EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000027734 (Gene tree)
Gene ID: 436883
Gene Symbol: srsf5b
Alias: sfrs5b|wu:fe15e05|zgc:113907|zgc:92278
Full Name: serine/arginine-rich splicing factor 5b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 14861 bases
Position: chr20:28869969-28884829
Accession: ZDB-GENE-040718-354
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000122656	RRM_1	PF00076.22	2.7e-32	1	2
ENSDARP00000122656	RRM_1	PF00076.22	2.7e-32	2	2
ENSDARP00000123286	RRM_1	PF00076.22	7.5e-18	1	1
ENSDARP00000115788	RRM_1	PF00076.22	1.1e-17	1	1
ENSDARP00000069997	RRM_1	PF00076.22	1.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134564	-	2640	-	ENSDARP00000122656	285 (aa)	-	Q6DHJ0
ENSDART00000023580	-	559	-	-	- (aa)	-	-
ENSDART00000075515	-	1707	XM_005160668	ENSDARP00000069997	164 (aa)	XP_005160725	Q4V988
ENSDART00000132127	-	835	-	ENSDARP00000115788	158 (aa)	-	Q5SPH1
ENSDART00000135506	-	715	-	ENSDARP00000123286	138 (aa)	-	Q5SPH2

Gene Model

Click here to download ENSDARG00000027734's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000027734's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000027734	srsf5b	88	48.462	ENSDARG00000057691	srsf1a	88	48.837
ENSDARG00000027734	srsf5b	54	46.341	ENSDARG00000100815	srsf3a	53	47.222
ENSDARG00000027734	srsf5b	88	56.800	ENSDARG00000105293	srsf4	64	67.647
ENSDARG00000027734	srsf5b	87	55.556	ENSDARG00000016783	srsf6b	73	66.667
ENSDARG00000027734	srsf5b	60	40.223	ENSDARG00000008097	srsf9	69	43.182
ENSDARG00000027734	srsf5b	54	45.122	ENSDARG00000059360	srsf3b	84	41.284
ENSDARG00000027734	srsf5b	88	49.206	ENSDARG00000017843	srsf1b	65	51.190
ENSDARG00000027734	srsf5b	54	46.341	ENSDARG00000025397	srsf3a	53	47.222
ENSDARG00000027734	srsf5b	91	71.318	ENSDARG00000029818	srsf5a	96	71.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000027734	srsf5b	91	82.540	ENSG00000100650	SRSF5	99	79.365	Homo_sapiens
ENSDARG00000027734	srsf5b	90	93.750	ENSAPOG00000008642	srsf5b	64	94.054	Acanthochromis_polyacanthus
ENSDARG00000027734	srsf5b	90	82.400	ENSAMEG00000014574	SRSF5	66	82.418	Ailuropoda_melanoleuca
ENSDARG00000027734	srsf5b	92	93.182	ENSACIG00000010742	srsf5b	83	93.182	Amphilophus_citrinellus
ENSDARG00000027734	srsf5b	90	93.750	ENSAOCG00000005719	srsf5b	64	94.054	Amphiprion_ocellaris
ENSDARG00000027734	srsf5b	90	93.750	ENSAPEG00000007830	srsf5b	64	94.054	Amphiprion_percula
ENSDARG00000027734	srsf5b	90	93.750	ENSATEG00000019112	srsf5b	63	92.973	Anabas_testudineus
ENSDARG00000027734	srsf5b	86	78.814	ENSAPLG00000014681	SRSF5	67	81.868	Anas_platyrhynchos
ENSDARG00000027734	srsf5b	90	82.540	ENSACAG00000005143	SRSF5	67	83.516	Anolis_carolinensis
ENSDARG00000027734	srsf5b	90	82.400	ENSANAG00000027977	-	92	78.462	Aotus_nancymaae
ENSDARG00000027734	srsf5b	91	80.159	ENSANAG00000037529	-	95	76.984	Aotus_nancymaae
ENSDARG00000027734	srsf5b	90	93.750	ENSACLG00000026424	srsf5b	63	94.054	Astatotilapia_calliptera
ENSDARG00000027734	srsf5b	90	99.194	ENSAMXG00000011932	srsf5b	99	97.279	Astyanax_mexicanus
ENSDARG00000027734	srsf5b	90	82.400	ENSBTAG00000011596	SRSF5	66	82.418	Bos_taurus
ENSDARG00000027734	srsf5b	90	82.400	ENSCJAG00000014884	SRSF5	92	78.462	Callithrix_jacchus
ENSDARG00000027734	srsf5b	90	82.400	ENSCAFG00000016589	SRSF5	66	82.418	Canis_familiaris
ENSDARG00000027734	srsf5b	90	82.400	ENSCAFG00020005661	SRSF5	66	82.418	Canis_lupus_dingo
ENSDARG00000027734	srsf5b	90	82.400	ENSCHIG00000016794	SRSF5	65	82.418	Capra_hircus
ENSDARG00000027734	srsf5b	90	82.400	ENSTSYG00000007786	SRSF5	92	78.462	Carlito_syrichta
ENSDARG00000027734	srsf5b	90	82.400	ENSCAPG00000008801	SRSF5	65	82.418	Cavia_aperea
ENSDARG00000027734	srsf5b	90	82.400	ENSCPOG00000039926	SRSF5	76	66.667	Cavia_porcellus
ENSDARG00000027734	srsf5b	90	82.400	ENSCCAG00000029002	SRSF5	92	78.462	Cebus_capucinus
ENSDARG00000027734	srsf5b	90	82.400	ENSCATG00000045051	SRSF5	92	78.462	Cercocebus_atys
ENSDARG00000027734	srsf5b	90	82.400	ENSCLAG00000004755	SRSF5	66	82.418	Chinchilla_lanigera
ENSDARG00000027734	srsf5b	90	82.400	ENSCSAG00000013041	SRSF5	66	82.418	Chlorocebus_sabaeus
ENSDARG00000027734	srsf5b	90	82.400	ENSCPBG00000021653	SRSF5	67	82.967	Chrysemys_picta_bellii
ENSDARG00000027734	srsf5b	90	82.400	ENSCANG00000030560	SRSF5	92	78.462	Colobus_angolensis_palliatus
ENSDARG00000027734	srsf5b	90	82.400	ENSCGRG00001015339	Srsf5	67	82.418	Cricetulus_griseus_chok1gshd
ENSDARG00000027734	srsf5b	90	82.400	ENSCGRG00000009833	Srsf5	67	82.418	Cricetulus_griseus_crigri
ENSDARG00000027734	srsf5b	90	89.231	ENSCSEG00000003801	srsf5b	64	91.444	Cynoglossus_semilaevis
ENSDARG00000027734	srsf5b	90	88.281	ENSCVAG00000017240	srsf5b	63	92.195	Cyprinodon_variegatus
ENSDARG00000027734	srsf5b	90	82.400	ENSDNOG00000006160	SRSF5	67	82.418	Dasypus_novemcinctus
ENSDARG00000027734	srsf5b	90	82.400	ENSDORG00000003989	Srsf5	67	82.418	Dipodomys_ordii
ENSDARG00000027734	srsf5b	90	73.387	ENSETEG00000020396	SRSF5	66	76.440	Echinops_telfairi
ENSDARG00000027734	srsf5b	94	59.542	ENSEBUG00000006229	srsf5b	68	67.403	Eptatretus_burgeri
ENSDARG00000027734	srsf5b	90	82.400	ENSEASG00005016615	SRSF5	66	82.418	Equus_asinus_asinus
ENSDARG00000027734	srsf5b	90	82.400	ENSECAG00000026873	SRSF5	92	78.462	Equus_caballus
ENSDARG00000027734	srsf5b	90	90.299	ENSELUG00000019852	srsf5b	97	82.317	Esox_lucius
ENSDARG00000027734	srsf5b	90	82.400	ENSFCAG00000008848	SRSF5	92	78.462	Felis_catus
ENSDARG00000027734	srsf5b	90	76.613	ENSFALG00000004979	SRSF5	67	82.873	Ficedula_albicollis
ENSDARG00000027734	srsf5b	90	82.400	ENSFDAG00000011562	SRSF5	67	82.418	Fukomys_damarensis
ENSDARG00000027734	srsf5b	90	87.500	ENSFHEG00000009476	srsf5b	60	94.054	Fundulus_heteroclitus
ENSDARG00000027734	srsf5b	91	85.401	ENSGMOG00000000595	srsf5b	97	77.130	Gadus_morhua
ENSDARG00000027734	srsf5b	90	75.806	ENSGALG00000009421	SRSF5	92	77.519	Gallus_gallus
ENSDARG00000027734	srsf5b	90	93.750	ENSGAFG00000002865	srsf5b	61	94.054	Gambusia_affinis
ENSDARG00000027734	srsf5b	93	78.014	ENSGACG00000007834	srsf5b	97	82.581	Gasterosteus_aculeatus
ENSDARG00000027734	srsf5b	90	82.400	ENSGAGG00000004447	SRSF5	67	82.967	Gopherus_agassizii
ENSDARG00000027734	srsf5b	90	82.400	ENSGGOG00000016462	SRSF5	92	78.462	Gorilla_gorilla
ENSDARG00000027734	srsf5b	90	93.750	ENSHBUG00000012462	srsf5b	93	93.750	Haplochromis_burtoni
ENSDARG00000027734	srsf5b	90	81.600	ENSHGLG00000010147	SRSF5	66	81.868	Heterocephalus_glaber_female
ENSDARG00000027734	srsf5b	90	81.600	ENSHGLG00100015328	SRSF5	66	81.868	Heterocephalus_glaber_male
ENSDARG00000027734	srsf5b	54	80.000	ENSHGLG00100000095	-	62	60.795	Heterocephalus_glaber_male
ENSDARG00000027734	srsf5b	90	81.818	ENSHCOG00000005592	srsf5b	65	86.243	Hippocampus_comes
ENSDARG00000027734	srsf5b	90	82.400	ENSSTOG00000020672	SRSF5	66	82.418	Ictidomys_tridecemlineatus
ENSDARG00000027734	srsf5b	90	82.400	ENSJJAG00000001688	Srsf5	66	82.418	Jaculus_jaculus
ENSDARG00000027734	srsf5b	90	95.238	ENSKMAG00000020486	srsf5b	97	91.034	Kryptolebias_marmoratus
ENSDARG00000027734	srsf5b	90	92.308	ENSLBEG00000013647	srsf5b	63	91.444	Labrus_bergylta
ENSDARG00000027734	srsf5b	90	82.400	ENSLACG00000005874	SRSF5	67	84.615	Latimeria_chalumnae
ENSDARG00000027734	srsf5b	90	84.615	ENSLOCG00000012438	srsf5b	69	87.097	Lepisosteus_oculatus
ENSDARG00000027734	srsf5b	90	81.600	ENSLAFG00000005260	SRSF5	66	81.868	Loxodonta_africana
ENSDARG00000027734	srsf5b	90	82.400	ENSMFAG00000002393	SRSF5	92	78.462	Macaca_fascicularis
ENSDARG00000027734	srsf5b	90	82.400	ENSMNEG00000030872	SRSF5	92	78.462	Macaca_nemestrina
ENSDARG00000027734	srsf5b	90	82.400	ENSMLEG00000030017	SRSF5	92	78.462	Mandrillus_leucophaeus
ENSDARG00000027734	srsf5b	90	93.750	ENSMAMG00000002673	srsf5b	63	93.514	Mastacembelus_armatus
ENSDARG00000027734	srsf5b	90	93.750	ENSMZEG00005003550	srsf5b	63	94.054	Maylandia_zebra
ENSDARG00000027734	srsf5b	62	64.706	ENSMGAG00000011835	SRSF5	96	60.619	Meleagris_gallopavo
ENSDARG00000027734	srsf5b	90	82.400	ENSMAUG00000009544	Srsf5	66	82.418	Mesocricetus_auratus
ENSDARG00000027734	srsf5b	90	82.400	ENSMICG00000037432	-	92	78.462	Microcebus_murinus
ENSDARG00000027734	srsf5b	54	91.892	ENSMICG00000046738	-	74	92.000	Microcebus_murinus
ENSDARG00000027734	srsf5b	90	82.400	ENSMOCG00000013134	Srsf5	66	82.418	Microtus_ochrogaster
ENSDARG00000027734	srsf5b	92	86.260	ENSMMOG00000000137	srsf5b	99	74.691	Mola_mola
ENSDARG00000027734	srsf5b	90	82.400	ENSMODG00000011362	SRSF5	67	82.967	Monodelphis_domestica
ENSDARG00000027734	srsf5b	90	93.023	ENSMALG00000021875	srsf5b	97	88.514	Monopterus_albus
ENSDARG00000027734	srsf5b	90	82.400	ENSMUSG00000021134	Srsf5	96	93.182	Mus_musculus
ENSDARG00000027734	srsf5b	90	82.400	MGP_PahariEiJ_G0029659	Srsf5	67	82.418	Mus_pahari
ENSDARG00000027734	srsf5b	90	82.400	ENSMPUG00000007458	SRSF5	66	82.418	Mustela_putorius_furo
ENSDARG00000027734	srsf5b	90	82.400	ENSMLUG00000011939	SRSF5	64	82.418	Myotis_lucifugus
ENSDARG00000027734	srsf5b	90	82.400	ENSNGAG00000010073	-	66	82.418	Nannospalax_galili
ENSDARG00000027734	srsf5b	90	92.308	ENSNBRG00000001285	srsf5b	64	93.048	Neolamprologus_brichardi
ENSDARG00000027734	srsf5b	90	82.400	ENSNLEG00000001615	SRSF5	92	78.462	Nomascus_leucogenys
ENSDARG00000027734	srsf5b	90	82.400	ENSOPRG00000008286	SRSF5	95	72.325	Ochotona_princeps
ENSDARG00000027734	srsf5b	90	80.000	ENSODEG00000000700	-	68	80.220	Octodon_degus
ENSDARG00000027734	srsf5b	90	82.400	ENSODEG00000013469	-	67	82.418	Octodon_degus
ENSDARG00000027734	srsf5b	90	93.750	ENSONIG00000005759	srsf5b	63	94.054	Oreochromis_niloticus
ENSDARG00000027734	srsf5b	90	75.200	ENSOANG00000013336	SRSF5	99	65.734	Ornithorhynchus_anatinus
ENSDARG00000027734	srsf5b	90	82.400	ENSOCUG00000009274	SRSF5	65	82.418	Oryctolagus_cuniculus
ENSDARG00000027734	srsf5b	90	85.385	ENSORLG00000029854	srsf5b	58	88.770	Oryzias_latipes
ENSDARG00000027734	srsf5b	90	87.692	ENSORLG00015001720	srsf5b	64	90.374	Oryzias_latipes_hsok
ENSDARG00000027734	srsf5b	90	82.400	ENSOGAG00000015122	SRSF5	66	82.418	Otolemur_garnettii
ENSDARG00000027734	srsf5b	90	82.400	ENSPPAG00000029921	SRSF5	92	78.462	Pan_paniscus
ENSDARG00000027734	srsf5b	90	82.400	ENSPPRG00000012903	SRSF5	92	78.462	Panthera_pardus
ENSDARG00000027734	srsf5b	90	82.400	ENSPTIG00000018589	SRSF5	92	78.462	Panthera_tigris_altaica
ENSDARG00000027734	srsf5b	90	82.400	ENSPTRG00000006488	SRSF5	92	78.462	Pan_troglodytes
ENSDARG00000027734	srsf5b	90	82.400	ENSPANG00000021091	SRSF5	92	78.462	Papio_anubis
ENSDARG00000027734	srsf5b	90	82.400	ENSPSIG00000012522	SRSF5	68	82.967	Pelodiscus_sinensis
ENSDARG00000027734	srsf5b	92	93.893	ENSPMGG00000021646	srsf5b	100	89.362	Periophthalmus_magnuspinnatus
ENSDARG00000027734	srsf5b	90	82.400	ENSPEMG00000020173	Srsf5	67	82.418	Peromyscus_maniculatus_bairdii
ENSDARG00000027734	srsf5b	90	56.204	ENSPMAG00000007790	srsf5b	67	62.694	Petromyzon_marinus
ENSDARG00000027734	srsf5b	90	82.400	ENSPCIG00000011877	SRSF5	67	82.967	Phascolarctos_cinereus
ENSDARG00000027734	srsf5b	90	93.750	ENSPFOG00000017700	srsf5b	61	94.595	Poecilia_formosa
ENSDARG00000027734	srsf5b	90	93.023	ENSPLAG00000006480	srsf5b	62	94.086	Poecilia_latipinna
ENSDARG00000027734	srsf5b	90	93.750	ENSPMEG00000012751	srsf5b	97	90.476	Poecilia_mexicana
ENSDARG00000027734	srsf5b	90	93.750	ENSPREG00000010381	srsf5b	61	94.054	Poecilia_reticulata
ENSDARG00000027734	srsf5b	90	82.400	ENSPPYG00000005945	SRSF5	66	82.418	Pongo_abelii
ENSDARG00000027734	srsf5b	90	81.600	ENSPCAG00000004405	SRSF5	100	81.208	Procavia_capensis
ENSDARG00000027734	srsf5b	90	82.400	ENSPCOG00000014442	SRSF5	92	78.462	Propithecus_coquereli
ENSDARG00000027734	srsf5b	92	93.893	ENSPNYG00000002669	srsf5b	96	93.893	Pundamilia_nyererei
ENSDARG00000027734	srsf5b	90	98.387	ENSPNAG00000011262	srsf5b	99	96.599	Pygocentrus_nattereri
ENSDARG00000027734	srsf5b	90	82.400	ENSRNOG00000005513	Srsf5	67	82.418	Rattus_norvegicus
ENSDARG00000027734	srsf5b	90	82.400	ENSRBIG00000013003	SRSF5	92	78.462	Rhinopithecus_bieti
ENSDARG00000027734	srsf5b	90	82.400	ENSRROG00000043407	SRSF5	92	78.462	Rhinopithecus_roxellana
ENSDARG00000027734	srsf5b	90	82.400	ENSSBOG00000030784	SRSF5	92	78.462	Saimiri_boliviensis_boliviensis
ENSDARG00000027734	srsf5b	90	82.400	ENSSHAG00000002871	SRSF5	67	82.967	Sarcophilus_harrisii
ENSDARG00000027734	srsf5b	90	83.688	ENSSMAG00000019728	srsf5b	61	87.374	Scophthalmus_maximus
ENSDARG00000027734	srsf5b	90	93.750	ENSSDUG00000005766	srsf5b	65	93.514	Seriola_dumerili
ENSDARG00000027734	srsf5b	90	93.750	ENSSLDG00000023255	srsf5b	97	91.156	Seriola_lalandi_dorsalis
ENSDARG00000027734	srsf5b	51	90.141	ENSSARG00000001059	SRSF5	66	69.780	Sorex_araneus
ENSDARG00000027734	srsf5b	90	78.626	ENSSPUG00000002464	SRSF5	93	77.941	Sphenodon_punctatus
ENSDARG00000027734	srsf5b	90	93.750	ENSSPAG00000015325	srsf5b	64	93.514	Stegastes_partitus
ENSDARG00000027734	srsf5b	90	82.400	ENSSSCG00000032583	SRSF5	66	82.418	Sus_scrofa
ENSDARG00000027734	srsf5b	90	76.613	ENSTGUG00000011425	SRSF5	67	82.873	Taeniopygia_guttata
ENSDARG00000027734	srsf5b	90	85.714	ENSTRUG00000017811	srsf5b	59	92.350	Takifugu_rubripes
ENSDARG00000027734	srsf5b	90	83.333	ENSTNIG00000016411	srsf5b	66	91.257	Tetraodon_nigroviridis
ENSDARG00000027734	srsf5b	90	82.400	ENSTBEG00000001972	SRSF5	65	80.220	Tupaia_belangeri
ENSDARG00000027734	srsf5b	89	82.258	ENSTTRG00000003318	SRSF5	65	82.320	Tursiops_truncatus
ENSDARG00000027734	srsf5b	90	82.400	ENSUAMG00000014184	SRSF5	66	82.418	Ursus_americanus
ENSDARG00000027734	srsf5b	90	82.400	ENSUMAG00000009827	SRSF5	72	82.000	Ursus_maritimus
ENSDARG00000027734	srsf5b	90	82.400	ENSVPAG00000006448	SRSF5	66	82.418	Vicugna_pacos
ENSDARG00000027734	srsf5b	90	82.400	ENSVVUG00000003790	SRSF5	66	82.418	Vulpes_vulpes
ENSDARG00000027734	srsf5b	90	79.839	ENSXETG00000002211	srsf5	67	83.425	Xenopus_tropicalis
ENSDARG00000027734	srsf5b	90	93.023	ENSXCOG00000001570	srsf5b	63	94.086	Xiphophorus_couchianus
ENSDARG00000027734	srsf5b	90	93.023	ENSXMAG00000026416	srsf5b	97	88.514	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process