EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000027649 (Gene tree)
Gene ID
324554
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
13688 bases
Position
chr20:29619820-29633507
Accession
ZDB-GENE-030131-3275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000040291CPSF73-100_CPF11718.81.5e-5311
ENSDARP00000040291Beta-CaspPF10996.81.4e-3311
ENSDARP00000040291Lactamase_BPF00753.272.2e-1811
ENSDARP00000040291RMMBLPF07521.122.8e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000153029-687--- (aa)--
ENSDART00000040292-2576-ENSDARP00000040291690 (aa)-Q5U3T4
ENSDART00000139469-501--- (aa)--
Gene Model
Click here to download ENSDARG00000027649's gene model file
Pathways
Pathway IDPathway NameSource
dre03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000027649's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000027649cpsf37038.431ENSDARG00000025212ints119742.130
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000027649cpsf39888.971ENSG00000119203CPSF3100100.000Homo_sapiens
ENSDARG00000027649cpsf37498.035ENSAPOG00000012241CPSF39198.035Acanthochromis_polyacanthus
ENSDARG00000027649cpsf310086.812ENSAPOG00000022087cpsf310086.812Acanthochromis_polyacanthus
ENSDARG00000027649cpsf39889.118ENSAMEG00000008493CPSF39989.118Ailuropoda_melanoleuca
ENSDARG00000027649cpsf39783.810ENSACIG00000009846cpsf310078.148Amphilophus_citrinellus
ENSDARG00000027649cpsf39187.956ENSACIG00000023663CPSF310081.766Amphilophus_citrinellus
ENSDARG00000027649cpsf310090.145ENSAOCG00000010077CPSF310090.145Amphiprion_ocellaris
ENSDARG00000027649cpsf310086.812ENSAOCG00000022056cpsf310089.331Amphiprion_ocellaris
ENSDARG00000027649cpsf310086.957ENSAPEG00000019526cpsf39988.889Amphiprion_percula
ENSDARG00000027649cpsf310090.145ENSAPEG00000021167CPSF310090.145Amphiprion_percula
ENSDARG00000027649cpsf39986.919ENSATEG00000003959cpsf39986.919Anabas_testudineus
ENSDARG00000027649cpsf310085.507ENSATEG00000014525CPSF310085.507Anabas_testudineus
ENSDARG00000027649cpsf39788.227ENSAPLG00000006941CPSF39888.227Anas_platyrhynchos
ENSDARG00000027649cpsf39286.321ENSACAG00000001759CPSF39986.321Anolis_carolinensis
ENSDARG00000027649cpsf39883.824ENSANAG00000031254CPSF39984.258Aotus_nancymaae
ENSDARG00000027649cpsf39187.956ENSACLG00000018846CPSF310081.621Astatotilapia_calliptera
ENSDARG00000027649cpsf39786.937ENSACLG00000014484cpsf39986.937Astatotilapia_calliptera
ENSDARG00000027649cpsf310091.594ENSAMXG00000004786cpsf310091.594Astyanax_mexicanus
ENSDARG00000027649cpsf39889.118ENSBTAG00000019735CPSF39989.118Bos_taurus
ENSDARG00000027649cpsf38660.461WBGene00013460cpsf-38660.461Caenorhabditis_elegans
ENSDARG00000027649cpsf39888.824ENSCJAG00000006276CPSF39988.824Callithrix_jacchus
ENSDARG00000027649cpsf39889.118ENSCAFG00000003375CPSF39589.118Canis_familiaris
ENSDARG00000027649cpsf38991.558ENSCAFG00020026799CPSF39991.558Canis_lupus_dingo
ENSDARG00000027649cpsf39889.118ENSCHIG00000013973CPSF39989.118Capra_hircus
ENSDARG00000027649cpsf39888.971ENSTSYG00000002967CPSF39988.971Carlito_syrichta
ENSDARG00000027649cpsf39688.138ENSCAPG00000013851CPSF39988.138Cavia_aperea
ENSDARG00000027649cpsf39888.235ENSCPOG00000011299CPSF39988.235Cavia_porcellus
ENSDARG00000027649cpsf39888.824ENSCCAG00000036730CPSF39988.824Cebus_capucinus
ENSDARG00000027649cpsf39886.765ENSCATG00000014770CPSF39994.118Cercocebus_atys
ENSDARG00000027649cpsf39887.941ENSCLAG00000002727CPSF39987.941Chinchilla_lanigera
ENSDARG00000027649cpsf39881.029ENSCSAG00000007125CPSF39981.029Chlorocebus_sabaeus
ENSDARG00000027649cpsf385100.000ENSCHOG00000000180CPSF38563.620Choloepus_hoffmanni
ENSDARG00000027649cpsf39988.261ENSCPBG00000014074CPSF39988.261Chrysemys_picta_bellii
ENSDARG00000027649cpsf39867.638ENSCING00000007214-9867.638Ciona_intestinalis
ENSDARG00000027649cpsf39879.529ENSCANG00000034435CPSF39979.529Colobus_angolensis_palliatus
ENSDARG00000027649cpsf39888.529ENSCGRG00001013134Cpsf39988.529Cricetulus_griseus_chok1gshd
ENSDARG00000027649cpsf39888.529ENSCGRG00000018319Cpsf39988.529Cricetulus_griseus_crigri
ENSDARG00000027649cpsf310088.567ENSCSEG00000002021CPSF310088.567Cynoglossus_semilaevis
ENSDARG00000027649cpsf310089.710ENSCVAG00000015067CPSF310089.710Cyprinodon_variegatus
ENSDARG00000027649cpsf39887.665ENSDNOG00000008940CPSF39587.665Dasypus_novemcinctus
ENSDARG00000027649cpsf39489.660ENSDORG00000014263Cpsf39989.660Dipodomys_ordii
ENSDARG00000027649cpsf39966.087FBgn0261065Cpsf739966.087Drosophila_melanogaster
ENSDARG00000027649cpsf39477.778ENSETEG00000003893CPSF39977.778Echinops_telfairi
ENSDARG00000027649cpsf39975.211ENSEBUG00000009018cpsf39975.493Eptatretus_burgeri
ENSDARG00000027649cpsf39889.118ENSEASG00005003970CPSF39989.118Equus_asinus_asinus
ENSDARG00000027649cpsf39889.118ENSECAG00000019911CPSF39693.761Equus_caballus
ENSDARG00000027649cpsf39873.824ENSEEUG00000015422CPSF39973.824Erinaceus_europaeus
ENSDARG00000027649cpsf39990.407ENSELUG00000013775cpsf39990.407Esox_lucius
ENSDARG00000027649cpsf39889.118ENSFCAG00000007852CPSF39989.118Felis_catus
ENSDARG00000027649cpsf39387.926ENSFALG00000006572CPSF39987.926Ficedula_albicollis
ENSDARG00000027649cpsf39887.923ENSFDAG00000006317CPSF39987.923Fukomys_damarensis
ENSDARG00000027649cpsf310086.957ENSFHEG00000014774cpsf310086.957Fundulus_heteroclitus
ENSDARG00000027649cpsf35970.244ENSFHEG00000012186CPSF310070.244Fundulus_heteroclitus
ENSDARG00000027649cpsf310088.116ENSGMOG00000003157cpsf310088.116Gadus_morhua
ENSDARG00000027649cpsf39987.645ENSGALG00000016424CPSF39987.645Gallus_gallus
ENSDARG00000027649cpsf39184.420ENSGAFG00000019449cpsf310078.551Gambusia_affinis
ENSDARG00000027649cpsf310089.855ENSGAFG00000008016CPSF310089.855Gambusia_affinis
ENSDARG00000027649cpsf36884.582ENSGAGG00000025583CPSF39384.582Gopherus_agassizii
ENSDARG00000027649cpsf39886.763ENSGGOG00000001757CPSF39198.280Gorilla_gorilla
ENSDARG00000027649cpsf310086.812ENSHBUG00000001188cpsf310086.812Haplochromis_burtoni
ENSDARG00000027649cpsf35982.108ENSHBUG00000014332CPSF310082.108Haplochromis_burtoni
ENSDARG00000027649cpsf39887.776ENSHGLG00000000666CPSF39887.776Heterocephalus_glaber_female
ENSDARG00000027649cpsf39887.776ENSHGLG00100007765CPSF39887.776Heterocephalus_glaber_male
ENSDARG00000027649cpsf39987.808ENSHCOG00000015957CPSF39987.808Hippocampus_comes
ENSDARG00000027649cpsf39986.357ENSHCOG00000007251cpsf39986.357Hippocampus_comes
ENSDARG00000027649cpsf310091.304ENSIPUG00000023488cpsf310091.304Ictalurus_punctatus
ENSDARG00000027649cpsf39888.971ENSSTOG00000004476CPSF39988.971Ictidomys_tridecemlineatus
ENSDARG00000027649cpsf39888.529ENSJJAG00000023415Cpsf39988.529Jaculus_jaculus
ENSDARG00000027649cpsf310086.522ENSKMAG00000002806cpsf310086.522Kryptolebias_marmoratus
ENSDARG00000027649cpsf310089.420ENSKMAG00000007317CPSF310089.420Kryptolebias_marmoratus
ENSDARG00000027649cpsf39980.814ENSLBEG00000020569cpsf39680.814Labrus_bergylta
ENSDARG00000027649cpsf35481.183ENSLBEG00000015018-9981.183Labrus_bergylta
ENSDARG00000027649cpsf39590.715ENSLBEG00000013492CPSF39990.715Labrus_bergylta
ENSDARG00000027649cpsf310081.187ENSLACG00000008308CPSF310081.187Latimeria_chalumnae
ENSDARG00000027649cpsf310088.600ENSLOCG00000016823cpsf310088.600Lepisosteus_oculatus
ENSDARG00000027649cpsf39887.482ENSLAFG00000009467CPSF39987.482Loxodonta_africana
ENSDARG00000027649cpsf39888.824ENSMFAG00000001339CPSF39495.417Macaca_fascicularis
ENSDARG00000027649cpsf39388.390ENSMMUG00000018038CPSF39295.417Macaca_mulatta
ENSDARG00000027649cpsf39097.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSDARG00000027649cpsf39888.971ENSMLEG00000026825CPSF39298.069Mandrillus_leucophaeus
ENSDARG00000027649cpsf39187.658ENSMAMG00000008835CPSF310081.503Mastacembelus_armatus
ENSDARG00000027649cpsf310086.522ENSMAMG00000003076cpsf310086.522Mastacembelus_armatus
ENSDARG00000027649cpsf310089.710ENSMZEG00005006258CPSF310089.710Maylandia_zebra
ENSDARG00000027649cpsf310086.812ENSMZEG00005014358cpsf310086.812Maylandia_zebra
ENSDARG00000027649cpsf39688.138ENSMGAG00000013995CPSF39988.138Meleagris_gallopavo
ENSDARG00000027649cpsf35480.267ENSMAUG00000000166Cpsf39980.267Mesocricetus_auratus
ENSDARG00000027649cpsf39884.164ENSMICG00000002363CPSF39984.164Microcebus_murinus
ENSDARG00000027649cpsf39885.294ENSMOCG00000020067Cpsf39985.294Microtus_ochrogaster
ENSDARG00000027649cpsf38072.024ENSMMOG00000011923CPSF38578.571Mola_mola
ENSDARG00000027649cpsf39382.609ENSMMOG00000018212CPSF39882.609Mola_mola
ENSDARG00000027649cpsf39887.627ENSMODG00000014703CPSF39987.627Monodelphis_domestica
ENSDARG00000027649cpsf39285.179ENSMALG00000011474CPSF310085.179Monopterus_albus
ENSDARG00000027649cpsf310087.536ENSMALG00000016416cpsf310087.536Monopterus_albus
ENSDARG00000027649cpsf39888.676MGP_CAROLIEiJ_G0017640Cpsf39988.676Mus_caroli
ENSDARG00000027649cpsf39888.676ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSDARG00000027649cpsf39888.529MGP_PahariEiJ_G0029397Cpsf39988.529Mus_pahari
ENSDARG00000027649cpsf39888.676MGP_SPRETEiJ_G0018481Cpsf39988.676Mus_spretus
ENSDARG00000027649cpsf39888.660ENSMPUG00000013213CPSF39988.660Mustela_putorius_furo
ENSDARG00000027649cpsf39888.840ENSMLUG00000010636CPSF39988.840Myotis_lucifugus
ENSDARG00000027649cpsf39888.676ENSNGAG00000019836Cpsf39988.676Nannospalax_galili
ENSDARG00000027649cpsf39187.956ENSNBRG00000010525CPSF310081.621Neolamprologus_brichardi
ENSDARG00000027649cpsf310086.377ENSNBRG00000004770cpsf310086.377Neolamprologus_brichardi
ENSDARG00000027649cpsf39888.824ENSNLEG00000013359CPSF39198.280Nomascus_leucogenys
ENSDARG00000027649cpsf39857.647ENSMEUG00000013117-9957.647Notamacropus_eugenii
ENSDARG00000027649cpsf39880.707ENSOPRG00000008902CPSF39980.707Ochotona_princeps
ENSDARG00000027649cpsf39888.235ENSODEG00000003129CPSF39988.235Octodon_degus
ENSDARG00000027649cpsf310086.812ENSONIG00000018812cpsf310086.812Oreochromis_niloticus
ENSDARG00000027649cpsf38186.501ENSOANG00000008577CPSF39986.501Ornithorhynchus_anatinus
ENSDARG00000027649cpsf39889.118ENSOCUG00000003728CPSF39989.118Oryctolagus_cuniculus
ENSDARG00000027649cpsf310085.072ENSORLG00000018854cpsf310085.072Oryzias_latipes
ENSDARG00000027649cpsf310084.928ENSORLG00020013331cpsf310084.928Oryzias_latipes_hni
ENSDARG00000027649cpsf310085.072ENSORLG00015011017cpsf310085.072Oryzias_latipes_hsok
ENSDARG00000027649cpsf310085.217ENSOMEG00000010647cpsf39685.217Oryzias_melastigma
ENSDARG00000027649cpsf39878.824ENSOGAG00000001680CPSF39978.824Otolemur_garnettii
ENSDARG00000027649cpsf39889.118ENSOARG00000015073CPSF39989.118Ovis_aries
ENSDARG00000027649cpsf39888.971ENSPPAG00000042457CPSF39198.280Pan_paniscus
ENSDARG00000027649cpsf39889.118ENSPPRG00000016790CPSF39989.118Panthera_pardus
ENSDARG00000027649cpsf39889.249ENSPTIG00000003920CPSF39989.249Panthera_tigris_altaica
ENSDARG00000027649cpsf39888.971ENSPTRG00000011638CPSF39198.280Pan_troglodytes
ENSDARG00000027649cpsf39888.824ENSPANG00000016798CPSF39495.417Papio_anubis
ENSDARG00000027649cpsf310090.580ENSPKIG00000023646cpsf310090.580Paramormyrops_kingsleyae
ENSDARG00000027649cpsf39887.372ENSPSIG00000016144CPSF39987.372Pelodiscus_sinensis
ENSDARG00000027649cpsf37890.792ENSPMGG00000006141-9583.113Periophthalmus_magnuspinnatus
ENSDARG00000027649cpsf35981.728ENSPMGG00000015311CPSF310081.728Periophthalmus_magnuspinnatus
ENSDARG00000027649cpsf39888.971ENSPEMG00000017668Cpsf39988.971Peromyscus_maniculatus_bairdii
ENSDARG00000027649cpsf37989.541ENSPMAG00000004841cpsf310089.541Petromyzon_marinus
ENSDARG00000027649cpsf39688.438ENSPCIG00000009823CPSF39888.804Phascolarctos_cinereus
ENSDARG00000027649cpsf310086.812ENSPFOG00000015922cpsf310086.812Poecilia_formosa
ENSDARG00000027649cpsf310089.420ENSPFOG00000010418-10089.420Poecilia_formosa
ENSDARG00000027649cpsf35983.457ENSPLAG00000021300-10083.457Poecilia_latipinna
ENSDARG00000027649cpsf310086.812ENSPLAG00000000882cpsf310086.812Poecilia_latipinna
ENSDARG00000027649cpsf310086.957ENSPMEG00000018309cpsf310086.957Poecilia_mexicana
ENSDARG00000027649cpsf310083.768ENSPREG00000004482CPSF310083.768Poecilia_reticulata
ENSDARG00000027649cpsf39184.579ENSPREG00000014875cpsf310078.696Poecilia_reticulata
ENSDARG00000027649cpsf39884.706ENSPPYG00000012666CPSF39984.706Pongo_abelii
ENSDARG00000027649cpsf38566.478ENSPCAG00000015042CPSF39066.478Procavia_capensis
ENSDARG00000027649cpsf38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSDARG00000027649cpsf39888.954ENSPVAG00000005324CPSF39988.954Pteropus_vampyrus
ENSDARG00000027649cpsf310086.812ENSPNYG00000004405cpsf310086.812Pundamilia_nyererei
ENSDARG00000027649cpsf37892.818ENSPNYG00000021047CPSF39285.075Pundamilia_nyererei
ENSDARG00000027649cpsf310091.739ENSPNAG00000023060cpsf310091.739Pygocentrus_nattereri
ENSDARG00000027649cpsf39888.660ENSRNOG00000052418Cpsf39988.660Rattus_norvegicus
ENSDARG00000027649cpsf39883.971ENSRBIG00000041615CPSF39984.985Rhinopithecus_bieti
ENSDARG00000027649cpsf39888.971ENSRROG00000033792CPSF39988.971Rhinopithecus_roxellana
ENSDARG00000027649cpsf39540.132YLR277CYSH19740.132Saccharomyces_cerevisiae
ENSDARG00000027649cpsf39685.586ENSSBOG00000027263CPSF39785.586Saimiri_boliviensis_boliviensis
ENSDARG00000027649cpsf39888.382ENSSHAG00000007024CPSF39988.382Sarcophilus_harrisii
ENSDARG00000027649cpsf310090.435ENSSFOG00015002108cpsf310090.435Scleropages_formosus
ENSDARG00000027649cpsf39589.650ENSSMAG00000020534CPSF39789.650Scophthalmus_maximus
ENSDARG00000027649cpsf310086.957ENSSDUG00000002828cpsf39786.957Seriola_dumerili
ENSDARG00000027649cpsf310089.710ENSSDUG00000018498CPSF310089.710Seriola_dumerili
ENSDARG00000027649cpsf310089.710ENSSLDG00000005234CPSF310089.710Seriola_lalandi_dorsalis
ENSDARG00000027649cpsf310086.957ENSSLDG00000008469cpsf39987.558Seriola_lalandi_dorsalis
ENSDARG00000027649cpsf39085.122ENSSARG00000005186CPSF39085.122Sorex_araneus
ENSDARG00000027649cpsf39686.119ENSSPUG00000015525CPSF39786.119Sphenodon_punctatus
ENSDARG00000027649cpsf310087.101ENSSPAG00000018579cpsf310087.101Stegastes_partitus
ENSDARG00000027649cpsf310089.565ENSSPAG00000002906CPSF310089.565Stegastes_partitus
ENSDARG00000027649cpsf39889.118ENSSSCG00000020799CPSF39989.118Sus_scrofa
ENSDARG00000027649cpsf39888.235ENSTGUG00000013016CPSF39988.235Taeniopygia_guttata
ENSDARG00000027649cpsf39985.756ENSTRUG00000007030cpsf39885.756Takifugu_rubripes
ENSDARG00000027649cpsf35974.631ENSTRUG00000013905CPSF310074.631Takifugu_rubripes
ENSDARG00000027649cpsf38491.713ENSTBEG00000002707CPSF38491.713Tupaia_belangeri
ENSDARG00000027649cpsf38674.939ENSTTRG00000000861CPSF38774.939Tursiops_truncatus
ENSDARG00000027649cpsf39590.061ENSUAMG00000007535CPSF39490.061Ursus_americanus
ENSDARG00000027649cpsf39388.700ENSUMAG00000003676CPSF39988.700Ursus_maritimus
ENSDARG00000027649cpsf39288.644ENSVPAG00000008041CPSF310088.644Vicugna_pacos
ENSDARG00000027649cpsf39889.118ENSVVUG00000002194CPSF39989.118Vulpes_vulpes
ENSDARG00000027649cpsf39985.631ENSXETG00000008263cpsf39985.631Xenopus_tropicalis
ENSDARG00000027649cpsf310086.812ENSXCOG00000019695cpsf310086.812Xiphophorus_couchianus
ENSDARG00000027649cpsf35481.989ENSXCOG00000000957-8781.989Xiphophorus_couchianus
ENSDARG00000027649cpsf310086.812ENSXMAG00000009784cpsf310086.812Xiphophorus_maculatus
ENSDARG00000027649cpsf310089.855ENSXMAG00000027291CPSF310089.855Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding21873635.IBAFunction
GO:0004521endoribonuclease activity21873635.IBAFunction
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21873635.IBAComponent
GO:0006378mRNA polyadenylation21873635.IBAProcess
GO:0006398mRNA 3'-end processing by stem-loop binding and cleavage21873635.IBAProcess
GO:00084095'-3' exonuclease activity21873635.IBAFunction

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