EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000026183 (Gene tree)
Gene ID: 445170
Gene Symbol: polr2eb
Alias: fk97g10|polr2e|wu:fk97g10|zgc:101098
Full Name: polymerase (RNA) II (DNA directed) polypeptide E%2C b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4995 bases
Position: chr22:17606588-17611582
Accession: ZDB-GENE-040801-83
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000028718	RNA_pol_Rpb5_N	PF03871.14	1.1e-34	1	1
ENSDARP00000028718	RNA_pol_Rpb5_C	PF01191.19	1.7e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000132447	-	552	-	-	- (aa)	-	-
ENSDART00000141439	-	624	-	-	- (aa)	-	-
ENSDART00000035670	-	827	-	ENSDARP00000028718	210 (aa)	-	Q6DEG5

Gene Model

Click here to download ENSDARG00000026183's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG
dre04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000026183's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000026183	polr2eb	100	94.762	ENSDARG00000074274	POLR2E	100	94.762

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000026183	polr2eb	100	94.286	ENSG00000099817	POLR2E	100	94.286	Homo_sapiens
ENSDARG00000026183	polr2eb	100	99.048	ENSAPOG00000002935	polr2eb	100	99.048	Acanthochromis_polyacanthus
ENSDARG00000026183	polr2eb	100	94.762	ENSAMEG00000003159	POLR2E	100	94.762	Ailuropoda_melanoleuca
ENSDARG00000026183	polr2eb	100	85.714	ENSACIG00000024371	polr2eb	100	85.714	Amphilophus_citrinellus
ENSDARG00000026183	polr2eb	100	99.048	ENSAOCG00000018166	polr2eb	100	99.048	Amphiprion_ocellaris
ENSDARG00000026183	polr2eb	100	99.048	ENSAPEG00000009000	polr2eb	100	99.048	Amphiprion_percula
ENSDARG00000026183	polr2eb	100	99.048	ENSATEG00000023760	polr2eb	100	99.048	Anabas_testudineus
ENSDARG00000026183	polr2eb	100	94.762	ENSANAG00000038488	POLR2E	100	94.762	Aotus_nancymaae
ENSDARG00000026183	polr2eb	100	98.571	ENSACLG00000005254	polr2eb	100	98.571	Astatotilapia_calliptera
ENSDARG00000026183	polr2eb	100	98.571	ENSAMXG00000018915	POLR2E	100	98.571	Astyanax_mexicanus
ENSDARG00000026183	polr2eb	100	94.762	ENSBTAG00000020776	POLR2E	100	94.762	Bos_taurus
ENSDARG00000026183	polr2eb	99	78.365	WBGene00019246	rpb-5	99	78.365	Caenorhabditis_elegans
ENSDARG00000026183	polr2eb	67	90.714	ENSCJAG00000007666	-	77	90.714	Callithrix_jacchus
ENSDARG00000026183	polr2eb	100	91.905	ENSCAFG00000019546	POLR2E	100	91.905	Canis_familiaris
ENSDARG00000026183	polr2eb	100	94.762	ENSCAFG00020017111	POLR2E	100	94.762	Canis_lupus_dingo
ENSDARG00000026183	polr2eb	100	94.762	ENSCHIG00000014151	POLR2E	100	94.762	Capra_hircus
ENSDARG00000026183	polr2eb	100	77.674	ENSTSYG00000026377	POLR2E	100	77.674	Carlito_syrichta
ENSDARG00000026183	polr2eb	91	94.271	ENSCAPG00000010843	POLR2E	93	94.271	Cavia_aperea
ENSDARG00000026183	polr2eb	100	94.762	ENSCPOG00000001542	POLR2E	100	94.762	Cavia_porcellus
ENSDARG00000026183	polr2eb	100	94.762	ENSCCAG00000025658	POLR2E	100	94.762	Cebus_capucinus
ENSDARG00000026183	polr2eb	100	94.762	ENSCATG00000008926	POLR2E	100	94.762	Cercocebus_atys
ENSDARG00000026183	polr2eb	98	72.683	ENSCLAG00000009238	-	100	72.683	Chinchilla_lanigera
ENSDARG00000026183	polr2eb	100	94.286	ENSCLAG00000014874	-	100	94.286	Chinchilla_lanigera
ENSDARG00000026183	polr2eb	100	94.762	ENSCSAG00000012336	POLR2E	100	94.762	Chlorocebus_sabaeus
ENSDARG00000026183	polr2eb	100	95.238	ENSCPBG00000009702	POLR2E	100	95.238	Chrysemys_picta_bellii
ENSDARG00000026183	polr2eb	100	85.714	ENSCING00000024933	-	99	85.714	Ciona_intestinalis
ENSDARG00000026183	polr2eb	100	94.762	ENSCANG00000025560	POLR2E	100	94.762	Colobus_angolensis_palliatus
ENSDARG00000026183	polr2eb	100	94.762	ENSCGRG00001022927	Polr2e	100	94.762	Cricetulus_griseus_chok1gshd
ENSDARG00000026183	polr2eb	100	88.372	ENSCGRG00000016441	Polr2e	100	88.372	Cricetulus_griseus_crigri
ENSDARG00000026183	polr2eb	100	97.143	ENSCSEG00000007107	polr2eb	92	97.143	Cynoglossus_semilaevis
ENSDARG00000026183	polr2eb	100	99.048	ENSCVAG00000019940	polr2eb	100	99.048	Cyprinodon_variegatus
ENSDARG00000026183	polr2eb	90	94.211	ENSDNOG00000044994	POLR2E	84	94.211	Dasypus_novemcinctus
ENSDARG00000026183	polr2eb	100	94.762	ENSDORG00000001154	Polr2e	100	94.762	Dipodomys_ordii
ENSDARG00000026183	polr2eb	99	85.167	FBgn0033571	Rpb5	99	85.167	Drosophila_melanogaster
ENSDARG00000026183	polr2eb	75	92.994	ENSEBUG00000010159	-	76	92.994	Eptatretus_burgeri
ENSDARG00000026183	polr2eb	69	88.966	ENSEASG00005021615	POLR2E	67	83.333	Equus_asinus_asinus
ENSDARG00000026183	polr2eb	91	93.194	ENSECAG00000011124	POLR2E	100	81.905	Equus_caballus
ENSDARG00000026183	polr2eb	100	96.190	ENSELUG00000020646	polr2e	100	96.190	Esox_lucius
ENSDARG00000026183	polr2eb	100	97.143	ENSELUG00000005815	POLR2E	100	97.143	Esox_lucius
ENSDARG00000026183	polr2eb	100	94.286	ENSFCAG00000007318	POLR2E	100	94.286	Felis_catus
ENSDARG00000026183	polr2eb	91	94.792	ENSFALG00000013986	POLR2E	99	94.792	Ficedula_albicollis
ENSDARG00000026183	polr2eb	100	94.762	ENSFDAG00000014539	POLR2E	100	94.762	Fukomys_damarensis
ENSDARG00000026183	polr2eb	100	99.048	ENSFHEG00000022398	polr2eb	100	99.048	Fundulus_heteroclitus
ENSDARG00000026183	polr2eb	100	97.619	ENSGMOG00000007615	polr2eb	100	97.619	Gadus_morhua
ENSDARG00000026183	polr2eb	100	95.238	ENSGALG00000002591	POLR2E	100	95.238	Gallus_gallus
ENSDARG00000026183	polr2eb	100	98.571	ENSGAFG00000005087	polr2eb	100	98.571	Gambusia_affinis
ENSDARG00000026183	polr2eb	100	97.619	ENSGACG00000013247	polr2eb	100	97.619	Gasterosteus_aculeatus
ENSDARG00000026183	polr2eb	100	95.238	ENSGAGG00000008356	POLR2E	100	95.238	Gopherus_agassizii
ENSDARG00000026183	polr2eb	100	94.762	ENSGGOG00000011267	POLR2E	100	94.762	Gorilla_gorilla
ENSDARG00000026183	polr2eb	68	95.070	ENSHBUG00000011099	polr2eb	100	95.070	Haplochromis_burtoni
ENSDARG00000026183	polr2eb	100	94.762	ENSHGLG00000013330	POLR2E	100	94.762	Heterocephalus_glaber_female
ENSDARG00000026183	polr2eb	100	94.762	ENSHGLG00100011014	POLR2E	100	94.762	Heterocephalus_glaber_male
ENSDARG00000026183	polr2eb	53	94.643	ENSHCOG00000012099	-	88	94.643	Hippocampus_comes
ENSDARG00000026183	polr2eb	100	97.619	ENSHCOG00000000906	polr2eb	100	97.619	Hippocampus_comes
ENSDARG00000026183	polr2eb	100	99.048	ENSIPUG00000019801	polr2e	100	99.048	Ictalurus_punctatus
ENSDARG00000026183	polr2eb	100	94.762	ENSSTOG00000002853	POLR2E	100	94.762	Ictidomys_tridecemlineatus
ENSDARG00000026183	polr2eb	100	76.667	ENSJJAG00000003145	-	100	76.667	Jaculus_jaculus
ENSDARG00000026183	polr2eb	100	94.762	ENSJJAG00000016595	-	100	94.762	Jaculus_jaculus
ENSDARG00000026183	polr2eb	77	77.640	ENSJJAG00000015812	-	100	77.640	Jaculus_jaculus
ENSDARG00000026183	polr2eb	100	99.048	ENSKMAG00000005954	polr2eb	100	99.048	Kryptolebias_marmoratus
ENSDARG00000026183	polr2eb	100	99.048	ENSLBEG00000024802	polr2eb	100	99.048	Labrus_bergylta
ENSDARG00000026183	polr2eb	100	96.190	ENSLACG00000013686	POLR2E	100	96.190	Latimeria_chalumnae
ENSDARG00000026183	polr2eb	77	98.148	ENSLOCG00000004599	POLR2E	100	98.148	Lepisosteus_oculatus
ENSDARG00000026183	polr2eb	100	75.943	ENSLAFG00000025587	POLR2E	100	75.943	Loxodonta_africana
ENSDARG00000026183	polr2eb	100	94.762	ENSMFAG00000002884	POLR2E	100	94.762	Macaca_fascicularis
ENSDARG00000026183	polr2eb	100	94.762	ENSMMUG00000013927	POLR2E	100	94.762	Macaca_mulatta
ENSDARG00000026183	polr2eb	100	94.762	ENSMNEG00000034046	-	100	94.762	Macaca_nemestrina
ENSDARG00000026183	polr2eb	100	63.981	ENSMNEG00000033452	-	100	63.981	Macaca_nemestrina
ENSDARG00000026183	polr2eb	92	77.720	ENSMLEG00000012405	POLR2E	94	77.720	Mandrillus_leucophaeus
ENSDARG00000026183	polr2eb	100	99.048	ENSMAMG00000018703	polr2eb	100	99.048	Mastacembelus_armatus
ENSDARG00000026183	polr2eb	90	98.421	ENSMZEG00005010796	polr2eb	96	98.421	Maylandia_zebra
ENSDARG00000026183	polr2eb	100	94.313	ENSMGAG00000003769	POLR2E	100	94.313	Meleagris_gallopavo
ENSDARG00000026183	polr2eb	100	64.286	ENSMAUG00000011003	-	100	64.286	Mesocricetus_auratus
ENSDARG00000026183	polr2eb	92	93.782	ENSMAUG00000010125	-	100	94.241	Mesocricetus_auratus
ENSDARG00000026183	polr2eb	100	94.762	ENSMICG00000013063	POLR2E	100	94.762	Microcebus_murinus
ENSDARG00000026183	polr2eb	100	94.762	ENSMOCG00000013414	Polr2e	100	94.762	Microtus_ochrogaster
ENSDARG00000026183	polr2eb	100	84.286	ENSMMOG00000001161	polr2eb	100	84.286	Mola_mola
ENSDARG00000026183	polr2eb	91	87.958	ENSMMOG00000001167	polr2eb	88	87.958	Mola_mola
ENSDARG00000026183	polr2eb	100	95.238	ENSMODG00000005494	POLR2E	100	95.238	Monodelphis_domestica
ENSDARG00000026183	polr2eb	100	98.095	ENSMALG00000021888	polr2eb	100	98.095	Monopterus_albus
ENSDARG00000026183	polr2eb	100	94.762	MGP_CAROLIEiJ_G0015561	Polr2e	100	94.762	Mus_caroli
ENSDARG00000026183	polr2eb	100	94.762	ENSMUSG00000004667	Polr2e	100	94.762	Mus_musculus
ENSDARG00000026183	polr2eb	100	94.762	MGP_PahariEiJ_G0030974	Polr2e	100	94.762	Mus_pahari
ENSDARG00000026183	polr2eb	100	94.762	MGP_SPRETEiJ_G0016379	Polr2e	100	94.762	Mus_spretus
ENSDARG00000026183	polr2eb	100	93.810	ENSMPUG00000008953	POLR2E	100	93.810	Mustela_putorius_furo
ENSDARG00000026183	polr2eb	100	94.762	ENSMLUG00000013193	POLR2E	100	94.762	Myotis_lucifugus
ENSDARG00000026183	polr2eb	66	89.130	ENSMLUG00000006376	-	100	78.395	Myotis_lucifugus
ENSDARG00000026183	polr2eb	100	94.762	ENSNGAG00000001147	Polr2e	100	94.762	Nannospalax_galili
ENSDARG00000026183	polr2eb	85	71.508	ENSNGAG00000017344	-	96	71.508	Nannospalax_galili
ENSDARG00000026183	polr2eb	100	85.714	ENSNBRG00000022772	polr2eb	100	85.714	Neolamprologus_brichardi
ENSDARG00000026183	polr2eb	100	72.381	ENSNLEG00000031364	-	100	72.381	Nomascus_leucogenys
ENSDARG00000026183	polr2eb	100	90.995	ENSNLEG00000001207	-	100	90.995	Nomascus_leucogenys
ENSDARG00000026183	polr2eb	100	83.333	ENSOPRG00000008331	POLR2E	100	83.333	Ochotona_princeps
ENSDARG00000026183	polr2eb	89	84.409	ENSODEG00000007985	-	100	84.409	Octodon_degus
ENSDARG00000026183	polr2eb	100	94.762	ENSODEG00000013230	-	100	94.762	Octodon_degus
ENSDARG00000026183	polr2eb	100	68.095	ENSODEG00000011490	-	100	68.095	Octodon_degus
ENSDARG00000026183	polr2eb	100	98.095	ENSONIG00000002519	polr2eb	100	98.095	Oreochromis_niloticus
ENSDARG00000026183	polr2eb	100	98.571	ENSORLG00000015346	polr2eb	100	98.571	Oryzias_latipes
ENSDARG00000026183	polr2eb	100	98.571	ENSORLG00020020700	polr2e	100	98.571	Oryzias_latipes_hni
ENSDARG00000026183	polr2eb	100	98.571	ENSORLG00015016842	polr2e	100	98.571	Oryzias_latipes_hsok
ENSDARG00000026183	polr2eb	100	99.048	ENSOMEG00000002709	polr2eb	100	99.048	Oryzias_melastigma
ENSDARG00000026183	polr2eb	100	94.762	ENSOGAG00000012311	POLR2E	100	94.762	Otolemur_garnettii
ENSDARG00000026183	polr2eb	100	94.762	ENSOARG00000010994	POLR2E	100	94.762	Ovis_aries
ENSDARG00000026183	polr2eb	91	94.241	ENSPPAG00000003145	POLR2E	100	94.241	Pan_paniscus
ENSDARG00000026183	polr2eb	100	94.286	ENSPPRG00000000777	POLR2E	100	94.286	Panthera_pardus
ENSDARG00000026183	polr2eb	91	72.396	ENSPTIG00000012237	POLR2E	98	88.816	Panthera_tigris_altaica
ENSDARG00000026183	polr2eb	100	94.762	ENSPTRG00000010183	POLR2E	100	94.762	Pan_troglodytes
ENSDARG00000026183	polr2eb	100	94.762	ENSPANG00000018011	POLR2E	100	94.762	Papio_anubis
ENSDARG00000026183	polr2eb	100	97.619	ENSPKIG00000009607	POLR2E	100	97.619	Paramormyrops_kingsleyae
ENSDARG00000026183	polr2eb	100	97.619	ENSPKIG00000024123	POLR2E	100	97.619	Paramormyrops_kingsleyae
ENSDARG00000026183	polr2eb	98	91.220	ENSPSIG00000002870	POLR2E	99	91.220	Pelodiscus_sinensis
ENSDARG00000026183	polr2eb	100	86.190	ENSPMGG00000014354	polr2eb	100	86.190	Periophthalmus_magnuspinnatus
ENSDARG00000026183	polr2eb	100	94.762	ENSPEMG00000023261	Polr2e	100	94.762	Peromyscus_maniculatus_bairdii
ENSDARG00000026183	polr2eb	90	94.709	ENSPCIG00000007312	POLR2E	75	94.709	Phascolarctos_cinereus
ENSDARG00000026183	polr2eb	100	98.571	ENSPFOG00000005734	polr2eb	100	98.571	Poecilia_formosa
ENSDARG00000026183	polr2eb	100	98.571	ENSPLAG00000014496	polr2eb	100	98.571	Poecilia_latipinna
ENSDARG00000026183	polr2eb	100	98.571	ENSPMEG00000008053	polr2eb	100	98.571	Poecilia_mexicana
ENSDARG00000026183	polr2eb	100	98.571	ENSPREG00000006489	polr2eb	100	98.571	Poecilia_reticulata
ENSDARG00000026183	polr2eb	100	87.204	ENSPPYG00000009305	POLR2E	100	87.204	Pongo_abelii
ENSDARG00000026183	polr2eb	53	93.694	ENSPCAG00000016605	POLR2E	100	93.694	Procavia_capensis
ENSDARG00000026183	polr2eb	100	94.762	ENSPCOG00000014491	POLR2E	100	94.762	Propithecus_coquereli
ENSDARG00000026183	polr2eb	65	100.000	ENSPVAG00000007718	-	55	93.966	Pteropus_vampyrus
ENSDARG00000026183	polr2eb	90	98.421	ENSPNYG00000019797	polr2eb	96	98.421	Pundamilia_nyererei
ENSDARG00000026183	polr2eb	100	98.095	ENSPNAG00000026263	POLR2E	100	98.095	Pygocentrus_nattereri
ENSDARG00000026183	polr2eb	100	94.762	ENSRNOG00000013545	Polr2e	100	94.762	Rattus_norvegicus
ENSDARG00000026183	polr2eb	100	94.762	ENSRBIG00000028726	-	100	94.762	Rhinopithecus_bieti
ENSDARG00000026183	polr2eb	100	70.142	ENSRBIG00000027259	-	100	70.142	Rhinopithecus_bieti
ENSDARG00000026183	polr2eb	100	94.762	ENSRROG00000043763	POLR2E	100	94.762	Rhinopithecus_roxellana
ENSDARG00000026183	polr2eb	99	44.495	YBR154C	RPB5	98	44.495	Saccharomyces_cerevisiae
ENSDARG00000026183	polr2eb	100	94.762	ENSSBOG00000027241	POLR2E	100	94.762	Saimiri_boliviensis_boliviensis
ENSDARG00000026183	polr2eb	100	95.238	ENSSHAG00000010690	POLR2E	100	95.238	Sarcophilus_harrisii
ENSDARG00000026183	polr2eb	100	99.048	ENSSFOG00015006073	polr2e	100	99.048	Scleropages_formosus
ENSDARG00000026183	polr2eb	100	99.048	ENSSMAG00000012782	polr2eb	100	99.048	Scophthalmus_maximus
ENSDARG00000026183	polr2eb	100	99.048	ENSSDUG00000003352	polr2eb	100	99.048	Seriola_dumerili
ENSDARG00000026183	polr2eb	100	99.048	ENSSLDG00000004965	polr2eb	100	99.048	Seriola_lalandi_dorsalis
ENSDARG00000026183	polr2eb	100	95.238	ENSSPUG00000006114	POLR2E	100	95.238	Sphenodon_punctatus
ENSDARG00000026183	polr2eb	100	99.048	ENSSPAG00000017556	polr2eb	100	99.048	Stegastes_partitus
ENSDARG00000026183	polr2eb	100	94.762	ENSSSCG00000021472	POLR2E	100	94.762	Sus_scrofa
ENSDARG00000026183	polr2eb	66	86.429	ENSTGUG00000000922	POLR2E	99	86.429	Taeniopygia_guttata
ENSDARG00000026183	polr2eb	96	94.527	ENSTRUG00000018238	polr2eb	100	86.190	Takifugu_rubripes
ENSDARG00000026183	polr2eb	100	99.048	ENSTNIG00000013187	polr2eb	100	99.048	Tetraodon_nigroviridis
ENSDARG00000026183	polr2eb	100	94.286	ENSTTRG00000001484	POLR2E	100	94.286	Tursiops_truncatus
ENSDARG00000026183	polr2eb	92	91.237	ENSUAMG00000009166	POLR2E	100	81.429	Ursus_americanus
ENSDARG00000026183	polr2eb	100	94.762	ENSVVUG00000022818	POLR2E	54	94.762	Vulpes_vulpes
ENSDARG00000026183	polr2eb	100	96.190	ENSXETG00000003291	polr2e	100	96.190	Xenopus_tropicalis
ENSDARG00000026183	polr2eb	100	85.714	ENSXCOG00000009197	polr2eb	100	85.714	Xiphophorus_couchianus
ENSDARG00000026183	polr2eb	100	98.571	ENSXMAG00000026495	polr2eb	100	98.571	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process