EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000026098 (Gene tree)
Gene ID: 494576
Gene Symbol: si:dkey-13a21.4
Alias: zgc:110195
Full Name: si:dkey-13a21.4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5072 bases
Position: chr11:25430851-25435922
Accession: ZDB-GENE-040724-163
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000105621	MMR_HSR1	PF01926.23	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000164999	-	802	XM_021479607	ENSDARP00000137679	229 (aa)	XP_021335282	A0A0R4IQH0
ENSDART00000126403	-	1128	XM_021479609	ENSDARP00000105621	205 (aa)	XP_021335284	F1QYV4

Gene Model

Click here to download ENSDARG00000026098's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000026098's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000026098	si:dkey-13a21.4	85	30.857	ENSDARG00000098497	hrasa	88	30.857
ENSDARG00000026098	si:dkey-13a21.4	78	38.750	ENSDARG00000041450	rab11a	73	38.750
ENSDARG00000026098	si:dkey-13a21.4	77	30.539	ENSDARG00000015611	rasl11b	66	30.539
ENSDARG00000026098	si:dkey-13a21.4	89	34.021	ENSDARG00000010977	rab34b	79	35.122
ENSDARG00000026098	si:dkey-13a21.4	79	39.264	ENSDARG00000056479	rab1bb	79	39.264
ENSDARG00000026098	si:dkey-13a21.4	79	40.741	ENSDARG00000052263	rab1aa	79	40.741
ENSDARG00000026098	si:dkey-13a21.4	82	39.645	ENSDARG00000103934	megf8	95	39.645
ENSDARG00000026098	si:dkey-13a21.4	96	36.275	ENSDARG00000037967	si:dkey-16l2.16	95	37.255
ENSDARG00000026098	si:dkey-13a21.4	80	51.205	ENSDARG00000103391	rab9b	82	51.205
ENSDARG00000026098	si:dkey-13a21.4	99	35.814	ENSDARG00000003257	zgc:101559	88	35.814
ENSDARG00000026098	si:dkey-13a21.4	81	59.281	ENSDARG00000087243	zgc:100918	81	59.281
ENSDARG00000026098	si:dkey-13a21.4	90	54.167	ENSDARG00000021287	rab7b	94	54.167
ENSDARG00000026098	si:dkey-13a21.4	96	33.333	ENSDARG00000014058	rab36	78	33.333
ENSDARG00000026098	si:dkey-13a21.4	83	33.721	ENSDARG00000100379	si:dkey-34d22.2	92	33.721
ENSDARG00000026098	si:dkey-13a21.4	93	37.436	ENSDARG00000007257	rab5ab	88	37.436
ENSDARG00000026098	si:dkey-13a21.4	79	40.123	ENSDARG00000029663	rab1ab	79	40.123
ENSDARG00000026098	si:dkey-13a21.4	81	42.169	ENSDARG00000055291	rab18a	80	42.169
ENSDARG00000026098	si:dkey-13a21.4	82	36.471	ENSDARG00000074246	rab14	77	36.471
ENSDARG00000026098	si:dkey-13a21.4	83	51.744	ENSDARG00000045027	rab9a	86	51.744
ENSDARG00000026098	si:dkey-13a21.4	83	32.164	ENSDARG00000063321	rabl2	75	32.164
ENSDARG00000026098	si:dkey-13a21.4	96	33.333	ENSDARG00000090086	rab11bb	93	33.333
ENSDARG00000026098	si:dkey-13a21.4	88	30.556	ENSDARG00000013161	zgc:55558	91	30.556
ENSDARG00000026098	si:dkey-13a21.4	91	32.632	ENSDARG00000034522	rab6ba	89	32.632
ENSDARG00000026098	si:dkey-13a21.4	87	37.430	ENSDARG00000058044	rab1ba	89	37.430
ENSDARG00000026098	si:dkey-13a21.4	95	38.776	ENSDARG00000034771	rab13	95	38.776
ENSDARG00000026098	si:dkey-13a21.4	87	34.637	ENSDARG00000014340	rab11al	81	34.637
ENSDARG00000026098	si:dkey-13a21.4	79	38.037	ENSDARG00000020261	rab2a	75	38.037
ENSDARG00000026098	si:dkey-13a21.4	74	41.558	ENSDARG00000052290	rab33ba	63	41.558
ENSDARG00000026098	si:dkey-13a21.4	79	37.500	ENSDARG00000057394	rab33a	69	37.500
ENSDARG00000026098	si:dkey-13a21.4	77	40.000	ENSDARG00000089428	rab12	66	40.000
ENSDARG00000026098	si:dkey-13a21.4	83	30.588	ENSDARG00000010844	kras	86	30.588
ENSDARG00000026098	si:dkey-13a21.4	85	32.768	ENSDARG00000075285	si:ch73-116o1.2	94	30.049
ENSDARG00000026098	si:dkey-13a21.4	81	37.725	ENSDARG00000026484	rab15	77	37.725
ENSDARG00000026098	si:dkey-13a21.4	68	40.000	ENSDARG00000018107	rab3da	81	40.000
ENSDARG00000026098	si:dkey-13a21.4	83	41.860	ENSDARG00000058425	rab35b	97	38.500
ENSDARG00000026098	si:dkey-13a21.4	79	37.423	ENSDARG00000004151	rab23	72	37.714
ENSDARG00000026098	si:dkey-13a21.4	100	51.691	ENSDARG00000020497	rab7a	100	51.691
ENSDARG00000026098	si:dkey-13a21.4	93	37.629	ENSDARG00000018602	rab5aa	88	37.629
ENSDARG00000026098	si:dkey-13a21.4	85	38.636	ENSDARG00000033056	zgc:171927	82	38.636
ENSDARG00000026098	si:dkey-13a21.4	78	37.500	ENSDARG00000041878	rab11ba	75	37.342
ENSDARG00000026098	si:dkey-13a21.4	77	38.994	ENSDARG00000015807	rab22a	79	38.994
ENSDARG00000026098	si:dkey-13a21.4	85	31.429	ENSDARG00000005651	hrasb	100	30.719
ENSDARG00000026098	si:dkey-13a21.4	76	35.256	ENSDARG00000036252	rras2	81	35.928
ENSDARG00000026098	si:dkey-13a21.4	77	38.994	ENSDARG00000114797	rab3b	71	38.994
ENSDARG00000026098	si:dkey-13a21.4	97	32.057	ENSDARG00000036501	rab39bb	97	32.057
ENSDARG00000026098	si:dkey-13a21.4	97	33.668	ENSDARG00000103714	rab6a	93	33.668
ENSDARG00000026098	si:dkey-13a21.4	78	34.568	ENSDARG00000070916	dnajc27	59	34.568
ENSDARG00000026098	si:dkey-13a21.4	86	39.106	ENSDARG00000029885	rab41	82	39.106
ENSDARG00000026098	si:dkey-13a21.4	96	39.801	ENSDARG00000098344	rab18b	95	39.801
ENSDARG00000026098	si:dkey-13a21.4	93	36.979	ENSDARG00000058800	rab25a	90	36.979
ENSDARG00000026098	si:dkey-13a21.4	76	33.333	ENSDARG00000006553	rras	85	33.918
ENSDARG00000026098	si:dkey-13a21.4	97	32.536	ENSDARG00000034215	rab42a	97	32.536
ENSDARG00000026098	si:dkey-13a21.4	90	32.979	ENSDARG00000045628	rab34a	77	32.979
ENSDARG00000026098	si:dkey-13a21.4	96	34.328	ENSDARG00000052954	rab25b	94	34.328
ENSDARG00000026098	si:dkey-13a21.4	82	35.294	ENSDARG00000035188	rab14l	77	35.294
ENSDARG00000026098	si:dkey-13a21.4	84	33.333	ENSDARG00000062865	mras	84	32.075
ENSDARG00000026098	si:dkey-13a21.4	97	32.338	ENSDARG00000031343	rab6bb	94	32.338
ENSDARG00000026098	si:dkey-13a21.4	97	33.014	ENSDARG00000019312	rab39ba	97	33.014
ENSDARG00000026098	si:dkey-13a21.4	85	39.205	ENSDARG00000037884	rab30	86	39.205
ENSDARG00000026098	si:dkey-13a21.4	85	41.243	ENSDARG00000102078	CABZ01072548.1	86	41.243

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000026098	si:dkey-13a21.4	99	62.255	ENSACIG00000011024	si:dkey-13a21.4	100	62.255	Amphilophus_citrinellus
ENSDARG00000026098	si:dkey-13a21.4	95	63.590	ENSAOCG00000020491	si:dkey-13a21.4	96	63.590	Amphiprion_ocellaris
ENSDARG00000026098	si:dkey-13a21.4	95	63.590	ENSAPEG00000023338	si:dkey-13a21.4	88	63.590	Amphiprion_percula
ENSDARG00000026098	si:dkey-13a21.4	99	62.255	ENSATEG00000014958	si:dkey-13a21.4	100	62.255	Anabas_testudineus
ENSDARG00000026098	si:dkey-13a21.4	97	49.495	ENSACAG00000012345	-	97	49.495	Anolis_carolinensis
ENSDARG00000026098	si:dkey-13a21.4	95	62.564	ENSACLG00000021109	si:dkey-13a21.4	95	62.564	Astatotilapia_calliptera
ENSDARG00000026098	si:dkey-13a21.4	100	61.429	ENSAMXG00000032663	si:dkey-13a21.4	97	61.429	Astyanax_mexicanus
ENSDARG00000026098	si:dkey-13a21.4	80	56.287	WBGene00004271	rab-7	80	56.287	Caenorhabditis_elegans
ENSDARG00000026098	si:dkey-13a21.4	99	62.745	ENSCVAG00000001150	si:dkey-13a21.4	100	62.745	Cyprinodon_variegatus
ENSDARG00000026098	si:dkey-13a21.4	91	50.265	ENSDNOG00000043559	-	100	47.596	Dasypus_novemcinctus
ENSDARG00000026098	si:dkey-13a21.4	95	63.590	ENSFHEG00000002502	si:dkey-13a21.4	95	63.590	Fundulus_heteroclitus
ENSDARG00000026098	si:dkey-13a21.4	99	61.765	ENSGAFG00000020102	si:dkey-13a21.4	100	61.765	Gambusia_affinis
ENSDARG00000026098	si:dkey-13a21.4	95	63.077	ENSHBUG00000014023	si:dkey-13a21.4	95	63.077	Haplochromis_burtoni
ENSDARG00000026098	si:dkey-13a21.4	81	68.072	ENSKMAG00000021039	si:dkey-13a21.4	70	68.072	Kryptolebias_marmoratus
ENSDARG00000026098	si:dkey-13a21.4	99	60.591	ENSLBEG00000018180	si:dkey-13a21.4	100	60.591	Labrus_bergylta
ENSDARG00000026098	si:dkey-13a21.4	100	62.927	ENSLOCG00000014749	si:dkey-13a21.4	100	62.927	Lepisosteus_oculatus
ENSDARG00000026098	si:dkey-13a21.4	88	52.222	ENSLAFG00000028984	-	88	52.222	Loxodonta_africana
ENSDARG00000026098	si:dkey-13a21.4	95	64.615	ENSMAMG00000021095	si:dkey-13a21.4	96	64.615	Mastacembelus_armatus
ENSDARG00000026098	si:dkey-13a21.4	95	62.564	ENSMZEG00005010220	si:dkey-13a21.4	95	62.564	Maylandia_zebra
ENSDARG00000026098	si:dkey-13a21.4	95	63.077	ENSNBRG00000023214	si:dkey-13a21.4	95	63.077	Neolamprologus_brichardi
ENSDARG00000026098	si:dkey-13a21.4	95	62.564	ENSONIG00000020296	si:dkey-13a21.4	96	62.564	Oreochromis_niloticus
ENSDARG00000026098	si:dkey-13a21.4	99	64.216	ENSORLG00000025098	si:dkey-13a21.4	100	64.216	Oryzias_latipes
ENSDARG00000026098	si:dkey-13a21.4	100	63.592	ENSORLG00020019465	si:dkey-13a21.4	100	63.592	Oryzias_latipes_hni
ENSDARG00000026098	si:dkey-13a21.4	100	64.078	ENSORLG00015015121	si:dkey-13a21.4	100	64.078	Oryzias_latipes_hsok
ENSDARG00000026098	si:dkey-13a21.4	100	62.136	ENSPKIG00000008691	si:dkey-13a21.4	99	62.136	Paramormyrops_kingsleyae
ENSDARG00000026098	si:dkey-13a21.4	93	61.780	ENSPMGG00000023170	si:dkey-13a21.4	93	61.421	Periophthalmus_magnuspinnatus
ENSDARG00000026098	si:dkey-13a21.4	99	61.765	ENSPFOG00000015409	si:dkey-13a21.4	100	61.765	Poecilia_formosa
ENSDARG00000026098	si:dkey-13a21.4	99	61.765	ENSPLAG00000019688	si:dkey-13a21.4	100	61.765	Poecilia_latipinna
ENSDARG00000026098	si:dkey-13a21.4	99	61.765	ENSPMEG00000019159	si:dkey-13a21.4	100	61.765	Poecilia_mexicana
ENSDARG00000026098	si:dkey-13a21.4	99	61.765	ENSPREG00000022241	si:dkey-13a21.4	100	61.765	Poecilia_reticulata
ENSDARG00000026098	si:dkey-13a21.4	95	62.564	ENSPNYG00000018613	si:dkey-13a21.4	95	62.564	Pundamilia_nyererei
ENSDARG00000026098	si:dkey-13a21.4	81	51.765	YML001W	YPT7	82	51.765	Saccharomyces_cerevisiae
ENSDARG00000026098	si:dkey-13a21.4	100	61.463	ENSSFOG00015009566	si:dkey-13a21.4	100	61.463	Scleropages_formosus
ENSDARG00000026098	si:dkey-13a21.4	95	62.051	ENSSMAG00000013945	si:dkey-13a21.4	95	62.051	Scophthalmus_maximus
ENSDARG00000026098	si:dkey-13a21.4	99	62.255	ENSSDUG00000019738	si:dkey-13a21.4	100	62.255	Seriola_dumerili
ENSDARG00000026098	si:dkey-13a21.4	99	62.255	ENSSLDG00000011597	si:dkey-13a21.4	100	62.255	Seriola_lalandi_dorsalis
ENSDARG00000026098	si:dkey-13a21.4	97	54.545	ENSXETG00000014257	mgc75872	98	53.769	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005764	lysosome	21873635.	IBA	Component
GO:0005770	late endosome	21873635.	IBA	Component
GO:0005774	vacuolar membrane	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0008333	endosome to lysosome transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0045335	phagocytic vesicle	21873635.	IBA	Component
GO:0090385	phagosome-lysosome fusion	21873635.	IBA	Process