EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000027109 (Gene tree)
Gene ID: 321659
Gene Symbol: zfr
Alias: wu:fb25b08
Full Name: zinc finger RNA binding protein
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 18671 bases
Position: chr5:41124098-41142768
Accession: ZDB-GENE-030131-378
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000109307	DZF	PF07528.14	3.2e-69	1	1
ENSDARP00000069275	DZF	PF07528.14	3.4e-69	1	1
ENSDARP00000109307	zf-met	PF12874.7	4.1e-21	1	3
ENSDARP00000109307	zf-met	PF12874.7	4.1e-21	2	3
ENSDARP00000109307	zf-met	PF12874.7	4.1e-21	3	3
ENSDARP00000069275	zf-met	PF12874.7	4.3e-21	1	3
ENSDARP00000069275	zf-met	PF12874.7	4.3e-21	2	3
ENSDARP00000069275	zf-met	PF12874.7	4.3e-21	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000136451	-	448	-	-	- (aa)	-	-
ENSDART00000130579	-	1738	-	-	- (aa)	-	-
ENSDART00000134891	-	824	-	-	- (aa)	-	-
ENSDART00000074789	-	4669	-	ENSDARP00000069275	1074 (aa)	-	A2BGG2
ENSDART00000129415	-	5222	-	ENSDARP00000109307	1052 (aa)	-	E7EZB4

Gene Model

Click here to download ENSDARG00000027109's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000027109's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000027109	zfr	96	51.036	ENSDARG00000071683	zfr2	84	63.340

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000027109	zfr	100	78.487	ENSG00000056097	ZFR	100	77.624	Homo_sapiens
ENSDARG00000027109	zfr	100	77.716	ENSAPOG00000009740	zfr	100	77.114	Acanthochromis_polyacanthus
ENSDARG00000027109	zfr	100	78.650	ENSAMEG00000006184	ZFR	100	77.696	Ailuropoda_melanoleuca
ENSDARG00000027109	zfr	94	88.360	ENSACIG00000015926	zfr	100	88.360	Amphilophus_citrinellus
ENSDARG00000027109	zfr	100	80.165	ENSAOCG00000013876	zfr	100	80.349	Amphiprion_ocellaris
ENSDARG00000027109	zfr	100	83.196	ENSAPEG00000024383	zfr	100	83.196	Amphiprion_percula
ENSDARG00000027109	zfr	100	83.779	ENSATEG00000010271	zfr	100	83.410	Anabas_testudineus
ENSDARG00000027109	zfr	80	73.722	ENSAPLG00000015627	-	100	73.127	Anas_platyrhynchos
ENSDARG00000027109	zfr	100	77.604	ENSACAG00000007880	ZFR	100	76.866	Anolis_carolinensis
ENSDARG00000027109	zfr	100	78.396	ENSANAG00000023333	ZFR	100	77.532	Aotus_nancymaae
ENSDARG00000027109	zfr	94	88.360	ENSACLG00000016832	zfr	100	88.360	Astatotilapia_calliptera
ENSDARG00000027109	zfr	100	87.830	ENSAMXG00000019511	zfr	100	89.057	Astyanax_mexicanus
ENSDARG00000027109	zfr	100	79.285	ENSBTAG00000008414	ZFR	96	82.336	Bos_taurus
ENSDARG00000027109	zfr	100	78.396	ENSCJAG00000018740	ZFR	100	83.590	Callithrix_jacchus
ENSDARG00000027109	zfr	100	76.706	ENSCAFG00000018886	ZFR	99	77.598	Canis_familiaris
ENSDARG00000027109	zfr	100	78.558	ENSCAFG00020016859	-	100	83.590	Canis_lupus_dingo
ENSDARG00000027109	zfr	100	79.377	ENSCHIG00000007710	ZFR	100	77.615	Capra_hircus
ENSDARG00000027109	zfr	99	77.851	ENSTSYG00000010670	ZFR	99	77.500	Carlito_syrichta
ENSDARG00000027109	zfr	98	63.127	ENSCAPG00000015655	ZFR	100	60.811	Cavia_aperea
ENSDARG00000027109	zfr	98	73.436	ENSCPOG00000000862	ZFR	100	72.474	Cavia_porcellus
ENSDARG00000027109	zfr	100	78.487	ENSCCAG00000024473	ZFR	100	77.624	Cebus_capucinus
ENSDARG00000027109	zfr	100	78.453	ENSCATG00000038311	ZFR	100	77.532	Cercocebus_atys
ENSDARG00000027109	zfr	99	77.830	ENSCLAG00000007408	ZFR	100	77.692	Chinchilla_lanigera
ENSDARG00000027109	zfr	100	78.545	ENSCSAG00000017180	ZFR	100	77.624	Chlorocebus_sabaeus
ENSDARG00000027109	zfr	91	66.575	ENSCHOG00000003848	ZFR	95	64.932	Choloepus_hoffmanni
ENSDARG00000027109	zfr	100	80.258	ENSCPBG00000024211	ZFR	100	79.059	Chrysemys_picta_bellii
ENSDARG00000027109	zfr	100	78.545	ENSCANG00000017807	ZFR	100	77.624	Colobus_angolensis_palliatus
ENSDARG00000027109	zfr	100	78.943	ENSCGRG00001016009	Zfr	100	77.993	Cricetulus_griseus_chok1gshd
ENSDARG00000027109	zfr	99	78.216	ENSCGRG00000001228	Zfr	98	77.135	Cricetulus_griseus_crigri
ENSDARG00000027109	zfr	99	80.776	ENSCSEG00000011169	ZFR	99	81.036	Cynoglossus_semilaevis
ENSDARG00000027109	zfr	97	80.429	ENSCSEG00000009224	zfr	84	85.222	Cynoglossus_semilaevis
ENSDARG00000027109	zfr	99	80.283	ENSCVAG00000016494	zfr	99	79.490	Cyprinodon_variegatus
ENSDARG00000027109	zfr	100	78.755	ENSDNOG00000008852	ZFR	100	77.461	Dasypus_novemcinctus
ENSDARG00000027109	zfr	100	77.484	ENSDORG00000016643	Zfr	100	77.880	Dipodomys_ordii
ENSDARG00000027109	zfr	100	73.819	ENSETEG00000008937	ZFR	100	73.796	Echinops_telfairi
ENSDARG00000027109	zfr	51	61.835	ENSEBUG00000012503	-	94	60.482	Eptatretus_burgeri
ENSDARG00000027109	zfr	100	78.558	ENSEASG00005007104	ZFR	100	77.604	Equus_asinus_asinus
ENSDARG00000027109	zfr	82	77.026	ENSECAG00000012851	ZFR	99	76.067	Equus_caballus
ENSDARG00000027109	zfr	94	69.960	ENSEEUG00000014206	ZFR	81	81.733	Erinaceus_europaeus
ENSDARG00000027109	zfr	99	72.702	ENSELUG00000022743	zfr	99	73.151	Esox_lucius
ENSDARG00000027109	zfr	100	78.558	ENSFCAG00000000354	ZFR	100	77.604	Felis_catus
ENSDARG00000027109	zfr	100	78.571	ENSFALG00000002149	ZFR	100	78.253	Ficedula_albicollis
ENSDARG00000027109	zfr	100	78.102	ENSFDAG00000012993	ZFR	100	77.260	Fukomys_damarensis
ENSDARG00000027109	zfr	55	79.074	ENSFHEG00000012064	zfr	96	75.041	Fundulus_heteroclitus
ENSDARG00000027109	zfr	94	91.892	ENSGMOG00000003967	zfr	93	90.323	Gadus_morhua
ENSDARG00000027109	zfr	100	79.796	ENSGALG00000003235	-	100	79.240	Gallus_gallus
ENSDARG00000027109	zfr	100	79.278	ENSGALG00000034488	-	100	78.261	Gallus_gallus
ENSDARG00000027109	zfr	83	84.496	ENSGAFG00000016229	zfr	96	85.156	Gambusia_affinis
ENSDARG00000027109	zfr	99	79.656	ENSGACG00000005045	zfr	100	77.939	Gasterosteus_aculeatus
ENSDARG00000027109	zfr	95	79.707	ENSGAGG00000013544	ZFR	99	78.634	Gopherus_agassizii
ENSDARG00000027109	zfr	100	78.487	ENSGGOG00000016302	ZFR	100	77.532	Gorilla_gorilla
ENSDARG00000027109	zfr	100	78.821	ENSHGLG00000008088	ZFR	100	77.901	Heterocephalus_glaber_female
ENSDARG00000027109	zfr	98	78.750	ENSHGLG00100016776	ZFR	99	77.692	Heterocephalus_glaber_male
ENSDARG00000027109	zfr	100	82.087	ENSHCOG00000001548	zfr	100	81.440	Hippocampus_comes
ENSDARG00000027109	zfr	100	87.904	ENSIPUG00000008192	zfr	100	89.197	Ictalurus_punctatus
ENSDARG00000027109	zfr	100	78.552	ENSSTOG00000008742	ZFR	100	77.778	Ictidomys_tridecemlineatus
ENSDARG00000027109	zfr	98	74.905	ENSJJAG00000023064	Zfr	97	74.398	Jaculus_jaculus
ENSDARG00000027109	zfr	91	79.779	ENSKMAG00000009468	zfr	99	81.928	Kryptolebias_marmoratus
ENSDARG00000027109	zfr	100	82.143	ENSLBEG00000010783	zfr	100	81.400	Labrus_bergylta
ENSDARG00000027109	zfr	100	75.805	ENSLACG00000000831	ZFR	100	76.265	Latimeria_chalumnae
ENSDARG00000027109	zfr	100	83.063	ENSLOCG00000006727	zfr	100	83.604	Lepisosteus_oculatus
ENSDARG00000027109	zfr	100	78.216	ENSLAFG00000002308	ZFR	100	76.648	Loxodonta_africana
ENSDARG00000027109	zfr	100	78.008	ENSMFAG00000042691	ZFR	100	76.611	Macaca_fascicularis
ENSDARG00000027109	zfr	100	78.453	ENSMMUG00000001317	ZFR	100	77.532	Macaca_mulatta
ENSDARG00000027109	zfr	97	82.051	ENSMNEG00000029441	ZFR	100	82.336	Macaca_nemestrina
ENSDARG00000027109	zfr	99	78.332	ENSMLEG00000028503	ZFR	100	77.277	Mandrillus_leucophaeus
ENSDARG00000027109	zfr	100	82.061	ENSMAMG00000017351	zfr	98	85.629	Mastacembelus_armatus
ENSDARG00000027109	zfr	94	88.360	ENSMZEG00005021243	zfr	100	88.360	Maylandia_zebra
ENSDARG00000027109	zfr	98	66.476	ENSMGAG00000002841	ZFR	71	69.717	Meleagris_gallopavo
ENSDARG00000027109	zfr	100	78.923	ENSMAUG00000000976	Zfr	100	77.327	Mesocricetus_auratus
ENSDARG00000027109	zfr	100	78.396	ENSMICG00000001244	ZFR	100	77.901	Microcebus_murinus
ENSDARG00000027109	zfr	100	78.760	ENSMOCG00000018630	Zfr	100	77.716	Microtus_ochrogaster
ENSDARG00000027109	zfr	100	78.644	ENSMMOG00000012585	zfr	90	80.190	Mola_mola
ENSDARG00000027109	zfr	100	79.428	ENSMODG00000020412	ZFR	100	78.393	Monodelphis_domestica
ENSDARG00000027109	zfr	95	91.892	ENSMALG00000007123	zfr	94	96.774	Monopterus_albus
ENSDARG00000027109	zfr	100	78.851	MGP_CAROLIEiJ_G0019681	Zfr	100	77.901	Mus_caroli
ENSDARG00000027109	zfr	100	78.760	ENSMUSG00000022201	Zfr	100	83.286	Mus_musculus
ENSDARG00000027109	zfr	100	78.851	MGP_PahariEiJ_G0016057	Zfr	100	77.901	Mus_pahari
ENSDARG00000027109	zfr	100	78.396	MGP_SPRETEiJ_G0020574	Zfr	100	77.901	Mus_spretus
ENSDARG00000027109	zfr	73	77.475	ENSMPUG00000015193	-	98	77.150	Mustela_putorius_furo
ENSDARG00000027109	zfr	99	79.198	ENSMLUG00000011797	ZFR	99	77.735	Myotis_lucifugus
ENSDARG00000027109	zfr	100	78.780	ENSNGAG00000018328	Zfr	100	78.033	Nannospalax_galili
ENSDARG00000027109	zfr	94	88.360	ENSNBRG00000008378	zfr	100	88.360	Neolamprologus_brichardi
ENSDARG00000027109	zfr	99	78.626	ENSNLEG00000014098	ZFR	100	77.085	Nomascus_leucogenys
ENSDARG00000027109	zfr	98	73.988	ENSMEUG00000010225	ZFR	100	73.095	Notamacropus_eugenii
ENSDARG00000027109	zfr	82	84.000	ENSOPRG00000016756	ZFR	84	84.000	Ochotona_princeps
ENSDARG00000027109	zfr	98	78.709	ENSODEG00000001990	ZFR	100	77.649	Octodon_degus
ENSDARG00000027109	zfr	81	76.096	ENSONIG00000013960	zfr	79	81.087	Oreochromis_niloticus
ENSDARG00000027109	zfr	98	80.403	ENSOANG00000014434	ZFR	99	79.135	Ornithorhynchus_anatinus
ENSDARG00000027109	zfr	100	78.558	ENSOCUG00000016737	ZFR	100	77.901	Oryctolagus_cuniculus
ENSDARG00000027109	zfr	99	81.827	ENSORLG00000017243	zfr	99	80.708	Oryzias_latipes
ENSDARG00000027109	zfr	99	81.793	ENSORLG00020014823	zfr	99	80.684	Oryzias_latipes_hni
ENSDARG00000027109	zfr	99	81.793	ENSORLG00015005801	zfr	99	80.684	Oryzias_latipes_hsok
ENSDARG00000027109	zfr	99	82.070	ENSOMEG00000003336	zfr	99	81.533	Oryzias_melastigma
ENSDARG00000027109	zfr	100	75.683	ENSOGAG00000015117	ZFR	100	76.081	Otolemur_garnettii
ENSDARG00000027109	zfr	99	77.767	ENSOARG00000012233	ZFR	100	75.624	Ovis_aries
ENSDARG00000027109	zfr	99	77.851	ENSPPAG00000027447	ZFR	99	77.159	Pan_paniscus
ENSDARG00000027109	zfr	100	78.558	ENSPPRG00000008253	ZFR	100	77.512	Panthera_pardus
ENSDARG00000027109	zfr	99	78.019	ENSPTIG00000010038	ZFR	99	75.510	Panthera_tigris_altaica
ENSDARG00000027109	zfr	100	78.487	ENSPTRG00000016771	ZFR	100	77.532	Pan_troglodytes
ENSDARG00000027109	zfr	100	77.407	ENSPANG00000003729	ZFR	100	76.389	Papio_anubis
ENSDARG00000027109	zfr	100	84.644	ENSPKIG00000016781	ZFR	100	87.368	Paramormyrops_kingsleyae
ENSDARG00000027109	zfr	100	75.181	ENSPKIG00000007596	ZFR	98	78.882	Paramormyrops_kingsleyae
ENSDARG00000027109	zfr	53	82.914	ENSPSIG00000005779	ZFR	95	83.925	Pelodiscus_sinensis
ENSDARG00000027109	zfr	100	66.047	ENSPMGG00000015984	zfr	100	79.883	Periophthalmus_magnuspinnatus
ENSDARG00000027109	zfr	96	77.389	ENSPEMG00000014573	Zfr	98	76.386	Peromyscus_maniculatus_bairdii
ENSDARG00000027109	zfr	97	82.336	ENSPCIG00000020906	ZFR	100	82.621	Phascolarctos_cinereus
ENSDARG00000027109	zfr	99	81.464	ENSPFOG00000005931	zfr	100	81.499	Poecilia_formosa
ENSDARG00000027109	zfr	99	81.574	ENSPREG00000011947	zfr	100	82.037	Poecilia_reticulata
ENSDARG00000027109	zfr	99	77.894	ENSPPYG00000015378	ZFR	99	76.894	Pongo_abelii
ENSDARG00000027109	zfr	100	70.712	ENSPCAG00000007277	ZFR	100	70.783	Procavia_capensis
ENSDARG00000027109	zfr	95	77.831	ENSPCOG00000000045	ZFR	99	77.207	Propithecus_coquereli
ENSDARG00000027109	zfr	94	84.337	ENSPVAG00000004780	ZFR	94	84.337	Pteropus_vampyrus
ENSDARG00000027109	zfr	94	88.360	ENSPNYG00000006239	zfr	100	88.360	Pundamilia_nyererei
ENSDARG00000027109	zfr	100	90.203	ENSPNAG00000025151	zfr	100	93.651	Pygocentrus_nattereri
ENSDARG00000027109	zfr	100	78.760	ENSRNOG00000011627	Zfr	100	85.271	Rattus_norvegicus
ENSDARG00000027109	zfr	100	78.453	ENSRBIG00000041561	ZFR	100	77.532	Rhinopithecus_bieti
ENSDARG00000027109	zfr	100	78.453	ENSRROG00000044008	ZFR	100	77.532	Rhinopithecus_roxellana
ENSDARG00000027109	zfr	98	78.306	ENSSBOG00000024150	ZFR	99	77.308	Saimiri_boliviensis_boliviensis
ENSDARG00000027109	zfr	98	79.231	ENSSHAG00000015478	ZFR	100	78.056	Sarcophilus_harrisii
ENSDARG00000027109	zfr	100	77.256	ENSSFOG00015017300	ZFR	100	76.703	Scleropages_formosus
ENSDARG00000027109	zfr	100	80.604	ENSSMAG00000000320	zfr	98	85.629	Scophthalmus_maximus
ENSDARG00000027109	zfr	100	83.021	ENSSDUG00000013882	zfr	98	86.826	Seriola_dumerili
ENSDARG00000027109	zfr	94	81.731	ENSSLDG00000000762	zfr	98	86.826	Seriola_lalandi_dorsalis
ENSDARG00000027109	zfr	92	86.099	ENSSARG00000006571	ZFR	92	86.099	Sorex_araneus
ENSDARG00000027109	zfr	98	79.175	ENSSPUG00000016786	ZFR	100	77.981	Sphenodon_punctatus
ENSDARG00000027109	zfr	100	83.456	ENSSPAG00000019293	zfr	100	83.824	Stegastes_partitus
ENSDARG00000027109	zfr	100	79.102	ENSSSCG00000027681	ZFR	100	83.590	Sus_scrofa
ENSDARG00000027109	zfr	100	78.799	ENSTGUG00000001909	ZFR	100	78.140	Taeniopygia_guttata
ENSDARG00000027109	zfr	100	82.613	ENSTRUG00000016620	zfr	100	81.601	Takifugu_rubripes
ENSDARG00000027109	zfr	58	75.767	ENSTNIG00000018856	zfr	96	76.871	Tetraodon_nigroviridis
ENSDARG00000027109	zfr	94	72.852	ENSTBEG00000017687	ZFR	90	85.915	Tupaia_belangeri
ENSDARG00000027109	zfr	98	77.129	ENSTTRG00000017321	ZFR	100	73.641	Tursiops_truncatus
ENSDARG00000027109	zfr	80	76.573	ENSUAMG00000000172	-	99	75.532	Ursus_americanus
ENSDARG00000027109	zfr	80	76.573	ENSUMAG00000013805	-	99	75.532	Ursus_maritimus
ENSDARG00000027109	zfr	98	78.927	ENSVPAG00000011011	ZFR	100	75.023	Vicugna_pacos
ENSDARG00000027109	zfr	100	78.558	ENSVVUG00000022171	-	100	77.604	Vulpes_vulpes
ENSDARG00000027109	zfr	100	73.611	ENSXETG00000015598	zfr	100	72.500	Xenopus_tropicalis
ENSDARG00000027109	zfr	99	81.019	ENSXCOG00000009361	zfr	99	80.556	Xiphophorus_couchianus
ENSDARG00000027109	zfr	99	81.019	ENSXMAG00000013356	zfr	99	80.556	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function