301	ENSSARG00000003028	TDRD3	100	48.597	Sorex_araneus
ENSDARG00000025421	tdrd3	99	50.651	ENSSPUG00000001191	TDRD3	99	50.450	Sphenodon_punctatus
ENSDARG00000025421	tdrd3	100	58.994	ENSSPAG00000005342	tdrd3	100	60.202	Stegastes_partitus
ENSDARG00000025421	tdrd3	100	51.871	ENSSSCG00000009449	TDRD3	100	51.871	Sus_scrofa
ENSDARG00000025421	tdrd3	99	52.896	ENSTGUG00000012476	-	99	52.638	Taeniopygia_guttata
ENSDARG00000025421	tdrd3	95	56.075	ENSTRUG00000017194	tdrd3	95	57.009	Takifugu_rubripes
ENSDARG00000025421	tdrd3	100	58.073	ENSTNIG00000005230	tdrd3	100	58.854	Tetraodon_nigroviridis
ENSDARG00000025421	tdrd3	87	45.007	ENSTTRG00000010071	TDRD3	99	45.007	Tursiops_truncatus
ENSDARG00000025421	tdrd3	91	51.489	ENSUAMG00000017369	-	98	51.489	Ursus_americanus
ENSDARG00000025421	tdrd3	99	47.431	ENSUMAG00000014526	TDRD3	100	50.000	Ursus_maritimus
ENSDARG00000025421	tdrd3	87	49.331	ENSVPAG00000011763	TDRD3	100	49.256	Vicugna_pacos
ENSDARG00000025421	tdrd3	99	52.058	ENSVVUG00000029140	TDRD3	97	50.914	Vulpes_vulpes
ENSDARG00000025421	tdrd3	99	57.707	ENSXCOG00000001875	tdrd3	97	58.665	Xiphophorus_couchianus
ENSDARG00000025421	tdrd3	100	58.134	ENSXMAG00000005103	tdrd3	100	59.016	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003682	chromatin binding	-	ISS	Function
GO:0003713	transcription coactivator activity	-	ISS	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0035064	methylated histone binding	-	ISS	Function
GO:0035145	exon-exon junction complex	-	ISS	Component