EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000025789 (Gene tree)
Gene ID: 560622
Gene Symbol: chd4b
Alias: si:ch211-57k11.10|wu:fb44b12|wu:fd12d03
Full Name: chromodomain helicase DNA binding protein 4b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 29341 bases
Position: chr16:31761825-31791165
Accession: ZDB-GENE-030131-4532
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124629	ResIII	PF04851.15	1.8e-09	1	1
ENSDARP00000152065	ResIII	PF04851.15	1.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000148389	-	7365	XM_021466938	ENSDARP00000124629	1953 (aa)	XP_021322613	F1RBT2
ENSDART00000184655	-	7984	XM_021466940	ENSDARP00000152065	1953 (aa)	XP_021322615	F1RBT2

Gene Model

Click here to download ENSDARG00000025789's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000025789's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000025789	chd4b	93	68.430	ENSDARG00000105083	chd5	94	71.598
ENSDARG00000025789	chd4b	87	80.000	ENSDARG00000021405	chd3	94	80.000
ENSDARG00000025789	chd4b	100	77.492	ENSDARG00000063535	chd4a	100	77.856

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000025789	chd4b	98	65.818	ENSG00000116254	CHD5	96	73.896	Homo_sapiens
ENSDARG00000025789	chd4b	96	66.460	ENSAMEG00000009880	CHD5	95	66.356	Ailuropoda_melanoleuca
ENSDARG00000025789	chd4b	93	67.553	ENSACIG00000012582	chd5	95	67.812	Amphilophus_citrinellus
ENSDARG00000025789	chd4b	93	68.600	ENSAOCG00000020356	chd5	88	68.536	Amphiprion_ocellaris
ENSDARG00000025789	chd4b	93	65.667	ENSAPLG00000015475	CHD5	97	64.441	Anas_platyrhynchos
ENSDARG00000025789	chd4b	96	65.796	ENSACAG00000002441	CHD5	94	65.691	Anolis_carolinensis
ENSDARG00000025789	chd4b	88	65.583	ENSANAG00000001078	CHD5	91	67.817	Aotus_nancymaae
ENSDARG00000025789	chd4b	83	67.440	ENSACLG00000003012	chd5	94	63.266	Astatotilapia_calliptera
ENSDARG00000025789	chd4b	85	73.585	ENSAMXG00000008921	chd5	95	73.585	Astyanax_mexicanus
ENSDARG00000025789	chd4b	92	67.622	ENSBTAG00000040477	CHD5	98	67.655	Bos_taurus
ENSDARG00000025789	chd4b	98	68.468	ENSCJAG00000000101	CHD5	94	66.839	Callithrix_jacchus
ENSDARG00000025789	chd4b	92	68.194	ENSCAFG00000019545	CHD5	98	67.493	Canis_familiaris
ENSDARG00000025789	chd4b	96	68.127	ENSCAFG00020008689	CHD5	91	67.810	Canis_lupus_dingo
ENSDARG00000025789	chd4b	87	79.724	ENSCHIG00000015027	CHD5	95	65.177	Capra_hircus
ENSDARG00000025789	chd4b	88	80.660	ENSTSYG00000033991	CHD5	95	64.154	Carlito_syrichta
ENSDARG00000025789	chd4b	93	69.273	ENSCAPG00000009294	CHD5	95	67.970	Cavia_aperea
ENSDARG00000025789	chd4b	93	69.273	ENSCPOG00000025080	CHD5	95	67.970	Cavia_porcellus
ENSDARG00000025789	chd4b	90	80.660	ENSCCAG00000024756	CHD5	94	66.632	Cebus_capucinus
ENSDARG00000025789	chd4b	96	66.356	ENSCATG00000043011	CHD5	94	66.357	Cercocebus_atys
ENSDARG00000025789	chd4b	93	69.126	ENSCLAG00000010589	CHD5	95	68.002	Chinchilla_lanigera
ENSDARG00000025789	chd4b	98	64.145	ENSCSAG00000000733	CHD5	94	66.925	Chlorocebus_sabaeus
ENSDARG00000025789	chd4b	92	68.030	ENSCPBG00000019363	CHD5	98	67.761	Chrysemys_picta_bellii
ENSDARG00000025789	chd4b	96	66.788	ENSCANG00000032302	CHD5	94	66.787	Colobus_angolensis_palliatus
ENSDARG00000025789	chd4b	56	69.356	ENSCGRG00001011042	Chd5	99	69.175	Cricetulus_griseus_chok1gshd
ENSDARG00000025789	chd4b	96	68.127	ENSCGRG00000011341	Chd5	95	68.006	Cricetulus_griseus_crigri
ENSDARG00000025789	chd4b	93	67.206	ENSDNOG00000046342	CHD5	89	68.272	Dasypus_novemcinctus
ENSDARG00000025789	chd4b	96	67.756	ENSDORG00000005923	Chd5	95	68.091	Dipodomys_ordii
ENSDARG00000025789	chd4b	98	66.028	ENSEASG00005021464	CHD5	94	76.498	Equus_asinus_asinus
ENSDARG00000025789	chd4b	85	79.091	ENSECAG00000025043	CHD5	94	76.498	Equus_caballus
ENSDARG00000025789	chd4b	65	83.007	ENSEEUG00000002772	CHD5	62	83.007	Erinaceus_europaeus
ENSDARG00000025789	chd4b	85	83.256	ENSELUG00000010742	chd5	92	83.256	Esox_lucius
ENSDARG00000025789	chd4b	96	66.822	ENSFCAG00000006319	CHD5	94	66.736	Felis_catus
ENSDARG00000025789	chd4b	92	67.934	ENSFALG00000009740	CHD5	94	67.063	Ficedula_albicollis
ENSDARG00000025789	chd4b	96	67.507	ENSFDAG00000012881	CHD5	96	66.444	Fukomys_damarensis
ENSDARG00000025789	chd4b	93	67.987	ENSGALG00000000747	CHD5	94	67.134	Gallus_gallus
ENSDARG00000025789	chd4b	56	70.018	ENSGACG00000004389	chd5	92	69.848	Gasterosteus_aculeatus
ENSDARG00000025789	chd4b	85	80.930	ENSGAGG00000001590	CHD5	99	78.261	Gopherus_agassizii
ENSDARG00000025789	chd4b	96	66.511	ENSGGOG00000000708	CHD5	95	66.959	Gorilla_gorilla
ENSDARG00000025789	chd4b	83	68.187	ENSHBUG00000013453	chd5	94	63.946	Haplochromis_burtoni
ENSDARG00000025789	chd4b	96	67.759	ENSHGLG00000018184	CHD5	97	66.857	Heterocephalus_glaber_female
ENSDARG00000025789	chd4b	96	63.076	ENSHGLG00100013261	CHD5	94	62.481	Heterocephalus_glaber_male
ENSDARG00000025789	chd4b	93	68.433	ENSIPUG00000005446	chd5	95	68.309	Ictalurus_punctatus
ENSDARG00000025789	chd4b	96	67.423	ENSSTOG00000002778	CHD5	95	67.823	Ictidomys_tridecemlineatus
ENSDARG00000025789	chd4b	96	67.689	ENSJJAG00000019072	Chd5	96	67.100	Jaculus_jaculus
ENSDARG00000025789	chd4b	96	68.273	ENSLOCG00000004944	chd5	95	66.395	Lepisosteus_oculatus
ENSDARG00000025789	chd4b	96	66.478	ENSLAFG00000006348	CHD5	98	67.518	Loxodonta_africana
ENSDARG00000025789	chd4b	96	66.511	ENSMFAG00000033993	CHD5	98	67.867	Macaca_fascicularis
ENSDARG00000025789	chd4b	96	66.355	ENSMMUG00000016838	CHD5	94	68.268	Macaca_mulatta
ENSDARG00000025789	chd4b	98	69.060	ENSMNEG00000040044	CHD5	94	66.873	Macaca_nemestrina
ENSDARG00000025789	chd4b	76	68.818	ENSMLEG00000039166	CHD5	95	64.358	Mandrillus_leucophaeus
ENSDARG00000025789	chd4b	83	66.071	ENSMZEG00005000841	chd5	90	68.914	Maylandia_zebra
ENSDARG00000025789	chd4b	93	68.133	ENSMGAG00000001055	CHD5	94	67.187	Meleagris_gallopavo
ENSDARG00000025789	chd4b	95	74.167	ENSMICG00000017862	CHD5	94	74.167	Microcebus_murinus
ENSDARG00000025789	chd4b	96	67.808	ENSMOCG00000011049	Chd5	94	67.704	Microtus_ochrogaster
ENSDARG00000025789	chd4b	70	80.093	ENSMODG00000006294	CHD5	69	75.143	Monodelphis_domestica
ENSDARG00000025789	chd4b	93	68.120	ENSMALG00000002831	chd5	94	66.288	Monopterus_albus
ENSDARG00000025789	chd4b	96	67.028	MGP_CAROLIEiJ_G0026857	Chd5	95	66.459	Mus_caroli
ENSDARG00000025789	chd4b	96	68.391	ENSMUSG00000005045	Chd5	94	67.797	Mus_musculus
ENSDARG00000025789	chd4b	96	68.354	MGP_PahariEiJ_G0029205	Chd5	94	67.863	Mus_pahari
ENSDARG00000025789	chd4b	96	68.338	MGP_SPRETEiJ_G0027850	Chd5	94	67.725	Mus_spretus
ENSDARG00000025789	chd4b	96	65.262	ENSMPUG00000007122	CHD5	95	65.299	Mustela_putorius_furo
ENSDARG00000025789	chd4b	96	66.116	ENSNGAG00000019812	Chd5	92	66.011	Nannospalax_galili
ENSDARG00000025789	chd4b	96	65.335	ENSNLEG00000010320	CHD5	95	65.407	Nomascus_leucogenys
ENSDARG00000025789	chd4b	82	66.317	ENSOPRG00000004304	CHD5	82	65.896	Ochotona_princeps
ENSDARG00000025789	chd4b	93	68.966	ENSODEG00000010262	CHD5	95	67.582	Octodon_degus
ENSDARG00000025789	chd4b	92	67.355	ENSONIG00000000619	chd5	91	67.135	Oreochromis_niloticus
ENSDARG00000025789	chd4b	93	58.925	ENSOANG00000001819	CHD5	95	58.043	Ornithorhynchus_anatinus
ENSDARG00000025789	chd4b	98	65.449	ENSOGAG00000005703	CHD5	92	67.666	Otolemur_garnettii
ENSDARG00000025789	chd4b	96	65.716	ENSOARG00000013425	CHD5	95	65.908	Ovis_aries
ENSDARG00000025789	chd4b	96	66.511	ENSPPAG00000034048	CHD5	95	66.959	Pan_paniscus
ENSDARG00000025789	chd4b	96	66.408	ENSPPRG00000009453	CHD5	94	66.321	Panthera_pardus
ENSDARG00000025789	chd4b	96	61.409	ENSPTIG00000013926	CHD5	95	62.072	Panthera_tigris_altaica
ENSDARG00000025789	chd4b	98	65.818	ENSPTRG00000000075	CHD5	94	66.959	Pan_troglodytes
ENSDARG00000025789	chd4b	98	65.767	ENSPANG00000006765	CHD5	94	66.873	Papio_anubis
ENSDARG00000025789	chd4b	86	77.778	ENSPKIG00000004282	chd5	91	75.697	Paramormyrops_kingsleyae
ENSDARG00000025789	chd4b	92	64.006	ENSPSIG00000006414	CHD5	97	62.597	Pelodiscus_sinensis
ENSDARG00000025789	chd4b	66	71.274	ENSPEMG00000014799	Chd5	96	71.241	Peromyscus_maniculatus_bairdii
ENSDARG00000025789	chd4b	99	65.929	ENSPCIG00000028310	CHD5	93	66.649	Phascolarctos_cinereus
ENSDARG00000025789	chd4b	93	66.338	ENSPLAG00000005343	chd5	90	70.667	Poecilia_latipinna
ENSDARG00000025789	chd4b	91	80.660	ENSPPYG00000001952	CHD5	95	75.000	Pongo_abelii
ENSDARG00000025789	chd4b	98	65.751	ENSPCOG00000022930	CHD5	94	66.805	Propithecus_coquereli
ENSDARG00000025789	chd4b	93	67.266	ENSPNYG00000003183	chd5	95	67.542	Pundamilia_nyererei
ENSDARG00000025789	chd4b	96	66.943	ENSRNOG00000011268	Chd5	95	66.719	Rattus_norvegicus
ENSDARG00000025789	chd4b	96	65.026	ENSRBIG00000032140	CHD5	92	71.487	Rhinopithecus_bieti
ENSDARG00000025789	chd4b	96	66.304	ENSRROG00000041146	CHD5	94	66.908	Rhinopithecus_roxellana
ENSDARG00000025789	chd4b	96	64.956	ENSSBOG00000001955	CHD5	98	69.425	Saimiri_boliviensis_boliviensis
ENSDARG00000025789	chd4b	91	64.418	ENSSHAG00000018641	CHD5	96	63.660	Sarcophilus_harrisii
ENSDARG00000025789	chd4b	88	82.488	ENSSFOG00015006296	chd5	90	82.488	Scleropages_formosus
ENSDARG00000025789	chd4b	85	78.541	ENSSDUG00000017526	chd5	93	76.667	Seriola_dumerili
ENSDARG00000025789	chd4b	88	80.841	ENSSPUG00000010622	CHD5	96	61.784	Sphenodon_punctatus
ENSDARG00000025789	chd4b	98	65.918	ENSSSCG00000003366	CHD5	98	67.747	Sus_scrofa
ENSDARG00000025789	chd4b	92	66.069	ENSTGUG00000002634	-	99	65.508	Taeniopygia_guttata
ENSDARG00000025789	chd4b	53	68.411	ENSTNIG00000004346	chd5	99	68.286	Tetraodon_nigroviridis
ENSDARG00000025789	chd4b	96	67.033	ENSTTRG00000010468	CHD5	94	66.876	Tursiops_truncatus
ENSDARG00000025789	chd4b	96	68.213	ENSUAMG00000024509	CHD5	95	76.995	Ursus_americanus
ENSDARG00000025789	chd4b	95	65.543	ENSUMAG00000024173	CHD5	96	70.086	Ursus_maritimus
ENSDARG00000025789	chd4b	88	77.619	ENSVVUG00000026480	CHD5	94	77.619	Vulpes_vulpes
ENSDARG00000025789	chd4b	96	64.650	ENSXETG00000002904	chd5	96	67.510	Xenopus_tropicalis
ENSDARG00000025789	chd4b	57	76.667	ENSXCOG00000014202	chd5	94	76.667	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function