EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000026180 (Gene tree)
Gene ID: 393951
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 14658 bases
Position: chr15:28248052-28262709
Accession: ZDB-GENE-030131-577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000121091	RRM_4	PF10598.9	4.8e-48	1	1
ENSDARP00000143855	RRM_4	PF10598.9	4.9e-48	1	1
ENSDARP00000143855	U5_2-snRNA_bdg	PF10597.9	1.1e-73	1	1
ENSDARP00000121091	U5_2-snRNA_bdg	PF10597.9	1.2e-73	1	1
ENSDARP00000143855	PRO8NT	PF08082.11	9.4e-87	1	1
ENSDARP00000121091	PRO8NT	PF08082.11	9.6e-87	1	1
ENSDARP00000143855	U6-snRNA_bdg	PF10596.9	2.8e-89	1	1
ENSDARP00000121091	U6-snRNA_bdg	PF10596.9	2.8e-89	1	1
ENSDARP00000143855	PROCN	PF08083.11	8.1e-236	1	1
ENSDARP00000121091	PROCN	PF08083.11	8.2e-236	1	1
ENSDARP00000143855	PRP8_domainIV	PF12134.8	6.6e-130	1	1
ENSDARP00000121091	PRP8_domainIV	PF12134.8	6.7e-130	1	1
ENSDARP00000121091	PROCT	PF08084.11	4.4e-53	1	1
ENSDARP00000143855	PROCT	PF08084.11	8.8e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134601	-	7534	XM_005157646	ENSDARP00000121091	2342 (aa)	XP_005157703	A0A0R4J8E6
ENSDART00000175022	-	8641	-	ENSDARP00000143855	2328 (aa)	-	A0A286YA65

Gene Model

Click here to download ENSDARG00000026180's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000026180's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000026180	prpf8	100	97.609	ENSG00000174231	PRPF8	100	97.609	Homo_sapiens
ENSDARG00000026180	prpf8	100	98.933	ENSAPOG00000010079	prpf8	100	98.933	Acanthochromis_polyacanthus
ENSDARG00000026180	prpf8	100	97.609	ENSAMEG00000007940	PRPF8	100	97.609	Ailuropoda_melanoleuca
ENSDARG00000026180	prpf8	100	97.070	ENSACIG00000018280	prpf8	100	97.070	Amphilophus_citrinellus
ENSDARG00000026180	prpf8	100	98.890	ENSAOCG00000010725	prpf8	100	98.890	Amphiprion_ocellaris
ENSDARG00000026180	prpf8	100	98.890	ENSAPEG00000014397	prpf8	100	98.890	Amphiprion_percula
ENSDARG00000026180	prpf8	100	98.249	ENSATEG00000010062	prpf8	100	98.249	Anabas_testudineus
ENSDARG00000026180	prpf8	96	98.176	ENSAPLG00000010357	PRPF8	100	98.176	Anas_platyrhynchos
ENSDARG00000026180	prpf8	83	95.981	ENSACAG00000014784	PRPF8	99	95.981	Anolis_carolinensis
ENSDARG00000026180	prpf8	100	97.609	ENSANAG00000032629	PRPF8	100	97.609	Aotus_nancymaae
ENSDARG00000026180	prpf8	100	98.553	ENSACLG00000020858	prpf8	100	98.553	Astatotilapia_calliptera
ENSDARG00000026180	prpf8	100	98.676	ENSAMXG00000020291	prpf8	100	98.676	Astyanax_mexicanus
ENSDARG00000026180	prpf8	100	97.609	ENSBTAG00000011488	PRPF8	100	97.609	Bos_taurus
ENSDARG00000026180	prpf8	99	86.638	WBGene00004187	prp-8	99	86.981	Caenorhabditis_elegans
ENSDARG00000026180	prpf8	100	97.609	ENSCJAG00000001911	PRPF8	100	97.609	Callithrix_jacchus
ENSDARG00000026180	prpf8	100	97.609	ENSCAFG00000019221	PRPF8	100	97.609	Canis_familiaris
ENSDARG00000026180	prpf8	96	98.215	ENSCAFG00020009943	PRPF8	100	98.215	Canis_lupus_dingo
ENSDARG00000026180	prpf8	100	97.609	ENSCHIG00000017499	PRPF8	100	97.609	Capra_hircus
ENSDARG00000026180	prpf8	100	97.609	ENSTSYG00000014120	PRPF8	100	97.609	Carlito_syrichta
ENSDARG00000026180	prpf8	96	95.991	ENSCAPG00000009459	PRPF8	99	95.991	Cavia_aperea
ENSDARG00000026180	prpf8	100	97.609	ENSCPOG00000010379	PRPF8	100	97.609	Cavia_porcellus
ENSDARG00000026180	prpf8	100	97.609	ENSCCAG00000031983	-	100	97.609	Cebus_capucinus
ENSDARG00000026180	prpf8	100	97.609	ENSCATG00000038595	PRPF8	100	97.609	Cercocebus_atys
ENSDARG00000026180	prpf8	100	97.609	ENSCLAG00000004388	PRPF8	100	97.609	Chinchilla_lanigera
ENSDARG00000026180	prpf8	100	97.609	ENSCSAG00000013929	PRPF8	100	97.609	Chlorocebus_sabaeus
ENSDARG00000026180	prpf8	82	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSDARG00000026180	prpf8	100	97.652	ENSCPBG00000020409	PRPF8	100	97.652	Chrysemys_picta_bellii
ENSDARG00000026180	prpf8	98	93.349	ENSCSAVG00000007825	-	100	91.366	Ciona_savignyi
ENSDARG00000026180	prpf8	100	97.609	ENSCANG00000043088	PRPF8	100	97.609	Colobus_angolensis_palliatus
ENSDARG00000026180	prpf8	73	99.016	ENSCGRG00000005129	Prpf8	100	99.016	Cricetulus_griseus_crigri
ENSDARG00000026180	prpf8	100	98.804	ENSCSEG00000007905	prpf8	100	98.804	Cynoglossus_semilaevis
ENSDARG00000026180	prpf8	94	97.751	ENSDNOG00000018471	PRPF8	99	97.751	Dasypus_novemcinctus
ENSDARG00000026180	prpf8	84	96.328	ENSDORG00000006185	Prpf8	96	96.328	Dipodomys_ordii
ENSDARG00000026180	prpf8	99	91.438	FBgn0033688	Prp8	97	92.009	Drosophila_melanogaster
ENSDARG00000026180	prpf8	100	92.314	ENSETEG00000017592	PRPF8	100	92.314	Echinops_telfairi
ENSDARG00000026180	prpf8	99	93.490	ENSEBUG00000006548	prpf8	99	93.490	Eptatretus_burgeri
ENSDARG00000026180	prpf8	100	97.609	ENSEASG00005009514	PRPF8	100	97.609	Equus_asinus_asinus
ENSDARG00000026180	prpf8	97	98.242	ENSECAG00000021318	PRPF8	100	98.242	Equus_caballus
ENSDARG00000026180	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSDARG00000026180	prpf8	98	97.557	ENSELUG00000007120	prpf8	99	97.557	Esox_lucius
ENSDARG00000026180	prpf8	100	97.609	ENSFCAG00000006297	PRPF8	100	97.609	Felis_catus
ENSDARG00000026180	prpf8	100	97.652	ENSFALG00000006628	PRPF8	100	97.652	Ficedula_albicollis
ENSDARG00000026180	prpf8	100	97.609	ENSFDAG00000004711	PRPF8	100	97.609	Fukomys_damarensis
ENSDARG00000026180	prpf8	100	98.463	ENSFHEG00000021084	prpf8	100	98.463	Fundulus_heteroclitus
ENSDARG00000026180	prpf8	100	96.326	ENSGMOG00000002028	prpf8	99	96.326	Gadus_morhua
ENSDARG00000026180	prpf8	100	97.652	ENSGALG00000002943	PRPF8	100	97.652	Gallus_gallus
ENSDARG00000026180	prpf8	99	98.375	ENSGAFG00000010337	prpf8	99	98.375	Gambusia_affinis
ENSDARG00000026180	prpf8	100	98.676	ENSGACG00000008504	prpf8	100	98.634	Gasterosteus_aculeatus
ENSDARG00000026180	prpf8	100	97.694	ENSGAGG00000008350	PRPF8	100	97.694	Gopherus_agassizii
ENSDARG00000026180	prpf8	100	97.609	ENSGGOG00000005516	PRPF8	100	97.609	Gorilla_gorilla
ENSDARG00000026180	prpf8	100	98.548	ENSHBUG00000016192	prpf8	100	98.548	Haplochromis_burtoni
ENSDARG00000026180	prpf8	100	97.609	ENSHGLG00000012029	PRPF8	100	97.609	Heterocephalus_glaber_female
ENSDARG00000026180	prpf8	100	97.609	ENSHGLG00100016494	PRPF8	100	97.609	Heterocephalus_glaber_male
ENSDARG00000026180	prpf8	100	98.634	ENSHCOG00000016414	prpf8	100	98.634	Hippocampus_comes
ENSDARG00000026180	prpf8	100	98.847	ENSIPUG00000023230	prpf8	100	98.847	Ictalurus_punctatus
ENSDARG00000026180	prpf8	100	97.609	ENSSTOG00000005128	PRPF8	100	97.609	Ictidomys_tridecemlineatus
ENSDARG00000026180	prpf8	100	95.474	ENSJJAG00000021159	Prpf8	100	95.474	Jaculus_jaculus
ENSDARG00000026180	prpf8	99	98.714	ENSKMAG00000016118	prpf8	99	98.714	Kryptolebias_marmoratus
ENSDARG00000026180	prpf8	100	98.804	ENSLBEG00000026903	prpf8	100	98.804	Labrus_bergylta
ENSDARG00000026180	prpf8	95	95.590	ENSLACG00000010479	PRPF8	99	98.357	Latimeria_chalumnae
ENSDARG00000026180	prpf8	99	98.294	ENSLOCG00000005409	prpf8	99	98.294	Lepisosteus_oculatus
ENSDARG00000026180	prpf8	100	97.609	ENSLAFG00000015445	PRPF8	100	97.609	Loxodonta_africana
ENSDARG00000026180	prpf8	100	97.609	ENSMFAG00000039995	PRPF8	100	97.609	Macaca_fascicularis
ENSDARG00000026180	prpf8	100	97.609	ENSMMUG00000004820	PRPF8	100	97.609	Macaca_mulatta
ENSDARG00000026180	prpf8	100	97.609	ENSMNEG00000035713	PRPF8	100	97.609	Macaca_nemestrina
ENSDARG00000026180	prpf8	100	97.609	ENSMLEG00000037937	PRPF8	100	97.609	Mandrillus_leucophaeus
ENSDARG00000026180	prpf8	100	98.804	ENSMAMG00000008919	prpf8	100	98.804	Mastacembelus_armatus
ENSDARG00000026180	prpf8	100	98.553	ENSMZEG00005015073	prpf8	100	98.553	Maylandia_zebra
ENSDARG00000026180	prpf8	100	97.652	ENSMGAG00000004769	PRPF8	100	97.652	Meleagris_gallopavo
ENSDARG00000026180	prpf8	100	97.609	ENSMICG00000010320	PRPF8	100	97.609	Microcebus_murinus
ENSDARG00000026180	prpf8	100	97.609	ENSMOCG00000016838	Prpf8	100	97.609	Microtus_ochrogaster
ENSDARG00000026180	prpf8	100	98.377	ENSMMOG00000011887	prpf8	100	98.377	Mola_mola
ENSDARG00000026180	prpf8	100	97.609	ENSMODG00000010480	PRPF8	100	97.609	Monodelphis_domestica
ENSDARG00000026180	prpf8	97	98.262	ENSMALG00000003558	prpf8	100	98.262	Monopterus_albus
ENSDARG00000026180	prpf8	100	97.566	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.566	Mus_caroli
ENSDARG00000026180	prpf8	100	97.566	ENSMUSG00000020850	Prpf8	100	97.566	Mus_musculus
ENSDARG00000026180	prpf8	100	97.523	MGP_PahariEiJ_G0017877	Prpf8	100	97.523	Mus_pahari
ENSDARG00000026180	prpf8	100	97.566	MGP_SPRETEiJ_G0017583	Prpf8	100	97.566	Mus_spretus
ENSDARG00000026180	prpf8	100	97.609	ENSMPUG00000013227	PRPF8	100	97.609	Mustela_putorius_furo
ENSDARG00000026180	prpf8	100	97.484	ENSMLUG00000002666	PRPF8	100	97.484	Myotis_lucifugus
ENSDARG00000026180	prpf8	100	95.858	ENSNGAG00000005305	Prpf8	100	95.858	Nannospalax_galili
ENSDARG00000026180	prpf8	100	98.596	ENSNBRG00000013127	prpf8	100	98.596	Neolamprologus_brichardi
ENSDARG00000026180	prpf8	97	96.636	ENSNLEG00000000897	PRPF8	98	96.636	Nomascus_leucogenys
ENSDARG00000026180	prpf8	98	96.393	ENSMEUG00000015999	PRPF8	100	96.393	Notamacropus_eugenii
ENSDARG00000026180	prpf8	100	95.858	ENSOPRG00000003102	PRPF8	100	95.730	Ochotona_princeps
ENSDARG00000026180	prpf8	100	97.609	ENSODEG00000008468	PRPF8	100	97.609	Octodon_degus
ENSDARG00000026180	prpf8	100	98.596	ENSONIG00000008153	prpf8	100	98.596	Oreochromis_niloticus
ENSDARG00000026180	prpf8	82	99.159	ENSOANG00000004250	PRPF8	97	99.159	Ornithorhynchus_anatinus
ENSDARG00000026180	prpf8	100	97.609	ENSOCUG00000000081	PRPF8	100	97.609	Oryctolagus_cuniculus
ENSDARG00000026180	prpf8	100	98.003	ENSORLG00000008036	prpf8	100	98.003	Oryzias_latipes
ENSDARG00000026180	prpf8	100	97.962	ENSORLG00020021070	prpf8	100	97.962	Oryzias_latipes_hni
ENSDARG00000026180	prpf8	100	98.003	ENSORLG00015002340	prpf8	100	98.003	Oryzias_latipes_hsok
ENSDARG00000026180	prpf8	100	96.559	ENSOMEG00000016866	prpf8	100	96.559	Oryzias_melastigma
ENSDARG00000026180	prpf8	100	97.484	ENSOARG00000013312	PRPF8	100	97.484	Ovis_aries
ENSDARG00000026180	prpf8	100	97.609	ENSPPAG00000042753	PRPF8	100	97.609	Pan_paniscus
ENSDARG00000026180	prpf8	100	97.609	ENSPPRG00000008746	PRPF8	100	97.609	Panthera_pardus
ENSDARG00000026180	prpf8	100	97.523	ENSPTIG00000019200	PRPF8	100	97.523	Panthera_tigris_altaica
ENSDARG00000026180	prpf8	100	97.609	ENSPTRG00000039576	PRPF8	100	97.609	Pan_troglodytes
ENSDARG00000026180	prpf8	98	98.219	ENSPANG00000024607	PRPF8	98	98.219	Papio_anubis
ENSDARG00000026180	prpf8	100	98.508	ENSPKIG00000011201	prpf8	100	98.508	Paramormyrops_kingsleyae
ENSDARG00000026180	prpf8	100	97.609	ENSPSIG00000013393	PRPF8	100	97.609	Pelodiscus_sinensis
ENSDARG00000026180	prpf8	100	97.609	ENSPEMG00000021699	Prpf8	100	97.609	Peromyscus_maniculatus_bairdii
ENSDARG00000026180	prpf8	96	93.853	ENSPMAG00000005438	prpf8	100	93.898	Petromyzon_marinus
ENSDARG00000026180	prpf8	100	97.609	ENSPCIG00000022603	PRPF8	100	98.215	Phascolarctos_cinereus
ENSDARG00000026180	prpf8	100	98.049	ENSPFOG00000007005	prpf8	100	98.049	Poecilia_formosa
ENSDARG00000026180	prpf8	100	97.011	ENSPLAG00000020777	prpf8	100	97.011	Poecilia_latipinna
ENSDARG00000026180	prpf8	100	98.049	ENSPMEG00000004051	prpf8	100	98.049	Poecilia_mexicana
ENSDARG00000026180	prpf8	100	98.463	ENSPREG00000021902	prpf8	100	98.463	Poecilia_reticulata
ENSDARG00000026180	prpf8	100	97.609	ENSPPYG00000007777	PRPF8	100	97.609	Pongo_abelii
ENSDARG00000026180	prpf8	89	98.066	ENSPCAG00000008938	PRPF8	90	97.030	Procavia_capensis
ENSDARG00000026180	prpf8	100	97.609	ENSPCOG00000015182	PRPF8	100	97.609	Propithecus_coquereli
ENSDARG00000026180	prpf8	93	98.503	ENSPVAG00000002134	PRPF8	93	98.503	Pteropus_vampyrus
ENSDARG00000026180	prpf8	100	98.548	ENSPNYG00000016356	prpf8	100	98.548	Pundamilia_nyererei
ENSDARG00000026180	prpf8	100	98.847	ENSPNAG00000009247	prpf8	100	98.847	Pygocentrus_nattereri
ENSDARG00000026180	prpf8	100	97.566	ENSRNOG00000003495	Prpf8	100	97.566	Rattus_norvegicus
ENSDARG00000026180	prpf8	100	97.609	ENSRBIG00000031219	PRPF8	100	97.769	Rhinopithecus_bieti
ENSDARG00000026180	prpf8	100	97.609	ENSRROG00000038014	PRPF8	100	97.769	Rhinopithecus_roxellana
ENSDARG00000026180	prpf8	98	62.602	YHR165C	PRP8	95	62.688	Saccharomyces_cerevisiae
ENSDARG00000026180	prpf8	100	97.609	ENSSBOG00000029717	PRPF8	100	97.609	Saimiri_boliviensis_boliviensis
ENSDARG00000026180	prpf8	100	97.566	ENSSHAG00000006167	PRPF8	100	97.566	Sarcophilus_harrisii
ENSDARG00000026180	prpf8	100	98.420	ENSSFOG00015013905	prpf8	100	98.420	Scleropages_formosus
ENSDARG00000026180	prpf8	100	98.804	ENSSMAG00000017736	prpf8	100	98.804	Scophthalmus_maximus
ENSDARG00000026180	prpf8	100	98.847	ENSSDUG00000003029	prpf8	100	98.847	Seriola_dumerili
ENSDARG00000026180	prpf8	68	99.687	ENSSLDG00000017096	prpf8	100	99.687	Seriola_lalandi_dorsalis
ENSDARG00000026180	prpf8	87	94.336	ENSSARG00000002892	PRPF8	87	94.336	Sorex_araneus
ENSDARG00000026180	prpf8	100	97.438	ENSSPUG00000007463	PRPF8	100	97.438	Sphenodon_punctatus
ENSDARG00000026180	prpf8	100	98.335	ENSSPAG00000015639	prpf8	100	98.335	Stegastes_partitus
ENSDARG00000026180	prpf8	100	97.609	ENSSSCG00000017817	PRPF8	100	97.609	Sus_scrofa
ENSDARG00000026180	prpf8	52	98.604	ENSTGUG00000015597	-	95	98.604	Taeniopygia_guttata
ENSDARG00000026180	prpf8	100	97.652	ENSTGUG00000005648	-	100	97.652	Taeniopygia_guttata
ENSDARG00000026180	prpf8	100	98.548	ENSTRUG00000015906	prpf8	100	98.548	Takifugu_rubripes
ENSDARG00000026180	prpf8	95	99.403	ENSTNIG00000003460	prpf8	99	99.403	Tetraodon_nigroviridis
ENSDARG00000026180	prpf8	93	98.775	ENSTBEG00000006431	PRPF8	93	98.775	Tupaia_belangeri
ENSDARG00000026180	prpf8	100	97.054	ENSTTRG00000006869	PRPF8	100	97.054	Tursiops_truncatus
ENSDARG00000026180	prpf8	54	96.445	ENSUAMG00000015644	-	96	96.445	Ursus_americanus
ENSDARG00000026180	prpf8	100	97.353	ENSUMAG00000009385	PRPF8	100	97.353	Ursus_maritimus
ENSDARG00000026180	prpf8	71	98.621	ENSVPAG00000006063	-	71	98.621	Vicugna_pacos
ENSDARG00000026180	prpf8	100	97.609	ENSVVUG00000021695	PRPF8	99	97.609	Vulpes_vulpes
ENSDARG00000026180	prpf8	100	97.525	ENSXETG00000022259	prpf8	100	97.525	Xenopus_tropicalis
ENSDARG00000026180	prpf8	100	98.463	ENSXCOG00000012775	prpf8	100	98.463	Xiphophorus_couchianus
ENSDARG00000026180	prpf8	100	98.506	ENSXMAG00000008505	prpf8	100	98.506	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	21873635.	IBA	Process
GO:0000244	spliceosomal tri-snRNP complex assembly	23714367.	IMP	Process
GO:0000386	second spliceosomal transesterification activity	21873635.	IBA	Function
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0017070	U6 snRNA binding	-	IEA	Function
GO:0030619	U1 snRNA binding	21873635.	IBA	Function
GO:0030620	U2 snRNA binding	21873635.	IBA	Function
GO:0030623	U5 snRNA binding	21873635.	IBA	Function
GO:0030623	U5 snRNA binding	-	IEA	Function
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function