EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000027143 (Gene tree)
Gene ID: 405797
Gene Symbol: aptx
Alias: FHA-HIT
Full Name: aprataxin
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6086 bases
Position: chr1:52653626-52659711
Accession: ZDB-GENE-040628-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000035368	DcpS_C	PF11969.8	3.9e-35	1	1
ENSDARP00000125307	DcpS_C	PF11969.8	2.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000029252	-	1303	XM_005160130	ENSDARP00000035368	324 (aa)	XP_005160187	B8A444
ENSDART00000150862	-	797	-	ENSDARP00000125307	247 (aa)	-	H0WEM9
ENSDART00000150568	-	867	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000027143's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000027143's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000027143	aptx	99	57.988	ENSG00000137074	APTX	92	74.737	Homo_sapiens
ENSDARG00000027143	aptx	99	66.962	ENSAPOG00000008785	aptx	99	66.766	Acanthochromis_polyacanthus
ENSDARG00000027143	aptx	99	57.941	ENSAMEG00000007648	APTX	96	57.941	Ailuropoda_melanoleuca
ENSDARG00000027143	aptx	99	64.815	ENSACIG00000002035	aptx	99	64.923	Amphilophus_citrinellus
ENSDARG00000027143	aptx	99	67.470	ENSAOCG00000000634	aptx	99	67.359	Amphiprion_ocellaris
ENSDARG00000027143	aptx	99	67.470	ENSAPEG00000017253	aptx	99	67.359	Amphiprion_percula
ENSDARG00000027143	aptx	99	68.373	ENSATEG00000017383	aptx	99	68.142	Anabas_testudineus
ENSDARG00000027143	aptx	90	52.978	ENSAPLG00000015645	APTX	99	51.724	Anas_platyrhynchos
ENSDARG00000027143	aptx	99	52.770	ENSACAG00000003581	APTX	95	52.786	Anolis_carolinensis
ENSDARG00000027143	aptx	99	57.988	ENSANAG00000030160	APTX	96	58.438	Aotus_nancymaae
ENSDARG00000027143	aptx	99	66.374	ENSACLG00000018887	aptx	100	66.964	Astatotilapia_calliptera
ENSDARG00000027143	aptx	100	72.515	ENSAMXG00000039899	aptx	100	71.681	Astyanax_mexicanus
ENSDARG00000027143	aptx	99	57.396	ENSBTAG00000013947	APTX	97	56.509	Bos_taurus
ENSDARG00000027143	aptx	99	57.353	ENSCJAG00000007940	APTX	99	57.396	Callithrix_jacchus
ENSDARG00000027143	aptx	99	57.941	ENSCAFG00000001812	APTX	99	57.353	Canis_familiaris
ENSDARG00000027143	aptx	99	57.941	ENSCAFG00020015598	APTX	99	57.353	Canis_lupus_dingo
ENSDARG00000027143	aptx	99	57.101	ENSCHIG00000012896	APTX	99	55.917	Capra_hircus
ENSDARG00000027143	aptx	99	56.637	ENSTSYG00000003041	APTX	99	56.213	Carlito_syrichta
ENSDARG00000027143	aptx	63	68.944	ENSCAPG00000013470	APTX	99	68.944	Cavia_aperea
ENSDARG00000027143	aptx	99	55.621	ENSCPOG00000005975	APTX	99	71.111	Cavia_porcellus
ENSDARG00000027143	aptx	99	58.065	ENSCCAG00000036783	APTX	99	57.396	Cebus_capucinus
ENSDARG00000027143	aptx	99	57.941	ENSCATG00000042639	APTX	95	57.732	Cercocebus_atys
ENSDARG00000027143	aptx	99	57.357	ENSCLAG00000012185	APTX	99	72.222	Chinchilla_lanigera
ENSDARG00000027143	aptx	99	57.647	ENSCSAG00000009885	APTX	95	57.101	Chlorocebus_sabaeus
ENSDARG00000027143	aptx	99	55.840	ENSCPBG00000023973	APTX	98	55.966	Chrysemys_picta_bellii
ENSDARG00000027143	aptx	97	40.390	ENSCING00000008741	-	94	39.833	Ciona_intestinalis
ENSDARG00000027143	aptx	98	40.223	ENSCSAVG00000008038	-	97	39.665	Ciona_savignyi
ENSDARG00000027143	aptx	99	57.941	ENSCANG00000037253	APTX	99	56.686	Colobus_angolensis_palliatus
ENSDARG00000027143	aptx	98	59.104	ENSCGRG00001000705	Aptx	98	72.778	Cricetulus_griseus_chok1gshd
ENSDARG00000027143	aptx	98	59.104	ENSCGRG00000014159	Aptx	98	72.778	Cricetulus_griseus_crigri
ENSDARG00000027143	aptx	99	65.882	ENSCSEG00000009549	aptx	99	65.766	Cynoglossus_semilaevis
ENSDARG00000027143	aptx	99	65.663	ENSCVAG00000011942	aptx	99	65.060	Cyprinodon_variegatus
ENSDARG00000027143	aptx	99	57.647	ENSDNOG00000018498	APTX	96	58.235	Dasypus_novemcinctus
ENSDARG00000027143	aptx	100	60.317	ENSDORG00000002139	Aptx	99	70.556	Dipodomys_ordii
ENSDARG00000027143	aptx	54	40.341	FBgn0038704	CG5316	87	44.262	Drosophila_melanogaster
ENSDARG00000027143	aptx	81	55.714	ENSETEG00000012459	APTX	79	55.556	Echinops_telfairi
ENSDARG00000027143	aptx	98	48.555	ENSEBUG00000013914	aptx	95	48.555	Eptatretus_burgeri
ENSDARG00000027143	aptx	99	57.478	ENSEASG00005004566	APTX	99	56.765	Equus_asinus_asinus
ENSDARG00000027143	aptx	99	57.771	ENSECAG00000012674	APTX	92	57.059	Equus_caballus
ENSDARG00000027143	aptx	100	55.472	ENSEEUG00000010693	APTX	95	58.076	Erinaceus_europaeus
ENSDARG00000027143	aptx	99	57.941	ENSFCAG00000008728	APTX	99	57.647	Felis_catus
ENSDARG00000027143	aptx	99	56.268	ENSFALG00000001230	APTX	99	55.685	Ficedula_albicollis
ENSDARG00000027143	aptx	99	57.538	ENSFDAG00000013752	APTX	99	68.889	Fukomys_damarensis
ENSDARG00000027143	aptx	81	62.369	ENSFHEG00000021328	aptx	73	62.369	Fundulus_heteroclitus
ENSDARG00000027143	aptx	99	64.759	ENSGMOG00000012505	aptx	99	64.545	Gadus_morhua
ENSDARG00000027143	aptx	99	53.161	ENSGALG00000001954	APTX	99	52.436	Gallus_gallus
ENSDARG00000027143	aptx	99	66.265	ENSGAFG00000005086	aptx	99	66.265	Gambusia_affinis
ENSDARG00000027143	aptx	100	67.868	ENSGACG00000017887	aptx	99	67.267	Gasterosteus_aculeatus
ENSDARG00000027143	aptx	99	55.398	ENSGAGG00000013230	APTX	99	55.398	Gopherus_agassizii
ENSDARG00000027143	aptx	100	56.061	ENSGGOG00000014232	APTX	95	56.522	Gorilla_gorilla
ENSDARG00000027143	aptx	99	66.374	ENSHBUG00000021058	aptx	100	66.964	Haplochromis_burtoni
ENSDARG00000027143	aptx	99	57.229	ENSHGLG00000015093	APTX	99	69.444	Heterocephalus_glaber_female
ENSDARG00000027143	aptx	99	57.229	ENSHGLG00100013482	APTX	99	69.444	Heterocephalus_glaber_male
ENSDARG00000027143	aptx	99	67.901	ENSHCOG00000018216	aptx	96	67.391	Hippocampus_comes
ENSDARG00000027143	aptx	100	67.251	ENSIPUG00000017548	aptx	100	66.667	Ictalurus_punctatus
ENSDARG00000027143	aptx	99	57.530	ENSSTOG00000005185	APTX	99	69.444	Ictidomys_tridecemlineatus
ENSDARG00000027143	aptx	99	56.402	ENSJJAG00000015653	Aptx	99	56.402	Jaculus_jaculus
ENSDARG00000027143	aptx	99	64.653	ENSKMAG00000000117	aptx	99	64.653	Kryptolebias_marmoratus
ENSDARG00000027143	aptx	100	57.407	ENSLBEG00000021489	APTX	100	56.481	Labrus_bergylta
ENSDARG00000027143	aptx	100	63.889	ENSLBEG00000015353	aptx	100	62.963	Labrus_bergylta
ENSDARG00000027143	aptx	99	54.802	ENSLACG00000003376	APTX	99	53.672	Latimeria_chalumnae
ENSDARG00000027143	aptx	99	64.058	ENSLOCG00000011556	aptx	96	63.848	Lepisosteus_oculatus
ENSDARG00000027143	aptx	99	57.059	ENSLAFG00000005665	APTX	99	57.059	Loxodonta_africana
ENSDARG00000027143	aptx	99	57.647	ENSMFAG00000043141	APTX	96	57.101	Macaca_fascicularis
ENSDARG00000027143	aptx	99	57.647	ENSMMUG00000007724	APTX	95	57.732	Macaca_mulatta
ENSDARG00000027143	aptx	99	57.353	ENSMNEG00000042341	APTX	99	56.805	Macaca_nemestrina
ENSDARG00000027143	aptx	99	57.941	ENSMLEG00000035137	APTX	99	57.396	Mandrillus_leucophaeus
ENSDARG00000027143	aptx	99	67.470	ENSMAMG00000018377	aptx	99	66.867	Mastacembelus_armatus
ENSDARG00000027143	aptx	99	66.082	ENSMZEG00005022621	aptx	100	66.667	Maylandia_zebra
ENSDARG00000027143	aptx	55	68.539	ENSMGAG00000005736	APTX	98	68.539	Meleagris_gallopavo
ENSDARG00000027143	aptx	98	58.507	ENSMAUG00000006039	Aptx	98	71.111	Mesocricetus_auratus
ENSDARG00000027143	aptx	99	56.805	ENSMICG00000006603	APTX	96	57.396	Microcebus_murinus
ENSDARG00000027143	aptx	99	57.831	ENSMOCG00000000869	Aptx	99	71.667	Microtus_ochrogaster
ENSDARG00000027143	aptx	100	66.766	ENSMMOG00000007028	aptx	100	65.868	Mola_mola
ENSDARG00000027143	aptx	98	53.779	ENSMODG00000003365	APTX	98	52.616	Monodelphis_domestica
ENSDARG00000027143	aptx	99	59.337	ENSMALG00000003828	aptx	99	56.598	Monopterus_albus
ENSDARG00000027143	aptx	74	70.556	MGP_CAROLIEiJ_G0025897	-	99	71.348	Mus_caroli
ENSDARG00000027143	aptx	99	57.658	ENSMUSG00000028411	Aptx	99	71.910	Mus_musculus
ENSDARG00000027143	aptx	99	57.057	MGP_PahariEiJ_G0024020	Aptx	99	56.627	Mus_pahari
ENSDARG00000027143	aptx	99	57.658	MGP_SPRETEiJ_G0026846	Aptx	96	57.530	Mus_spretus
ENSDARG00000027143	aptx	99	58.358	ENSMPUG00000004290	APTX	99	58.358	Mustela_putorius_furo
ENSDARG00000027143	aptx	99	57.771	ENSMLUG00000016081	APTX	94	57.353	Myotis_lucifugus
ENSDARG00000027143	aptx	99	58.951	ENSNGAG00000016314	Aptx	99	71.111	Nannospalax_galili
ENSDARG00000027143	aptx	99	67.069	ENSNBRG00000014199	aptx	100	66.465	Neolamprologus_brichardi
ENSDARG00000027143	aptx	99	57.988	ENSNLEG00000032184	APTX	99	57.396	Nomascus_leucogenys
ENSDARG00000027143	aptx	99	54.142	ENSMEUG00000004153	APTX	98	54.142	Notamacropus_eugenii
ENSDARG00000027143	aptx	100	54.135	ENSOPRG00000012403	APTX	95	57.192	Ochotona_princeps
ENSDARG00000027143	aptx	99	58.485	ENSODEG00000015832	-	99	70.556	Octodon_degus
ENSDARG00000027143	aptx	99	51.713	ENSODEG00000000097	-	99	51.713	Octodon_degus
ENSDARG00000027143	aptx	99	66.767	ENSONIG00000014541	aptx	83	66.369	Oreochromis_niloticus
ENSDARG00000027143	aptx	100	50.542	ENSOANG00000009878	APTX	98	52.258	Ornithorhynchus_anatinus
ENSDARG00000027143	aptx	99	57.227	ENSOCUG00000000738	-	98	56.897	Oryctolagus_cuniculus
ENSDARG00000027143	aptx	74	71.111	ENSOCUG00000025059	-	91	71.111	Oryctolagus_cuniculus
ENSDARG00000027143	aptx	99	63.393	ENSORLG00000006237	aptx	99	63.746	Oryzias_latipes
ENSDARG00000027143	aptx	99	64.653	ENSORLG00020021478	aptx	99	64.048	Oryzias_latipes_hni
ENSDARG00000027143	aptx	99	65.635	ENSORLG00015021873	aptx	99	65.325	Oryzias_latipes_hsok
ENSDARG00000027143	aptx	90	60.377	ENSOMEG00000007875	aptx	88	60.635	Oryzias_melastigma
ENSDARG00000027143	aptx	99	57.101	ENSOGAG00000005388	APTX	95	57.101	Otolemur_garnettii
ENSDARG00000027143	aptx	99	56.932	ENSOARG00000009598	APTX	95	56.213	Ovis_aries
ENSDARG00000027143	aptx	99	57.692	ENSPPAG00000030295	APTX	95	58.419	Pan_paniscus
ENSDARG00000027143	aptx	99	57.941	ENSPPRG00000017524	APTX	99	57.647	Panthera_pardus
ENSDARG00000027143	aptx	99	57.941	ENSPTIG00000020000	APTX	99	57.647	Panthera_tigris_altaica
ENSDARG00000027143	aptx	99	57.692	ENSPTRG00000020850	APTX	99	57.692	Pan_troglodytes
ENSDARG00000027143	aptx	99	57.647	ENSPANG00000025301	APTX	95	57.732	Papio_anubis
ENSDARG00000027143	aptx	99	64.265	ENSPKIG00000013601	aptx	99	64.265	Paramormyrops_kingsleyae
ENSDARG00000027143	aptx	99	59.064	ENSPSIG00000010521	APTX	95	59.064	Pelodiscus_sinensis
ENSDARG00000027143	aptx	99	58.892	ENSPMGG00000018649	aptx	100	58.309	Periophthalmus_magnuspinnatus
ENSDARG00000027143	aptx	99	57.270	ENSPEMG00000007747	Aptx	99	70.000	Peromyscus_maniculatus_bairdii
ENSDARG00000027143	aptx	99	44.706	ENSPMAG00000008417	aptx	97	45.000	Petromyzon_marinus
ENSDARG00000027143	aptx	99	57.184	ENSPCIG00000029852	APTX	99	56.897	Phascolarctos_cinereus
ENSDARG00000027143	aptx	99	67.062	ENSPFOG00000005131	-	99	65.579	Poecilia_formosa
ENSDARG00000027143	aptx	99	67.062	ENSPFOG00000004992	aptx	99	65.579	Poecilia_formosa
ENSDARG00000027143	aptx	99	67.062	ENSPLAG00000007960	APTX	99	65.579	Poecilia_latipinna
ENSDARG00000027143	aptx	99	67.062	ENSPLAG00000007906	aptx	99	65.579	Poecilia_latipinna
ENSDARG00000027143	aptx	99	67.359	ENSPMEG00000018504	aptx	99	65.875	Poecilia_mexicana
ENSDARG00000027143	aptx	99	67.359	ENSPMEG00000019789	APTX	99	65.875	Poecilia_mexicana
ENSDARG00000027143	aptx	99	63.467	ENSPREG00000004375	aptx	99	64.000	Poecilia_reticulata
ENSDARG00000027143	aptx	99	57.692	ENSPPYG00000019142	APTX	95	57.101	Pongo_abelii
ENSDARG00000027143	aptx	96	51.172	ENSPCAG00000010014	APTX	99	45.000	Procavia_capensis
ENSDARG00000027143	aptx	99	57.101	ENSPCOG00000016780	APTX	99	56.509	Propithecus_coquereli
ENSDARG00000027143	aptx	99	56.891	ENSPVAG00000011468	APTX	96	55.000	Pteropus_vampyrus
ENSDARG00000027143	aptx	99	66.374	ENSPNYG00000007675	aptx	100	66.964	Pundamilia_nyererei
ENSDARG00000027143	aptx	100	69.164	ENSPNAG00000015984	aptx	100	68.513	Pygocentrus_nattereri
ENSDARG00000027143	aptx	99	58.055	ENSRNOG00000006582	Aptx	99	58.485	Rattus_norvegicus
ENSDARG00000027143	aptx	99	57.647	ENSRBIG00000042913	APTX	99	56.805	Rhinopithecus_bieti
ENSDARG00000027143	aptx	99	57.647	ENSRROG00000035395	APTX	99	56.805	Rhinopithecus_roxellana
ENSDARG00000027143	aptx	99	57.941	ENSSBOG00000025215	APTX	99	57.692	Saimiri_boliviensis_boliviensis
ENSDARG00000027143	aptx	98	58.084	ENSSHAG00000012205	APTX	94	58.084	Sarcophilus_harrisii
ENSDARG00000027143	aptx	99	62.500	ENSSFOG00015009267	aptx	99	62.712	Scleropages_formosus
ENSDARG00000027143	aptx	99	68.675	ENSSMAG00000008839	aptx	99	67.771	Scophthalmus_maximus
ENSDARG00000027143	aptx	99	67.584	ENSSDUG00000001989	aptx	99	66.469	Seriola_dumerili
ENSDARG00000027143	aptx	99	67.062	ENSSLDG00000004915	aptx	99	67.062	Seriola_lalandi_dorsalis
ENSDARG00000027143	aptx	99	54.986	ENSSPUG00000008994	APTX	86	54.131	Sphenodon_punctatus
ENSDARG00000027143	aptx	99	67.751	ENSSPAG00000020373	aptx	99	68.047	Stegastes_partitus
ENSDARG00000027143	aptx	99	56.509	ENSSSCG00000011001	APTX	99	54.624	Sus_scrofa
ENSDARG00000027143	aptx	99	55.394	ENSTGUG00000001441	APTX	99	55.457	Taeniopygia_guttata
ENSDARG00000027143	aptx	100	66.269	ENSTRUG00000009794	aptx	100	66.163	Takifugu_rubripes
ENSDARG00000027143	aptx	100	65.559	ENSTNIG00000010570	aptx	99	65.179	Tetraodon_nigroviridis
ENSDARG00000027143	aptx	99	52.802	ENSTBEG00000008504	APTX	95	51.479	Tupaia_belangeri
ENSDARG00000027143	aptx	100	50.566	ENSTTRG00000007384	APTX	95	52.050	Tursiops_truncatus
ENSDARG00000027143	aptx	99	58.651	ENSUAMG00000003700	APTX	97	57.647	Ursus_americanus
ENSDARG00000027143	aptx	99	58.651	ENSUMAG00000005837	APTX	99	57.647	Ursus_maritimus
ENSDARG00000027143	aptx	81	60.465	ENSVPAG00000001297	APTX	74	60.465	Vicugna_pacos
ENSDARG00000027143	aptx	99	57.941	ENSVVUG00000021130	APTX	99	57.353	Vulpes_vulpes
ENSDARG00000027143	aptx	100	55.460	ENSXETG00000024143	aptx	100	56.196	Xenopus_tropicalis
ENSDARG00000027143	aptx	99	62.817	ENSXCOG00000005020	aptx	99	62.571	Xiphophorus_couchianus
ENSDARG00000027143	aptx	99	66.172	ENSXMAG00000022086	aptx	96	65.282	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000012	single strand break repair	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030983	mismatched DNA binding	21873635.	IBA	Function
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	21873635.	IBA	Function
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0120108	DNA-3'-diphospho-5'-guanosine diphosphatase	-	IEA	Function
GO:1990165	single-strand break-containing DNA binding	21873635.	IBA	Function