EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000026801 (Gene tree)
Gene ID: 393899
Gene Symbol: stau2
Alias: zgc:55287
Full Name: staufen double-stranded RNA binding protein 2
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 222472 bases
Position: chr24:13017586-13240057
Accession: ZDB-GENE-040426-687
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116175	dsrm	PF00035.26	2.2e-50	1	4
ENSDARP00000116175	dsrm	PF00035.26	2.2e-50	2	4
ENSDARP00000116175	dsrm	PF00035.26	2.2e-50	3	4
ENSDARP00000116175	dsrm	PF00035.26	2.2e-50	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000139246	-	1448	-	-	- (aa)	-	-
ENSDART00000142457	-	3252	XM_009297328	ENSDARP00000116175	678 (aa)	XP_009295603	F1QJT6

Gene Model

Click here to download ENSDARG00000026801's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000026801's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000026801	stau2	96	44.666	ENSDARG00000044182	stau1	99	47.396

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000026801	stau2	89	69.079	ENSG00000040341	STAU2	100	75.930	Homo_sapiens
ENSDARG00000026801	stau2	95	79.394	ENSAPOG00000002892	stau2	99	79.909	Acanthochromis_polyacanthus
ENSDARG00000026801	stau2	89	69.079	ENSAMEG00000001864	STAU2	98	75.499	Ailuropoda_melanoleuca
ENSDARG00000026801	stau2	89	79.680	ENSACIG00000000839	stau2	100	80.192	Amphilophus_citrinellus
ENSDARG00000026801	stau2	95	79.242	ENSAOCG00000013358	stau2	99	79.758	Amphiprion_ocellaris
ENSDARG00000026801	stau2	95	79.242	ENSAPEG00000022162	stau2	99	79.758	Amphiprion_percula
ENSDARG00000026801	stau2	95	77.979	ENSATEG00000013484	stau2	99	78.582	Anabas_testudineus
ENSDARG00000026801	stau2	91	73.585	ENSAPLG00000005175	STAU2	100	73.585	Anas_platyrhynchos
ENSDARG00000026801	stau2	85	69.019	ENSACAG00000012977	STAU2	100	69.019	Anolis_carolinensis
ENSDARG00000026801	stau2	89	73.355	ENSANAG00000023588	STAU2	99	74.630	Aotus_nancymaae
ENSDARG00000026801	stau2	95	80.182	ENSACLG00000024336	stau2	99	80.241	Astatotilapia_calliptera
ENSDARG00000026801	stau2	100	84.875	ENSAMXG00000000460	stau2	100	84.875	Astyanax_mexicanus
ENSDARG00000026801	stau2	89	72.697	ENSBTAG00000002076	STAU2	100	72.862	Bos_taurus
ENSDARG00000026801	stau2	89	68.586	ENSCJAG00000007632	STAU2	100	72.421	Callithrix_jacchus
ENSDARG00000026801	stau2	64	79.133	ENSCJAG00000009484	-	94	79.133	Callithrix_jacchus
ENSDARG00000026801	stau2	90	73.159	ENSCAFG00000008077	STAU2	98	73.159	Canis_familiaris
ENSDARG00000026801	stau2	89	73.355	ENSCAFG00020017809	STAU2	100	73.355	Canis_lupus_dingo
ENSDARG00000026801	stau2	90	72.831	ENSCHIG00000012254	STAU2	100	73.191	Capra_hircus
ENSDARG00000026801	stau2	75	64.833	ENSTSYG00000034361	-	90	75.926	Carlito_syrichta
ENSDARG00000026801	stau2	75	62.157	ENSCAPG00000017061	-	98	62.157	Cavia_aperea
ENSDARG00000026801	stau2	89	68.914	ENSCPOG00000015001	-	100	75.538	Cavia_porcellus
ENSDARG00000026801	stau2	89	68.257	ENSCCAG00000035053	-	100	72.222	Cebus_capucinus
ENSDARG00000026801	stau2	75	56.360	ENSCATG00000031335	-	99	54.930	Cercocebus_atys
ENSDARG00000026801	stau2	89	73.684	ENSCATG00000044825	STAU2	100	75.930	Cercocebus_atys
ENSDARG00000026801	stau2	89	69.458	ENSCLAG00000001824	STAU2	97	80.292	Chinchilla_lanigera
ENSDARG00000026801	stau2	81	75.730	ENSCSAG00000013572	-	100	75.730	Chlorocebus_sabaeus
ENSDARG00000026801	stau2	75	59.020	ENSCHOG00000010590	STAU2	89	59.020	Choloepus_hoffmanni
ENSDARG00000026801	stau2	100	74.706	ENSCPBG00000006987	STAU2	99	76.074	Chrysemys_picta_bellii
ENSDARG00000026801	stau2	75	55.186	ENSCANG00000031540	-	99	53.918	Colobus_angolensis_palliatus
ENSDARG00000026801	stau2	89	67.763	ENSCGRG00001006522	Stau2	100	67.928	Cricetulus_griseus_chok1gshd
ENSDARG00000026801	stau2	95	73.636	ENSCSEG00000010050	stau2	98	74.130	Cynoglossus_semilaevis
ENSDARG00000026801	stau2	95	77.661	ENSCVAG00000009893	stau2	99	77.811	Cyprinodon_variegatus
ENSDARG00000026801	stau2	89	69.079	ENSDNOG00000039875	STAU2	100	69.079	Dasypus_novemcinctus
ENSDARG00000026801	stau2	84	68.301	ENSDORG00000014308	Stau2	100	75.734	Dipodomys_ordii
ENSDARG00000026801	stau2	92	63.158	ENSETEG00000009087	STAU2	100	63.158	Echinops_telfairi
ENSDARG00000026801	stau2	64	36.937	ENSEBUG00000006591	STAU2	99	36.937	Eptatretus_burgeri
ENSDARG00000026801	stau2	90	73.159	ENSEASG00005020174	STAU2	100	73.355	Equus_asinus_asinus
ENSDARG00000026801	stau2	89	73.520	ENSECAG00000000260	STAU2	100	73.520	Equus_caballus
ENSDARG00000026801	stau2	89	67.763	ENSEEUG00000015102	STAU2	100	67.763	Erinaceus_europaeus
ENSDARG00000026801	stau2	81	77.939	ENSELUG00000006988	stau2	94	77.939	Esox_lucius
ENSDARG00000026801	stau2	90	73.486	ENSFCAG00000004917	STAU2	100	73.684	Felis_catus
ENSDARG00000026801	stau2	100	74.265	ENSFALG00000008552	STAU2	100	74.265	Ficedula_albicollis
ENSDARG00000026801	stau2	84	70.414	ENSFDAG00000005157	STAU2	100	75.538	Fukomys_damarensis
ENSDARG00000026801	stau2	50	81.818	ENSFHEG00000018386	stau2	85	81.818	Fundulus_heteroclitus
ENSDARG00000026801	stau2	74	84.878	ENSGMOG00000005428	stau2	83	84.878	Gadus_morhua
ENSDARG00000026801	stau2	100	69.853	ENSGALG00000031390	STAU2	100	78.947	Gallus_gallus
ENSDARG00000026801	stau2	99	74.212	ENSGAFG00000008442	stau2	99	77.644	Gambusia_affinis
ENSDARG00000026801	stau2	89	78.526	ENSGACG00000002757	stau2	100	78.526	Gasterosteus_aculeatus
ENSDARG00000026801	stau2	100	74.780	ENSGAGG00000003794	STAU2	100	74.780	Gopherus_agassizii
ENSDARG00000026801	stau2	89	68.914	ENSGGOG00000026508	STAU2	100	75.930	Gorilla_gorilla
ENSDARG00000026801	stau2	95	80.030	ENSHBUG00000020209	stau2	99	80.090	Haplochromis_burtoni
ENSDARG00000026801	stau2	89	68.586	ENSHGLG00000014888	STAU2	100	68.586	Heterocephalus_glaber_female
ENSDARG00000026801	stau2	89	68.586	ENSHGLG00100005337	STAU2	100	68.586	Heterocephalus_glaber_male
ENSDARG00000026801	stau2	94	78.215	ENSHCOG00000004724	stau2	98	78.215	Hippocampus_comes
ENSDARG00000026801	stau2	90	80.000	ENSIPUG00000009105	stau2	100	75.181	Ictalurus_punctatus
ENSDARG00000026801	stau2	89	72.862	ENSSTOG00000011076	STAU2	100	72.862	Ictidomys_tridecemlineatus
ENSDARG00000026801	stau2	84	71.627	ENSJJAG00000020228	Stau2	100	75.342	Jaculus_jaculus
ENSDARG00000026801	stau2	95	78.281	ENSKMAG00000006853	stau2	99	78.733	Kryptolebias_marmoratus
ENSDARG00000026801	stau2	95	77.928	ENSLBEG00000014492	stau2	99	78.228	Labrus_bergylta
ENSDARG00000026801	stau2	100	76.845	ENSLACG00000006873	STAU2	100	76.845	Latimeria_chalumnae
ENSDARG00000026801	stau2	91	69.936	ENSLOCG00000003717	stau2	100	69.936	Lepisosteus_oculatus
ENSDARG00000026801	stau2	89	69.079	ENSLAFG00000013327	STAU2	100	69.079	Loxodonta_africana
ENSDARG00000026801	stau2	75	61.765	ENSMFAG00000037793	-	99	61.129	Macaca_fascicularis
ENSDARG00000026801	stau2	89	73.684	ENSMFAG00000044834	STAU2	100	75.930	Macaca_fascicularis
ENSDARG00000026801	stau2	92	72.456	ENSMMUG00000021588	-	99	74.684	Macaca_mulatta
ENSDARG00000026801	stau2	69	61.734	ENSMMUG00000048014	-	97	61.734	Macaca_mulatta
ENSDARG00000026801	stau2	84	67.601	ENSMNEG00000035325	STAU2	100	75.930	Macaca_nemestrina
ENSDARG00000026801	stau2	89	69.079	ENSMLEG00000044427	STAU2	99	74.684	Mandrillus_leucophaeus
ENSDARG00000026801	stau2	72	62.118	ENSMLEG00000034013	-	98	62.169	Mandrillus_leucophaeus
ENSDARG00000026801	stau2	95	79.363	ENSMAMG00000023036	stau2	100	78.650	Mastacembelus_armatus
ENSDARG00000026801	stau2	95	80.182	ENSMZEG00005021462	stau2	99	80.241	Maylandia_zebra
ENSDARG00000026801	stau2	91	73.144	ENSMGAG00000011523	STAU2	100	73.144	Meleagris_gallopavo
ENSDARG00000026801	stau2	89	59.375	ENSMAUG00000021644	Stau2	98	62.476	Mesocricetus_auratus
ENSDARG00000026801	stau2	62	77.327	ENSMICG00000032397	-	97	77.719	Microcebus_murinus
ENSDARG00000026801	stau2	89	68.863	ENSMICG00000002886	-	100	72.763	Microcebus_murinus
ENSDARG00000026801	stau2	89	66.392	ENSMOCG00000001037	Stau2	100	74.227	Microtus_ochrogaster
ENSDARG00000026801	stau2	89	74.478	ENSMMOG00000003579	stau2	100	74.478	Mola_mola
ENSDARG00000026801	stau2	85	73.232	ENSMALG00000001524	stau2	94	73.356	Monopterus_albus
ENSDARG00000026801	stau2	89	67.928	MGP_CAROLIEiJ_G0013967	Stau2	100	75.147	Mus_caroli
ENSDARG00000026801	stau2	89	67.763	ENSMUSG00000025920	Stau2	100	75.147	Mus_musculus
ENSDARG00000026801	stau2	89	68.092	MGP_PahariEiJ_G0023852	Stau2	100	75.538	Mus_pahari
ENSDARG00000026801	stau2	89	67.763	MGP_SPRETEiJ_G0014772	Stau2	100	75.147	Mus_spretus
ENSDARG00000026801	stau2	89	73.684	ENSMPUG00000010221	STAU2	100	73.684	Mustela_putorius_furo
ENSDARG00000026801	stau2	75	75.686	ENSMLUG00000000592	STAU2	100	75.686	Myotis_lucifugus
ENSDARG00000026801	stau2	89	68.421	ENSNGAG00000017873	Stau2	100	75.538	Nannospalax_galili
ENSDARG00000026801	stau2	95	80.030	ENSNBRG00000023829	stau2	99	80.090	Neolamprologus_brichardi
ENSDARG00000026801	stau2	89	68.750	ENSNLEG00000001342	STAU2	100	72.619	Nomascus_leucogenys
ENSDARG00000026801	stau2	71	64.140	ENSNLEG00000036286	-	99	67.010	Nomascus_leucogenys
ENSDARG00000026801	stau2	57	55.297	ENSMEUG00000011345	-	68	55.297	Notamacropus_eugenii
ENSDARG00000026801	stau2	89	61.614	ENSOPRG00000008474	STAU2	100	61.614	Ochotona_princeps
ENSDARG00000026801	stau2	89	69.079	ENSODEG00000003610	STAU2	100	75.930	Octodon_degus
ENSDARG00000026801	stau2	92	78.067	ENSONIG00000014300	stau2	100	78.135	Oreochromis_niloticus
ENSDARG00000026801	stau2	89	73.684	ENSOCUG00000013843	STAU2	100	73.684	Oryctolagus_cuniculus
ENSDARG00000026801	stau2	94	78.506	ENSORLG00000007943	stau2	94	78.691	Oryzias_latipes
ENSDARG00000026801	stau2	95	78.082	ENSORLG00020016648	stau2	98	78.387	Oryzias_latipes_hni
ENSDARG00000026801	stau2	95	78.234	ENSORLG00015016882	stau2	98	78.539	Oryzias_latipes_hsok
ENSDARG00000026801	stau2	95	78.939	ENSOMEG00000010542	stau2	99	78.939	Oryzias_melastigma
ENSDARG00000026801	stau2	69	73.727	ENSOGAG00000001112	STAU2	100	73.727	Otolemur_garnettii
ENSDARG00000026801	stau2	90	72.831	ENSOARG00000006011	STAU2	97	72.995	Ovis_aries
ENSDARG00000026801	stau2	89	73.684	ENSPPAG00000034287	STAU2	100	75.930	Pan_paniscus
ENSDARG00000026801	stau2	56	53.947	ENSPPAG00000041507	-	100	54.211	Pan_paniscus
ENSDARG00000026801	stau2	89	69.079	ENSPPRG00000024814	STAU2	100	73.016	Panthera_pardus
ENSDARG00000026801	stau2	89	73.684	ENSPTIG00000007856	STAU2	100	75.930	Panthera_tigris_altaica
ENSDARG00000026801	stau2	71	48.542	ENSPTRG00000045302	-	99	48.542	Pan_troglodytes
ENSDARG00000026801	stau2	89	68.914	ENSPTRG00000047797	STAU2	100	75.734	Pan_troglodytes
ENSDARG00000026801	stau2	92	72.632	ENSPANG00000021222	STAU2	100	73.684	Papio_anubis
ENSDARG00000026801	stau2	84	69.069	ENSPKIG00000006663	stau2	97	69.069	Paramormyrops_kingsleyae
ENSDARG00000026801	stau2	86	76.672	ENSPSIG00000003686	STAU2	100	76.672	Pelodiscus_sinensis
ENSDARG00000026801	stau2	83	75.731	ENSPMGG00000009011	stau2	93	75.731	Periophthalmus_magnuspinnatus
ENSDARG00000026801	stau2	89	67.763	ENSPEMG00000012104	Stau2	100	74.951	Peromyscus_maniculatus_bairdii
ENSDARG00000026801	stau2	88	58.182	ENSPMAG00000003826	stau2	97	58.182	Petromyzon_marinus
ENSDARG00000026801	stau2	95	67.337	ENSPCIG00000012872	STAU2	100	65.778	Phascolarctos_cinereus
ENSDARG00000026801	stau2	94	77.594	ENSPFOG00000013147	stau2	99	77.594	Poecilia_formosa
ENSDARG00000026801	stau2	53	73.184	ENSPLAG00000009029	stau2	90	74.148	Poecilia_latipinna
ENSDARG00000026801	stau2	95	77.477	ENSPMEG00000014168	stau2	99	77.594	Poecilia_mexicana
ENSDARG00000026801	stau2	99	75.540	ENSPREG00000017795	stau2	99	78.163	Poecilia_reticulata
ENSDARG00000026801	stau2	89	68.966	ENSPPYG00000018674	STAU2	100	68.966	Pongo_abelii
ENSDARG00000026801	stau2	75	67.059	ENSPCAG00000004679	STAU2	100	67.059	Procavia_capensis
ENSDARG00000026801	stau2	89	64.570	ENSPCOG00000011840	STAU2	100	64.570	Propithecus_coquereli
ENSDARG00000026801	stau2	89	59.704	ENSPVAG00000014575	STAU2	100	59.868	Pteropus_vampyrus
ENSDARG00000026801	stau2	95	80.182	ENSPNYG00000001132	stau2	99	80.241	Pundamilia_nyererei
ENSDARG00000026801	stau2	100	86.471	ENSPNAG00000023606	stau2	100	87.078	Pygocentrus_nattereri
ENSDARG00000026801	stau2	75	64.971	ENSRNOG00000042458	AABR07046707.1	99	70.625	Rattus_norvegicus
ENSDARG00000026801	stau2	89	73.684	ENSRBIG00000034859	-	100	73.684	Rhinopithecus_bieti
ENSDARG00000026801	stau2	56	51.451	ENSRROG00000029227	-	100	51.451	Rhinopithecus_roxellana
ENSDARG00000026801	stau2	52	80.966	ENSRROG00000039882	-	92	80.966	Rhinopithecus_roxellana
ENSDARG00000026801	stau2	89	73.191	ENSSBOG00000032091	STAU2	100	75.538	Saimiri_boliviensis_boliviensis
ENSDARG00000026801	stau2	89	75.164	ENSSFOG00015012905	stau2	100	75.164	Scleropages_formosus
ENSDARG00000026801	stau2	95	79.274	ENSSMAG00000016487	stau2	100	79.030	Scophthalmus_maximus
ENSDARG00000026801	stau2	95	80.152	ENSSDUG00000012535	stau2	99	80.455	Seriola_dumerili
ENSDARG00000026801	stau2	95	80.152	ENSSLDG00000007156	stau2	99	80.455	Seriola_lalandi_dorsalis
ENSDARG00000026801	stau2	55	63.660	ENSSARG00000009750	-	70	63.130	Sorex_araneus
ENSDARG00000026801	stau2	100	73.042	ENSSPUG00000018208	STAU2	100	75.862	Sphenodon_punctatus
ENSDARG00000026801	stau2	95	79.697	ENSSPAG00000000291	stau2	99	80.211	Stegastes_partitus
ENSDARG00000026801	stau2	90	73.322	ENSSSCG00000006179	-	100	75.734	Sus_scrofa
ENSDARG00000026801	stau2	89	73.520	ENSTGUG00000011535	STAU2	100	73.520	Taeniopygia_guttata
ENSDARG00000026801	stau2	84	78.098	ENSTRUG00000001905	stau2	100	78.098	Takifugu_rubripes
ENSDARG00000026801	stau2	75	69.231	ENSTNIG00000008181	stau2	98	69.580	Tetraodon_nigroviridis
ENSDARG00000026801	stau2	89	68.750	ENSTBEG00000016245	STAU2	100	68.750	Tupaia_belangeri
ENSDARG00000026801	stau2	89	61.020	ENSTTRG00000009236	STAU2	100	61.184	Tursiops_truncatus
ENSDARG00000026801	stau2	90	73.486	ENSUMAG00000018908	STAU2	99	74.113	Ursus_maritimus
ENSDARG00000026801	stau2	89	67.763	ENSVPAG00000001523	STAU2	100	67.763	Vicugna_pacos
ENSDARG00000026801	stau2	89	73.355	ENSVVUG00000019217	-	99	74.841	Vulpes_vulpes
ENSDARG00000026801	stau2	100	63.885	ENSXETG00000011826	stau2	100	67.857	Xenopus_tropicalis
ENSDARG00000026801	stau2	50	88.889	ENSXCOG00000007032	stau2	82	88.889	Xiphophorus_couchianus
ENSDARG00000026801	stau2	94	78.215	ENSXMAG00000010426	stau2	99	80.388	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005874	microtubule	-	IEA	Component
GO:0007281	germ cell development	16513105.	IMP	Process
GO:0008354	germ cell migration	16513105.	IMP	Process