EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000027803 (Gene tree)
Gene ID: 394096
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6545 bases
Position: chr15:1891689-1898233
Accession: ZDB-GENE-040426-1116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000123843	SBDS	PF01172.18	2.3e-34	1	1
ENSDARP00000125007	SBDS	PF01172.18	2.5e-34	1	1
ENSDARP00000123843	SBDS_C	PF09377.10	3.2e-40	1	1
ENSDARP00000125007	SBDS_C	PF09377.10	1.7e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000150104	-	1461	-	ENSDARP00000123843	250 (aa)	-	F8W4Y5
ENSDART00000149631	-	974	-	ENSDARP00000125007	257 (aa)	-	F8W5Q9

Gene Model

Click here to download ENSDARG00000027803's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000027803's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000027803	sbds	100	84.000	ENSG00000126524	SBDS	97	87.952	Homo_sapiens
ENSDARG00000027803	sbds	99	89.157	ENSAPOG00000014285	sbds	100	89.157	Acanthochromis_polyacanthus
ENSDARG00000027803	sbds	100	84.400	ENSAMEG00000018167	SBDS	100	84.400	Ailuropoda_melanoleuca
ENSDARG00000027803	sbds	99	87.302	ENSACIG00000007308	sbds	100	87.302	Amphilophus_citrinellus
ENSDARG00000027803	sbds	99	89.960	ENSAOCG00000016770	sbds	100	89.960	Amphiprion_ocellaris
ENSDARG00000027803	sbds	99	89.558	ENSAPEG00000015897	sbds	100	89.558	Amphiprion_percula
ENSDARG00000027803	sbds	99	89.558	ENSATEG00000006901	sbds	100	89.558	Anabas_testudineus
ENSDARG00000027803	sbds	83	83.092	ENSANAG00000037501	-	100	83.092	Aotus_nancymaae
ENSDARG00000027803	sbds	92	77.922	ENSANAG00000024342	-	97	77.922	Aotus_nancymaae
ENSDARG00000027803	sbds	99	89.157	ENSACLG00000018750	sbds	100	89.157	Astatotilapia_calliptera
ENSDARG00000027803	sbds	100	91.200	ENSAMXG00000005361	sbds	100	91.200	Astyanax_mexicanus
ENSDARG00000027803	sbds	100	84.000	ENSBTAG00000004051	SBDS	100	84.000	Bos_taurus
ENSDARG00000027803	sbds	98	58.537	WBGene00021063	sbds-1	97	58.537	Caenorhabditis_elegans
ENSDARG00000027803	sbds	100	84.000	ENSCJAG00000041007	SBDS	100	84.000	Callithrix_jacchus
ENSDARG00000027803	sbds	100	82.540	ENSCAFG00000010797	SBDS	100	82.540	Canis_familiaris
ENSDARG00000027803	sbds	100	84.400	ENSCAFG00020005357	SBDS	100	84.400	Canis_lupus_dingo
ENSDARG00000027803	sbds	100	84.000	ENSCHIG00000026854	SBDS	100	84.000	Capra_hircus
ENSDARG00000027803	sbds	100	84.000	ENSTSYG00000033822	SBDS	100	84.000	Carlito_syrichta
ENSDARG00000027803	sbds	66	82.927	ENSCAPG00000006634	SBDS	100	82.927	Cavia_aperea
ENSDARG00000027803	sbds	100	84.800	ENSCPOG00000036143	SBDS	100	84.800	Cavia_porcellus
ENSDARG00000027803	sbds	100	84.000	ENSCCAG00000020671	SBDS	100	84.000	Cebus_capucinus
ENSDARG00000027803	sbds	100	84.000	ENSCATG00000039026	SBDS	100	84.000	Cercocebus_atys
ENSDARG00000027803	sbds	100	85.200	ENSCLAG00000005721	-	100	85.200	Chinchilla_lanigera
ENSDARG00000027803	sbds	99	60.887	ENSCLAG00000002113	-	99	60.887	Chinchilla_lanigera
ENSDARG00000027803	sbds	100	84.000	ENSCSAG00000018275	SBDS	100	84.000	Chlorocebus_sabaeus
ENSDARG00000027803	sbds	100	79.600	ENSCHOG00000003795	SBDS	100	79.600	Choloepus_hoffmanni
ENSDARG00000027803	sbds	100	86.800	ENSCPBG00000014893	SBDS	100	86.800	Chrysemys_picta_bellii
ENSDARG00000027803	sbds	99	67.742	ENSCSAVG00000011811	-	99	67.742	Ciona_savignyi
ENSDARG00000027803	sbds	100	84.000	ENSCANG00000032368	SBDS	100	84.000	Colobus_angolensis_palliatus
ENSDARG00000027803	sbds	66	82.317	ENSCGRG00001019886	Sbds	100	82.317	Cricetulus_griseus_chok1gshd
ENSDARG00000027803	sbds	83	83.575	ENSCGRG00000009211	Sbds	100	83.575	Cricetulus_griseus_crigri
ENSDARG00000027803	sbds	99	88.755	ENSCSEG00000005798	sbds	100	88.755	Cynoglossus_semilaevis
ENSDARG00000027803	sbds	99	85.944	ENSCVAG00000001053	sbds	100	85.944	Cyprinodon_variegatus
ENSDARG00000027803	sbds	100	84.000	ENSDNOG00000041174	SBDS	100	84.000	Dasypus_novemcinctus
ENSDARG00000027803	sbds	100	84.000	ENSDORG00000026218	Sbds	100	84.000	Dipodomys_ordii
ENSDARG00000027803	sbds	91	61.966	FBgn0035714	CG8549	98	62.753	Drosophila_melanogaster
ENSDARG00000027803	sbds	93	57.940	ENSEBUG00000015780	sbds	100	57.940	Eptatretus_burgeri
ENSDARG00000027803	sbds	100	84.000	ENSEASG00005008821	SBDS	100	84.000	Equus_asinus_asinus
ENSDARG00000027803	sbds	100	84.000	ENSECAG00000008202	SBDS	100	84.000	Equus_caballus
ENSDARG00000027803	sbds	83	64.423	ENSEEUG00000004768	SBDS	100	64.423	Erinaceus_europaeus
ENSDARG00000027803	sbds	100	89.600	ENSELUG00000008382	sbds	100	89.600	Esox_lucius
ENSDARG00000027803	sbds	100	84.000	ENSFCAG00000022142	SBDS	100	84.000	Felis_catus
ENSDARG00000027803	sbds	100	87.200	ENSFALG00000013808	SBDS	100	87.200	Ficedula_albicollis
ENSDARG00000027803	sbds	100	84.800	ENSFDAG00000018947	-	100	84.800	Fukomys_damarensis
ENSDARG00000027803	sbds	99	83.534	ENSFHEG00000000708	sbds	100	83.534	Fundulus_heteroclitus
ENSDARG00000027803	sbds	100	86.400	ENSGMOG00000018356	sbds	99	86.400	Gadus_morhua
ENSDARG00000027803	sbds	100	87.600	ENSGALG00000027989	SBDS	100	87.600	Gallus_gallus
ENSDARG00000027803	sbds	92	82.174	ENSGAFG00000014204	sbds	100	82.174	Gambusia_affinis
ENSDARG00000027803	sbds	99	85.944	ENSGACG00000012697	sbds	100	85.944	Gasterosteus_aculeatus
ENSDARG00000027803	sbds	86	87.383	ENSGAGG00000022402	SBDS	100	87.383	Gopherus_agassizii
ENSDARG00000027803	sbds	96	65.145	ENSGGOG00000040023	-	92	65.145	Gorilla_gorilla
ENSDARG00000027803	sbds	99	89.157	ENSHBUG00000002660	sbds	100	89.157	Haplochromis_burtoni
ENSDARG00000027803	sbds	100	84.400	ENSHGLG00000009671	SBDS	100	84.400	Heterocephalus_glaber_female
ENSDARG00000027803	sbds	100	84.400	ENSHGLG00100011332	SBDS	100	84.400	Heterocephalus_glaber_male
ENSDARG00000027803	sbds	99	83.936	ENSHCOG00000018606	sbds	100	83.936	Hippocampus_comes
ENSDARG00000027803	sbds	100	92.400	ENSIPUG00000006536	sbds	100	92.400	Ictalurus_punctatus
ENSDARG00000027803	sbds	100	81.600	ENSJJAG00000012033	-	100	81.600	Jaculus_jaculus
ENSDARG00000027803	sbds	100	60.870	ENSJJAG00000003934	-	100	60.870	Jaculus_jaculus
ENSDARG00000027803	sbds	99	88.353	ENSKMAG00000018542	sbds	100	88.353	Kryptolebias_marmoratus
ENSDARG00000027803	sbds	99	86.747	ENSLBEG00000016687	sbds	100	86.747	Labrus_bergylta
ENSDARG00000027803	sbds	100	76.378	ENSLACG00000018916	SBDS	100	76.378	Latimeria_chalumnae
ENSDARG00000027803	sbds	100	92.400	ENSLOCG00000004073	sbds	100	92.400	Lepisosteus_oculatus
ENSDARG00000027803	sbds	100	84.400	ENSLAFG00000008763	SBDS	100	84.400	Loxodonta_africana
ENSDARG00000027803	sbds	100	84.000	ENSMFAG00000032620	SBDS	100	84.000	Macaca_fascicularis
ENSDARG00000027803	sbds	100	84.000	ENSMMUG00000045653	SBDS	100	84.000	Macaca_mulatta
ENSDARG00000027803	sbds	100	84.000	ENSMNEG00000031523	SBDS	100	84.000	Macaca_nemestrina
ENSDARG00000027803	sbds	100	66.535	ENSMLEG00000036826	SBDS	100	66.535	Mandrillus_leucophaeus
ENSDARG00000027803	sbds	99	88.353	ENSMAMG00000016062	sbds	100	88.353	Mastacembelus_armatus
ENSDARG00000027803	sbds	99	89.157	ENSMZEG00005024385	sbds	100	89.157	Maylandia_zebra
ENSDARG00000027803	sbds	100	87.600	ENSMGAG00000002119	SBDS	100	87.600	Meleagris_gallopavo
ENSDARG00000027803	sbds	99	69.478	ENSMAUG00000022214	-	100	69.478	Mesocricetus_auratus
ENSDARG00000027803	sbds	100	84.000	ENSMICG00000014366	SBDS	100	84.000	Microcebus_murinus
ENSDARG00000027803	sbds	100	84.800	ENSMOCG00000011739	Sbds	100	84.800	Microtus_ochrogaster
ENSDARG00000027803	sbds	99	81.200	ENSMMOG00000005061	sbds	100	81.200	Mola_mola
ENSDARG00000027803	sbds	100	85.200	ENSMODG00000006644	SBDS	100	85.200	Monodelphis_domestica
ENSDARG00000027803	sbds	99	85.141	ENSMALG00000010219	sbds	100	85.141	Monopterus_albus
ENSDARG00000027803	sbds	100	84.800	MGP_CAROLIEiJ_G0027800	Sbds	98	92.857	Mus_caroli
ENSDARG00000027803	sbds	100	84.400	ENSMUSG00000025337	Sbds	98	92.857	Mus_musculus
ENSDARG00000027803	sbds	100	84.800	MGP_PahariEiJ_G0024384	Sbds	98	92.857	Mus_pahari
ENSDARG00000027803	sbds	100	84.400	MGP_SPRETEiJ_G0028798	Sbds	98	92.857	Mus_spretus
ENSDARG00000027803	sbds	67	84.524	ENSMPUG00000016192	SBDS	97	84.524	Mustela_putorius_furo
ENSDARG00000027803	sbds	73	80.769	ENSMLUG00000013575	SBDS	100	80.769	Myotis_lucifugus
ENSDARG00000027803	sbds	100	84.800	ENSNGAG00000012093	Sbds	100	84.800	Nannospalax_galili
ENSDARG00000027803	sbds	99	89.157	ENSNBRG00000017027	sbds	100	89.157	Neolamprologus_brichardi
ENSDARG00000027803	sbds	100	84.000	ENSNLEG00000013288	SBDS	100	84.000	Nomascus_leucogenys
ENSDARG00000027803	sbds	100	83.600	ENSOPRG00000008721	SBDS	100	83.600	Ochotona_princeps
ENSDARG00000027803	sbds	99	65.060	ENSODEG00000000137	-	84	68.273	Octodon_degus
ENSDARG00000027803	sbds	99	66.667	ENSODEG00000001116	-	99	66.667	Octodon_degus
ENSDARG00000027803	sbds	100	76.400	ENSODEG00000019253	-	84	76.400	Octodon_degus
ENSDARG00000027803	sbds	99	89.157	ENSONIG00000005874	sbds	100	89.157	Oreochromis_niloticus
ENSDARG00000027803	sbds	83	83.575	ENSOANG00000007674	-	100	83.575	Ornithorhynchus_anatinus
ENSDARG00000027803	sbds	100	85.200	ENSOCUG00000003170	SBDS	100	85.200	Oryctolagus_cuniculus
ENSDARG00000027803	sbds	99	83.133	ENSORLG00000023489	sbds	100	83.133	Oryzias_latipes
ENSDARG00000027803	sbds	99	82.731	ENSORLG00020019282	sbds	100	82.731	Oryzias_latipes_hni
ENSDARG00000027803	sbds	99	82.731	ENSORLG00015008005	sbds	100	82.731	Oryzias_latipes_hsok
ENSDARG00000027803	sbds	99	83.534	ENSOMEG00000022747	sbds	100	83.534	Oryzias_melastigma
ENSDARG00000027803	sbds	100	72.400	ENSOGAG00000015036	-	100	72.400	Otolemur_garnettii
ENSDARG00000027803	sbds	100	84.400	ENSOGAG00000009011	-	100	84.400	Otolemur_garnettii
ENSDARG00000027803	sbds	100	84.000	ENSOARG00000010609	SBDS	100	84.000	Ovis_aries
ENSDARG00000027803	sbds	100	83.200	ENSPPAG00000043889	-	100	83.200	Pan_paniscus
ENSDARG00000027803	sbds	100	84.000	ENSPPRG00000002307	SBDS	100	84.000	Panthera_pardus
ENSDARG00000027803	sbds	100	84.000	ENSPTIG00000021308	SBDS	100	84.000	Panthera_tigris_altaica
ENSDARG00000027803	sbds	87	81.567	ENSPTRG00000048174	-	96	81.567	Pan_troglodytes
ENSDARG00000027803	sbds	100	84.000	ENSPTRG00000019254	SBDS	100	84.000	Pan_troglodytes
ENSDARG00000027803	sbds	100	71.200	ENSPTRG00000047744	-	100	71.200	Pan_troglodytes
ENSDARG00000027803	sbds	100	71.200	ENSPTRG00000050835	-	100	71.200	Pan_troglodytes
ENSDARG00000027803	sbds	100	84.000	ENSPANG00000004078	SBDS	100	84.000	Papio_anubis
ENSDARG00000027803	sbds	100	91.600	ENSPKIG00000006489	sbds	100	91.600	Paramormyrops_kingsleyae
ENSDARG00000027803	sbds	83	87.019	ENSPSIG00000014603	SBDS	100	87.019	Pelodiscus_sinensis
ENSDARG00000027803	sbds	99	87.952	ENSPMGG00000004246	sbds	100	87.952	Periophthalmus_magnuspinnatus
ENSDARG00000027803	sbds	100	84.800	ENSPEMG00000008728	Sbds	100	84.800	Peromyscus_maniculatus_bairdii
ENSDARG00000027803	sbds	100	85.200	ENSPCIG00000029718	SBDS	100	85.200	Phascolarctos_cinereus
ENSDARG00000027803	sbds	99	85.141	ENSPFOG00000015837	sbds	100	85.141	Poecilia_formosa
ENSDARG00000027803	sbds	99	85.542	ENSPLAG00000003641	sbds	100	85.542	Poecilia_latipinna
ENSDARG00000027803	sbds	99	85.141	ENSPMEG00000019483	sbds	100	85.141	Poecilia_mexicana
ENSDARG00000027803	sbds	99	85.141	ENSPREG00000018758	sbds	100	85.141	Poecilia_reticulata
ENSDARG00000027803	sbds	100	84.000	ENSPPYG00000017513	SBDS	100	84.000	Pongo_abelii
ENSDARG00000027803	sbds	100	83.600	ENSPCOG00000021098	SBDS	100	83.600	Propithecus_coquereli
ENSDARG00000027803	sbds	100	84.400	ENSPVAG00000009369	SBDS	100	84.400	Pteropus_vampyrus
ENSDARG00000027803	sbds	99	88.755	ENSPNYG00000022403	sbds	100	88.755	Pundamilia_nyererei
ENSDARG00000027803	sbds	100	92.400	ENSPNAG00000001120	sbds	100	92.400	Pygocentrus_nattereri
ENSDARG00000027803	sbds	100	84.800	ENSRNOG00000000888	Sbds	100	84.800	Rattus_norvegicus
ENSDARG00000027803	sbds	100	84.000	ENSRBIG00000035557	SBDS	100	84.000	Rhinopithecus_bieti
ENSDARG00000027803	sbds	100	68.400	ENSRROG00000041986	-	100	68.400	Rhinopithecus_roxellana
ENSDARG00000027803	sbds	100	84.000	ENSRROG00000040842	-	100	84.000	Rhinopithecus_roxellana
ENSDARG00000027803	sbds	96	45.528	YLR022C	-	96	45.528	Saccharomyces_cerevisiae
ENSDARG00000027803	sbds	93	81.897	ENSSBOG00000022460	SBDS	100	81.897	Saimiri_boliviensis_boliviensis
ENSDARG00000027803	sbds	100	72.800	ENSSHAG00000010263	SBDS	100	72.800	Sarcophilus_harrisii
ENSDARG00000027803	sbds	100	93.200	ENSSFOG00015001108	sbds	100	93.200	Scleropages_formosus
ENSDARG00000027803	sbds	99	87.149	ENSSMAG00000020506	sbds	100	87.149	Scophthalmus_maximus
ENSDARG00000027803	sbds	99	89.157	ENSSDUG00000001528	sbds	100	89.157	Seriola_dumerili
ENSDARG00000027803	sbds	99	89.157	ENSSLDG00000003659	sbds	100	89.157	Seriola_lalandi_dorsalis
ENSDARG00000027803	sbds	61	88.235	ENSSARG00000013132	-	100	88.235	Sorex_araneus
ENSDARG00000027803	sbds	74	89.535	ENSSARG00000001899	-	73	89.535	Sorex_araneus
ENSDARG00000027803	sbds	100	84.800	ENSSPUG00000002699	SBDS	100	84.800	Sphenodon_punctatus
ENSDARG00000027803	sbds	99	89.558	ENSSPAG00000016419	sbds	100	82.400	Stegastes_partitus
ENSDARG00000027803	sbds	100	84.000	ENSSSCG00000007732	SBDS	100	84.000	Sus_scrofa
ENSDARG00000027803	sbds	66	86.667	ENSTGUG00000003426	SBDS	99	86.667	Taeniopygia_guttata
ENSDARG00000027803	sbds	99	87.550	ENSTRUG00000021443	sbds	100	87.550	Takifugu_rubripes
ENSDARG00000027803	sbds	99	87.149	ENSTNIG00000019000	sbds	100	87.149	Tetraodon_nigroviridis
ENSDARG00000027803	sbds	83	71.154	ENSTBEG00000001178	SBDS	100	71.154	Tupaia_belangeri
ENSDARG00000027803	sbds	100	66.400	ENSTTRG00000003921	SBDS	100	66.400	Tursiops_truncatus
ENSDARG00000027803	sbds	100	84.400	ENSUAMG00000001326	SBDS	100	84.400	Ursus_americanus
ENSDARG00000027803	sbds	100	84.400	ENSUMAG00000015353	SBDS	100	84.400	Ursus_maritimus
ENSDARG00000027803	sbds	100	84.400	ENSVVUG00000016478	SBDS	100	84.400	Vulpes_vulpes
ENSDARG00000027803	sbds	100	88.400	ENSXETG00000010093	sbds	100	88.400	Xenopus_tropicalis
ENSDARG00000027803	sbds	99	77.108	ENSXCOG00000010639	sbds	100	77.108	Xiphophorus_couchianus
ENSDARG00000027803	sbds	99	85.944	ENSXMAG00000006065	sbds	100	85.944	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002573	myeloid leukocyte differentiation	22872088.	IMP	Process
GO:0030851	granulocyte differentiation	18356737.	IMP	Process
GO:0031017	exocrine pancreas development	18356737.22872088.	IMP	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042254	ribosome biogenesis	22872088.	IMP	Process
GO:0042256	mature ribosome assembly	-	IEA	Process