EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000026489 (Gene tree)
Gene ID
573145
Gene Symbol
khsrp
Alias
fc10e10|fc94c12|sb:eu1000|sb:eu1001|wu:fb25b12|wu:fc10e10|wu:fc94c12|zgc:163038
Full Name
KH-type splicing regulatory protein
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
12048 bases
Position
chr1:54960189-54972236
Accession
ZDB-GENE-030131-4357
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000032748KH_1PF00013.298.1e-6814
ENSDARP00000032748KH_1PF00013.298.1e-6824
ENSDARP00000032748KH_1PF00013.298.1e-6834
ENSDARP00000032748KH_1PF00013.298.1e-6844
ENSDARP00000125251KH_1PF00013.293.4e-2912
ENSDARP00000125251KH_1PF00013.293.4e-2922
ENSDARP00000120919KH_1PF00013.295.8e-1511
ENSDARP00000032748KH_2PF07650.175.9e-1911
ENSDARP00000125251KH_2PF07650.175.1e-1011
ENSDARP00000032748DUF1897PF09005.102.8e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000150548-693-ENSDARP00000125251216 (aa)-H0WEH3
ENSDART00000140016-524-ENSDARP00000120919136 (aa)-E9QIA6
ENSDART00000038330-3024XM_005160179ENSDARP00000032748666 (aa)XP_005160236F1QXP8
Gene Model
Click here to download ENSDARG00000026489's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000026489's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000026489khsrp5734.568ENSDARG00000024276pcbp45134.568
ENSDARG00000026489khsrp9351.724ENSDARG00000086896fubp39643.168
ENSDARG00000026489khsrp5738.235ENSDARG00000054378pcbp36238.235
ENSDARG00000026489khsrp5540.625ENSDARG00000099039pcbp26840.625
ENSDARG00000026489khsrp10055.310ENSDARG00000029248fubp16757.802
ENSDARG00000026489khsrp5036.207ENSDARG00000057141zgc:1100456431.169
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000026489khsrp9468.495ENSG00000088247KHSRP10082.759Homo_sapiens
ENSDARG00000026489khsrp10075.180ENSAPOG00000012989KHSRP9674.773Acanthochromis_polyacanthus
ENSDARG00000026489khsrp9974.815ENSAPOG00000009524khsrp9674.533Acanthochromis_polyacanthus
ENSDARG00000026489khsrp9563.566ENSAMEG00000006978KHSRP9462.206Ailuropoda_melanoleuca
ENSDARG00000026489khsrp9776.865ENSACIG00000009298khsrp9774.347Amphilophus_citrinellus
ENSDARG00000026489khsrp10074.892ENSAOCG00000010189KHSRP9674.471Amphiprion_ocellaris
ENSDARG00000026489khsrp9974.815ENSAOCG00000010049khsrp9872.686Amphiprion_ocellaris
ENSDARG00000026489khsrp9974.815ENSAPEG00000013411khsrp9872.686Amphiprion_percula
ENSDARG00000026489khsrp10074.892ENSAPEG00000008575KHSRP9674.471Amphiprion_percula
ENSDARG00000026489khsrp10069.343ENSATEG00000024744KHSRP9468.196Anabas_testudineus
ENSDARG00000026489khsrp9974.815ENSATEG00000019332khsrp9873.503Anabas_testudineus
ENSDARG00000026489khsrp9765.051ENSACAG00000015398KHSRP9163.333Anolis_carolinensis
ENSDARG00000026489khsrp10056.838ENSANAG00000004931-6558.940Aotus_nancymaae
ENSDARG00000026489khsrp9962.222ENSANAG00000027617KHSRP8462.809Aotus_nancymaae
ENSDARG00000026489khsrp9975.110ENSACLG00000020487khsrp9972.018Astatotilapia_calliptera
ENSDARG00000026489khsrp9768.098ENSACLG00000001424KHSRP9068.712Astatotilapia_calliptera
ENSDARG00000026489khsrp10083.876ENSAMXG00000036582khsrp10081.805Astyanax_mexicanus
ENSDARG00000026489khsrp10057.919ENSBTAG00000008926FUBP16558.940Bos_taurus
ENSDARG00000026489khsrp9466.717ENSBTAG00000021018KHSRP9066.471Bos_taurus
ENSDARG00000026489khsrp9467.771ENSCJAG00000016627KHSRP9066.765Callithrix_jacchus
ENSDARG00000026489khsrp8168.990ENSCAFG00000018667KHSRP9468.855Canis_familiaris
ENSDARG00000026489khsrp10056.838ENSCAFG00020015251-6656.540Canis_lupus_dingo
ENSDARG00000026489khsrp9466.616ENSCAFG00020019133KHSRP9468.855Canis_lupus_dingo
ENSDARG00000026489khsrp10058.796ENSCHIG00000013418-6559.161Capra_hircus
ENSDARG00000026489khsrp9466.717ENSCHIG00000027053KHSRP8966.471Capra_hircus
ENSDARG00000026489khsrp9266.564ENSTSYG00000011552KHSRP8866.216Carlito_syrichta
ENSDARG00000026489khsrp7868.450ENSCAPG00000005534KHSRP8469.737Cavia_aperea
ENSDARG00000026489khsrp9962.222ENSCPOG00000005140KHSRP8559.913Cavia_porcellus
ENSDARG00000026489khsrp9469.579ENSCCAG00000025297KHSRP9068.237Cebus_capucinus
ENSDARG00000026489khsrp9469.856ENSCATG00000036458KHSRP9267.205Cercocebus_atys
ENSDARG00000026489khsrp9962.222ENSCLAG00000007309KHSRP8666.210Chinchilla_lanigera
ENSDARG00000026489khsrp9962.222ENSCSAG00000009626KHSRP8667.647Chlorocebus_sabaeus
ENSDARG00000026489khsrp9958.519ENSCPBG00000016987-6756.962Chrysemys_picta_bellii
ENSDARG00000026489khsrp9763.676ENSCPBG00000005286KHSRP9263.781Chrysemys_picta_bellii
ENSDARG00000026489khsrp9269.157ENSCANG00000015665KHSRP9269.169Colobus_angolensis_palliatus
ENSDARG00000026489khsrp10056.838ENSCANG00000034534-6458.940Colobus_angolensis_palliatus
ENSDARG00000026489khsrp9467.620ENSCGRG00001011031Khsrp8966.471Cricetulus_griseus_chok1gshd
ENSDARG00000026489khsrp8868.709ENSCGRG00000015331Khsrp8867.794Cricetulus_griseus_crigri
ENSDARG00000026489khsrp10068.018ENSCSEG00000011429khsrp9962.689Cynoglossus_semilaevis
ENSDARG00000026489khsrp9968.841ENSCVAG00000001873khsrp9869.428Cyprinodon_variegatus
ENSDARG00000026489khsrp10057.143ENSDNOG00000013200-5858.454Dasypus_novemcinctus
ENSDARG00000026489khsrp9266.154ENSDNOG00000046507KHSRP8463.971Dasypus_novemcinctus
ENSDARG00000026489khsrp9261.049ENSDORG00000002447Khsrp6872.523Dipodomys_ordii
ENSDARG00000026489khsrp10059.155ENSETEG00000004793KHSRP9059.877Echinops_telfairi
ENSDARG00000026489khsrp10056.838ENSEASG00005016990-6559.161Equus_asinus_asinus
ENSDARG00000026489khsrp9962.222ENSEASG00005023114KHSRP8966.618Equus_asinus_asinus
ENSDARG00000026489khsrp9962.222ENSECAG00000018305KHSRP8966.618Equus_caballus
ENSDARG00000026489khsrp10056.838ENSECAG00000010867FUBP16559.161Equus_caballus
ENSDARG00000026489khsrp9980.292ENSELUG00000016310khsrp9877.895Esox_lucius
ENSDARG00000026489khsrp9871.111ENSELUG00000008445-9670.651Esox_lucius
ENSDARG00000026489khsrp9666.769ENSFCAG00000003731KHSRP8966.716Felis_catus
ENSDARG00000026489khsrp10056.838ENSFCAG00000010330-6558.940Felis_catus
ENSDARG00000026489khsrp7648.824ENSFDAG00000010889KHSRP7454.224Fukomys_damarensis
ENSDARG00000026489khsrp9965.926ENSFHEG00000009577khsrp6771.868Fundulus_heteroclitus
ENSDARG00000026489khsrp9974.815ENSGMOG00000002166khsrp9070.399Gadus_morhua
ENSDARG00000026489khsrp9970.370ENSGAFG00000010469khsrp9869.618Gambusia_affinis
ENSDARG00000026489khsrp9669.970ENSGACG00000012422KHSRP9668.000Gasterosteus_aculeatus
ENSDARG00000026489khsrp10070.870ENSGACG00000018990khsrp6274.505Gasterosteus_aculeatus
ENSDARG00000026489khsrp9958.519ENSGAGG00000019219-6656.962Gopherus_agassizii
ENSDARG00000026489khsrp9168.900ENSGAGG00000023246KHSRP9563.768Gopherus_agassizii
ENSDARG00000026489khsrp9167.685ENSGGOG00000007028KHSRP9766.216Gorilla_gorilla
ENSDARG00000026489khsrp10056.838ENSGGOG00000027554FUBP16558.940Gorilla_gorilla
ENSDARG00000026489khsrp9974.963ENSHBUG00000018543khsrp9971.870Haplochromis_burtoni
ENSDARG00000026489khsrp9671.557ENSHBUG00000014760KHSRP9570.808Haplochromis_burtoni
ENSDARG00000026489khsrp9962.222ENSHGLG00000013239KHSRP9066.814Heterocephalus_glaber_female
ENSDARG00000026489khsrp10068.950ENSHCOG00000020488khsrp9867.226Hippocampus_comes
ENSDARG00000026489khsrp9883.259ENSIPUG00000008034khsrp10080.029Ictalurus_punctatus
ENSDARG00000026489khsrp9266.102ENSSTOG00000002371KHSRP9466.817Ictidomys_tridecemlineatus
ENSDARG00000026489khsrp9170.048ENSJJAG00000006370Khsrp8566.324Jaculus_jaculus
ENSDARG00000026489khsrp9969.630ENSKMAG00000018579khsrp9869.803Kryptolebias_marmoratus
ENSDARG00000026489khsrp8171.892ENSLBEG00000005191khsrp6278.108Labrus_bergylta
ENSDARG00000026489khsrp9558.140ENSLACG00000012547-6856.061Latimeria_chalumnae
ENSDARG00000026489khsrp9965.185ENSLACG00000002072KHSRP9160.570Latimeria_chalumnae
ENSDARG00000026489khsrp9571.318ENSLOCG00000006229khsrp9572.866Lepisosteus_oculatus
ENSDARG00000026489khsrp9268.379ENSLAFG00000002426KHSRP10067.290Loxodonta_africana
ENSDARG00000026489khsrp8966.983ENSMFAG00000000292KHSRP9666.216Macaca_fascicularis
ENSDARG00000026489khsrp9465.581ENSMMUG00000005597KHSRP8765.758Macaca_mulatta
ENSDARG00000026489khsrp9470.047ENSMNEG00000036982KHSRP9068.389Macaca_nemestrina
ENSDARG00000026489khsrp9266.564ENSMLEG00000030501KHSRP9966.216Mandrillus_leucophaeus
ENSDARG00000026489khsrp10057.778ENSMLEG00000032973-6757.045Mandrillus_leucophaeus
ENSDARG00000026489khsrp10072.000ENSMAMG00000023639KHSRP9769.163Mastacembelus_armatus
ENSDARG00000026489khsrp9774.924ENSMAMG00000011746khsrp9571.736Mastacembelus_armatus
ENSDARG00000026489khsrp9671.407ENSMZEG00005011227KHSRP9570.659Maylandia_zebra
ENSDARG00000026489khsrp7295.833ENSMZEG00005022974-77100.000Maylandia_zebra
ENSDARG00000026489khsrp9267.453ENSMAUG00000018966Khsrp9066.616Mesocricetus_auratus
ENSDARG00000026489khsrp9962.222ENSMICG00000007863KHSRP9166.214Microcebus_murinus
ENSDARG00000026489khsrp10058.222ENSMICG00000014463-6459.161Microcebus_murinus
ENSDARG00000026489khsrp9367.344ENSMOCG00000018305Khsrp8767.580Microtus_ochrogaster
ENSDARG00000026489khsrp10074.194ENSMMOG00000021381-9278.061Mola_mola
ENSDARG00000026489khsrp9657.424ENSMMOG00000005097-9653.023Mola_mola
ENSDARG00000026489khsrp9263.553ENSMODG00000001952KHSRP9561.437Monodelphis_domestica
ENSDARG00000026489khsrp10067.811ENSMALG00000006104khsrp9764.769Monopterus_albus
ENSDARG00000026489khsrp10067.335ENSMALG00000004958KHSRP9068.030Monopterus_albus
ENSDARG00000026489khsrp9161.502MGP_CAROLIEiJ_G0021800Khsrp8557.394Mus_caroli
ENSDARG00000026489khsrp9467.771ENSMUSG00000007670Khsrp8966.618Mus_musculus
ENSDARG00000026489khsrp9962.222MGP_PahariEiJ_G0020789Khsrp8567.500Mus_pahari
ENSDARG00000026489khsrp9962.222MGP_SPRETEiJ_G0022711Khsrp8567.500Mus_spretus
ENSDARG00000026489khsrp10056.410ENSMPUG00000010799-5657.971Mustela_putorius_furo
ENSDARG00000026489khsrp9365.749ENSMPUG00000006615KHSRP9165.872Mustela_putorius_furo
ENSDARG00000026489khsrp9464.062ENSMLUG00000015543KHSRP9466.066Myotis_lucifugus
ENSDARG00000026489khsrp9961.481ENSNGAG00000023093Khsrp8665.160Nannospalax_galili
ENSDARG00000026489khsrp9669.820ENSNBRG00000005876KHSRP9469.670Neolamprologus_brichardi
ENSDARG00000026489khsrp10076.959ENSNBRG00000023797khsrp9872.131Neolamprologus_brichardi
ENSDARG00000026489khsrp10063.877ENSNLEG00000015923KHSRP9364.095Nomascus_leucogenys
ENSDARG00000026489khsrp8467.692ENSMEUG00000016601KHSRP8368.077Notamacropus_eugenii
ENSDARG00000026489khsrp9463.404ENSOPRG00000010594-8863.529Ochotona_princeps
ENSDARG00000026489khsrp9455.167ENSODEG00000015021KHSRP9153.582Octodon_degus
ENSDARG00000026489khsrp9969.231ENSONIG00000002163KHSRP9570.877Oreochromis_niloticus
ENSDARG00000026489khsrp9776.220ENSONIG00000017713khsrp10073.049Oreochromis_niloticus
ENSDARG00000026489khsrp9162.821ENSOANG00000000261KHSRP9260.835Ornithorhynchus_anatinus
ENSDARG00000026489khsrp9856.897ENSOCUG00000002225-5953.140Oryctolagus_cuniculus
ENSDARG00000026489khsrp9565.116ENSOCUG00000026747-9572.807Oryctolagus_cuniculus
ENSDARG00000026489khsrp9766.063ENSORLG00000011882khsrp6670.742Oryzias_latipes
ENSDARG00000026489khsrp10062.771ENSORLG00020005284khsrp9567.223Oryzias_latipes_hni
ENSDARG00000026489khsrp9771.494ENSORLG00015003791khsrp9769.618Oryzias_latipes_hsok
ENSDARG00000026489khsrp10069.424ENSOMEG00000013233khsrp9769.207Oryzias_melastigma
ENSDARG00000026489khsrp9962.222ENSOGAG00000008073KHSRP9067.059Otolemur_garnettii
ENSDARG00000026489khsrp9562.791ENSOARG00000005881KHSRP9772.179Ovis_aries
ENSDARG00000026489khsrp9464.062ENSPPAG00000036398-7173.451Pan_paniscus
ENSDARG00000026489khsrp8967.710ENSPPAG00000036395-9167.555Pan_paniscus
ENSDARG00000026489khsrp10056.838ENSPPAG00000038243-6558.278Pan_paniscus
ENSDARG00000026489khsrp9963.235ENSPPRG00000008001KHSRP5766.892Panthera_pardus
ENSDARG00000026489khsrp10056.838ENSPTRG00000000888FUBP16558.940Pan_troglodytes
ENSDARG00000026489khsrp9170.854ENSPTRG00000010364KHSRP8965.147Pan_troglodytes
ENSDARG00000026489khsrp10056.410ENSPANG00000004797-6558.720Papio_anubis
ENSDARG00000026489khsrp9171.357ENSPANG00000000103KHSRP9066.765Papio_anubis
ENSDARG00000026489khsrp10076.890ENSPKIG00000003200khsrp9374.273Paramormyrops_kingsleyae
ENSDARG00000026489khsrp10073.050ENSPKIG00000005077KHSRP10074.236Paramormyrops_kingsleyae
ENSDARG00000026489khsrp10053.241ENSPKIG00000009065-8554.846Paramormyrops_kingsleyae
ENSDARG00000026489khsrp9562.016ENSPSIG00000008244KHSRP6572.606Pelodiscus_sinensis
ENSDARG00000026489khsrp9968.613ENSPMGG00000016443khsrp9764.177Periophthalmus_magnuspinnatus
ENSDARG00000026489khsrp9268.371ENSPEMG00000022853Khsrp9067.652Peromyscus_maniculatus_bairdii
ENSDARG00000026489khsrp9467.169ENSPCIG00000025516KHSRP9064.441Phascolarctos_cinereus
ENSDARG00000026489khsrp10057.143ENSPCIG00000022984-6558.940Phascolarctos_cinereus
ENSDARG00000026489khsrp9970.370ENSPFOG00000004577khsrp9868.589Poecilia_formosa
ENSDARG00000026489khsrp9970.370ENSPLAG00000010763khsrp9868.589Poecilia_latipinna
ENSDARG00000026489khsrp9970.370ENSPMEG00000014049khsrp9868.589Poecilia_mexicana
ENSDARG00000026489khsrp9970.370ENSPREG00000000419khsrp9869.347Poecilia_reticulata
ENSDARG00000026489khsrp9558.779ENSPPYG00000019172-9555.641Pongo_abelii
ENSDARG00000026489khsrp9167.255ENSPPYG00000009454KHSRP9267.457Pongo_abelii
ENSDARG00000026489khsrp7575.819ENSPCAG00000000246KHSRP8763.724Procavia_capensis
ENSDARG00000026489khsrp8967.141ENSPCOG00000027506KHSRP9666.366Propithecus_coquereli
ENSDARG00000026489khsrp9465.060ENSPVAG00000007251KHSRP8964.118Pteropus_vampyrus
ENSDARG00000026489khsrp9973.512ENSPNYG00000001374khsrp9971.875Pundamilia_nyererei
ENSDARG00000026489khsrp9667.830ENSPNYG00000014008KHSRP9066.768Pundamilia_nyererei
ENSDARG00000026489khsrp9984.672ENSPNAG00000012026khsrp10081.684Pygocentrus_nattereri
ENSDARG00000026489khsrp9467.771ENSRNOG00000047628Khsrp8966.618Rattus_norvegicus
ENSDARG00000026489khsrp8961.661ENSRBIG00000041605KHSRP9960.122Rhinopithecus_bieti
ENSDARG00000026489khsrp9467.771ENSRROG00000031782KHSRP9066.765Rhinopithecus_roxellana
ENSDARG00000026489khsrp9168.116ENSSBOG00000034871KHSRP9966.216Saimiri_boliviensis_boliviensis
ENSDARG00000026489khsrp8867.311ENSSHAG00000011383KHSRP9365.015Sarcophilus_harrisii
ENSDARG00000026489khsrp10070.742ENSSFOG00015018719khsrp9971.091Scleropages_formosus
ENSDARG00000026489khsrp10071.311ENSSFOG00015010767KHSRP9675.836Scleropages_formosus
ENSDARG00000026489khsrp10068.584ENSSMAG00000012166KHSRP6572.149Scophthalmus_maximus
ENSDARG00000026489khsrp9974.074ENSSMAG00000004167khsrp8371.461Scophthalmus_maximus
ENSDARG00000026489khsrp9776.982ENSSDUG00000002390khsrp9776.840Seriola_dumerili
ENSDARG00000026489khsrp10075.036ENSSDUG00000002110KHSRP9673.867Seriola_dumerili
ENSDARG00000026489khsrp9773.668ENSSLDG00000012993khsrp9773.272Seriola_lalandi_dorsalis
ENSDARG00000026489khsrp10074.892ENSSLDG00000025625KHSRP9673.867Seriola_lalandi_dorsalis
ENSDARG00000026489khsrp9563.964ENSSPUG00000016462KHSRP6172.135Sphenodon_punctatus
ENSDARG00000026489khsrp9974.815ENSSPAG00000008349khsrp9873.748Stegastes_partitus
ENSDARG00000026489khsrp10071.739ENSSPAG00000008244KHSRP8669.474Stegastes_partitus
ENSDARG00000026489khsrp10056.410ENSSSCG00000003771-5768.462Sus_scrofa
ENSDARG00000026489khsrp9962.222ENSSSCG00000013538KHSRP9469.748Sus_scrofa
ENSDARG00000026489khsrp9967.407ENSTNIG00000014067khsrp6771.429Tetraodon_nigroviridis
ENSDARG00000026489khsrp9171.000ENSTTRG00000010390KHSRP8465.177Tursiops_truncatus
ENSDARG00000026489khsrp10058.333ENSUAMG00000004961-8738.994Ursus_americanus
ENSDARG00000026489khsrp8266.724ENSUAMG00000023100KHSRP8567.672Ursus_americanus
ENSDARG00000026489khsrp10056.838ENSUMAG00000006022-6359.161Ursus_maritimus
ENSDARG00000026489khsrp9260.836ENSUMAG00000011144KHSRP8861.862Ursus_maritimus
ENSDARG00000026489khsrp9458.594ENSVPAG00000010837-10063.402Vicugna_pacos
ENSDARG00000026489khsrp9265.156ENSVVUG00000026737KHSRP9468.855Vulpes_vulpes
ENSDARG00000026489khsrp10056.838ENSVVUG00000030003-6159.161Vulpes_vulpes
ENSDARG00000026489khsrp9258.060ENSXETG00000021862khsrp9857.544Xenopus_tropicalis
ENSDARG00000026489khsrp10056.828ENSXETG00000013137fubp15958.537Xenopus_tropicalis
ENSDARG00000026489khsrp9972.321ENSXCOG00000014443khsrp9470.570Xiphophorus_couchianus
ENSDARG00000026489khsrp9970.944ENSXMAG00000012876khsrp9869.711Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0006355regulation of transcription, DNA-templated-IEAProcess

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