EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000027938 (Gene tree)
Gene ID: 393106
Gene Symbol: rad18
Alias: zgc:55577
Full Name: RAD18 E3 ubiquitin protein ligase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 78726 bases
Position: chr6:41808673-41887398
Accession: ZDB-GENE-040426-745
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000035402	SAP	PF02037.27	9.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000038163	-	1699	XM_009302542	ENSDARP00000035402	426 (aa)	XP_009300817	F1QTJ5
ENSDART00000143439	-	691	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000027938's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000027938's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000027938	rad18	82	46.133	ENSG00000070950	RAD18	98	59.551	Homo_sapiens
ENSDARG00000027938	rad18	98	52.876	ENSAPOG00000005260	rad18	89	53.595	Acanthochromis_polyacanthus
ENSDARG00000027938	rad18	87	41.148	ENSAMEG00000012375	RAD18	73	41.247	Ailuropoda_melanoleuca
ENSDARG00000027938	rad18	79	50.538	ENSACIG00000020655	rad18	88	50.269	Amphilophus_citrinellus
ENSDARG00000027938	rad18	85	54.229	ENSAOCG00000004507	rad18	91	52.155	Amphiprion_ocellaris
ENSDARG00000027938	rad18	85	54.637	ENSAPEG00000016837	rad18	89	54.637	Amphiprion_percula
ENSDARG00000027938	rad18	80	44.687	ENSAPLG00000003138	RAD18	75	44.687	Anas_platyrhynchos
ENSDARG00000027938	rad18	82	47.945	ENSANAG00000033360	RAD18	72	47.945	Aotus_nancymaae
ENSDARG00000027938	rad18	98	52.735	ENSACLG00000023506	rad18	96	52.561	Astatotilapia_calliptera
ENSDARG00000027938	rad18	97	65.796	ENSAMXG00000002534	rad18	99	66.129	Astyanax_mexicanus
ENSDARG00000027938	rad18	88	43.182	ENSBTAG00000012142	RAD18	88	41.928	Bos_taurus
ENSDARG00000027938	rad18	88	46.907	ENSCJAG00000040303	RAD18	80	46.907	Callithrix_jacchus
ENSDARG00000027938	rad18	87	45.833	ENSCAFG00000005548	RAD18	76	45.833	Canis_familiaris
ENSDARG00000027938	rad18	87	45.833	ENSCAFG00020009228	RAD18	76	45.833	Canis_lupus_dingo
ENSDARG00000027938	rad18	82	46.237	ENSCHIG00000007965	RAD18	94	47.959	Capra_hircus
ENSDARG00000027938	rad18	78	44.602	ENSTSYG00000012189	RAD18	68	46.921	Carlito_syrichta
ENSDARG00000027938	rad18	77	41.926	ENSCAPG00000000356	RAD18	77	41.618	Cavia_aperea
ENSDARG00000027938	rad18	82	45.404	ENSCPOG00000013890	RAD18	72	45.404	Cavia_porcellus
ENSDARG00000027938	rad18	82	47.945	ENSCCAG00000022920	RAD18	72	47.945	Cebus_capucinus
ENSDARG00000027938	rad18	82	47.238	ENSCATG00000039277	RAD18	74	47.238	Cercocebus_atys
ENSDARG00000027938	rad18	82	46.113	ENSCLAG00000003652	RAD18	72	46.113	Chinchilla_lanigera
ENSDARG00000027938	rad18	82	46.961	ENSCSAG00000010783	RAD18	71	46.961	Chlorocebus_sabaeus
ENSDARG00000027938	rad18	94	41.190	ENSCPBG00000014787	RAD18	93	41.084	Chrysemys_picta_bellii
ENSDARG00000027938	rad18	88	46.410	ENSCANG00000007308	RAD18	78	46.410	Colobus_angolensis_palliatus
ENSDARG00000027938	rad18	83	44.474	ENSCGRG00001010209	-	73	44.709	Cricetulus_griseus_chok1gshd
ENSDARG00000027938	rad18	82	46.133	ENSCGRG00001018154	-	79	45.125	Cricetulus_griseus_chok1gshd
ENSDARG00000027938	rad18	83	44.986	ENSCGRG00000019636	-	73	45.628	Cricetulus_griseus_crigri
ENSDARG00000027938	rad18	82	45.576	ENSCGRG00000007283	-	79	45.125	Cricetulus_griseus_crigri
ENSDARG00000027938	rad18	98	55.245	ENSCSEG00000002516	rad18	84	57.632	Cynoglossus_semilaevis
ENSDARG00000027938	rad18	87	45.170	ENSDNOG00000040055	RAD18	76	45.170	Dasypus_novemcinctus
ENSDARG00000027938	rad18	82	44.772	ENSDORG00000001099	Rad18	76	45.739	Dipodomys_ordii
ENSDARG00000027938	rad18	71	42.812	ENSETEG00000002268	RAD18	71	42.462	Echinops_telfairi
ENSDARG00000027938	rad18	82	46.961	ENSEASG00005013316	RAD18	67	46.961	Equus_asinus_asinus
ENSDARG00000027938	rad18	88	45.078	ENSECAG00000010746	RAD18	70	46.961	Equus_caballus
ENSDARG00000027938	rad18	98	50.630	ENSELUG00000000733	rad18	84	54.237	Esox_lucius
ENSDARG00000027938	rad18	89	44.198	ENSFCAG00000025747	RAD18	79	44.198	Felis_catus
ENSDARG00000027938	rad18	86	44.271	ENSFALG00000013625	RAD18	83	44.271	Ficedula_albicollis
ENSDARG00000027938	rad18	82	47.139	ENSFDAG00000009907	RAD18	72	47.139	Fukomys_damarensis
ENSDARG00000027938	rad18	83	44.744	ENSGALG00000008368	RAD18	75	43.666	Gallus_gallus
ENSDARG00000027938	rad18	96	53.521	ENSGACG00000000920	rad18	99	54.195	Gasterosteus_aculeatus
ENSDARG00000027938	rad18	92	40.964	ENSGAGG00000005184	RAD18	71	46.356	Gopherus_agassizii
ENSDARG00000027938	rad18	82	46.685	ENSGGOG00000008391	RAD18	72	46.685	Gorilla_gorilla
ENSDARG00000027938	rad18	98	50.476	ENSHBUG00000013322	rad18	90	53.151	Haplochromis_burtoni
ENSDARG00000027938	rad18	70	47.557	ENSHGLG00000009196	-	97	47.557	Heterocephalus_glaber_female
ENSDARG00000027938	rad18	70	47.557	ENSHGLG00100017675	-	97	47.557	Heterocephalus_glaber_male
ENSDARG00000027938	rad18	98	62.763	ENSIPUG00000018681	rad18	99	60.802	Ictalurus_punctatus
ENSDARG00000027938	rad18	69	45.246	ENSSTOG00000004870	-	96	45.246	Ictidomys_tridecemlineatus
ENSDARG00000027938	rad18	82	45.856	ENSJJAG00000001484	Rad18	79	45.856	Jaculus_jaculus
ENSDARG00000027938	rad18	99	51.794	ENSKMAG00000020725	rad18	91	53.187	Kryptolebias_marmoratus
ENSDARG00000027938	rad18	67	41.667	ENSLACG00000018437	RAD18	99	41.049	Latimeria_chalumnae
ENSDARG00000027938	rad18	100	53.675	ENSLOCG00000010629	rad18	100	53.540	Lepisosteus_oculatus
ENSDARG00000027938	rad18	87	43.182	ENSLAFG00000004667	RAD18	81	43.182	Loxodonta_africana
ENSDARG00000027938	rad18	82	48.066	ENSMFAG00000028864	RAD18	72	48.066	Macaca_fascicularis
ENSDARG00000027938	rad18	82	47.790	ENSMMUG00000020013	RAD18	97	48.693	Macaca_mulatta
ENSDARG00000027938	rad18	82	47.790	ENSMNEG00000013464	RAD18	72	47.790	Macaca_nemestrina
ENSDARG00000027938	rad18	82	47.238	ENSMLEG00000014306	RAD18	72	47.238	Mandrillus_leucophaeus
ENSDARG00000027938	rad18	88	49.526	ENSMAMG00000023936	rad18	91	50.114	Mastacembelus_armatus
ENSDARG00000027938	rad18	96	52.339	ENSMZEG00005010577	rad18	86	53.233	Maylandia_zebra
ENSDARG00000027938	rad18	77	44.669	ENSMGAG00000010131	RAD18	72	45.087	Meleagris_gallopavo
ENSDARG00000027938	rad18	84	45.924	ENSMAUG00000020642	Rad18	81	45.924	Mesocricetus_auratus
ENSDARG00000027938	rad18	79	46.667	ENSMICG00000013536	RAD18	70	46.667	Microcebus_murinus
ENSDARG00000027938	rad18	86	44.961	ENSMOCG00000009114	Rad18	79	44.628	Microtus_ochrogaster
ENSDARG00000027938	rad18	77	50.824	ENSMMOG00000021793	rad18	96	50.824	Mola_mola
ENSDARG00000027938	rad18	93	44.626	ENSMODG00000004679	RAD18	80	44.626	Monodelphis_domestica
ENSDARG00000027938	rad18	87	45.128	MGP_CAROLIEiJ_G0028712	Rad18	98	46.667	Mus_caroli
ENSDARG00000027938	rad18	87	45.547	ENSMUSG00000030254	Rad18	98	46.541	Mus_musculus
ENSDARG00000027938	rad18	87	46.565	MGP_PahariEiJ_G0022463	Rad18	98	48.089	Mus_pahari
ENSDARG00000027938	rad18	87	45.547	MGP_SPRETEiJ_G0029740	Rad18	98	46.541	Mus_spretus
ENSDARG00000027938	rad18	87	47.013	ENSMPUG00000017063	RAD18	76	47.013	Mustela_putorius_furo
ENSDARG00000027938	rad18	82	46.006	ENSMLUG00000016494	RAD18	71	47.658	Myotis_lucifugus
ENSDARG00000027938	rad18	82	47.354	ENSNGAG00000012464	Rad18	83	47.354	Nannospalax_galili
ENSDARG00000027938	rad18	79	50.407	ENSNBRG00000004794	rad18	97	50.407	Neolamprologus_brichardi
ENSDARG00000027938	rad18	82	47.514	ENSNLEG00000003789	RAD18	72	47.514	Nomascus_leucogenys
ENSDARG00000027938	rad18	58	46.947	ENSMEUG00000003444	-	61	46.947	Notamacropus_eugenii
ENSDARG00000027938	rad18	88	43.750	ENSOPRG00000013856	RAD18	77	43.655	Ochotona_princeps
ENSDARG00000027938	rad18	69	47.667	ENSODEG00000018158	RAD18	97	47.667	Octodon_degus
ENSDARG00000027938	rad18	100	54.358	ENSONIG00000018979	rad18	97	54.869	Oreochromis_niloticus
ENSDARG00000027938	rad18	89	43.210	ENSOCUG00000000013	RAD18	77	44.691	Oryctolagus_cuniculus
ENSDARG00000027938	rad18	79	50.546	ENSORLG00000029026	rad18	96	50.546	Oryzias_latipes
ENSDARG00000027938	rad18	87	44.675	ENSOGAG00000001410	RAD18	77	44.675	Otolemur_garnettii
ENSDARG00000027938	rad18	82	45.867	ENSOARG00000007445	RAD18	71	46.486	Ovis_aries
ENSDARG00000027938	rad18	82	46.409	ENSPPAG00000035797	RAD18	72	46.409	Pan_paniscus
ENSDARG00000027938	rad18	89	43.951	ENSPPRG00000004021	RAD18	79	43.951	Panthera_pardus
ENSDARG00000027938	rad18	89	43.951	ENSPTIG00000008602	RAD18	79	43.951	Panthera_tigris_altaica
ENSDARG00000027938	rad18	82	46.409	ENSPTRG00000014583	RAD18	72	46.409	Pan_troglodytes
ENSDARG00000027938	rad18	82	47.514	ENSPANG00000008855	RAD18	72	47.514	Papio_anubis
ENSDARG00000027938	rad18	99	40.498	ENSPSIG00000006928	RAD18	73	45.013	Pelodiscus_sinensis
ENSDARG00000027938	rad18	73	54.829	ENSPMGG00000013294	rad18	93	54.829	Periophthalmus_magnuspinnatus
ENSDARG00000027938	rad18	82	45.000	ENSPEMG00000022129	Rad18	79	44.258	Peromyscus_maniculatus_bairdii
ENSDARG00000027938	rad18	87	45.385	ENSPCIG00000024872	RAD18	83	45.385	Phascolarctos_cinereus
ENSDARG00000027938	rad18	79	53.533	ENSPFOG00000002722	rad18	98	53.533	Poecilia_formosa
ENSDARG00000027938	rad18	82	47.514	ENSPPYG00000013688	RAD18	72	47.514	Pongo_abelii
ENSDARG00000027938	rad18	65	41.304	ENSPCAG00000008229	RAD18	62	41.304	Procavia_capensis
ENSDARG00000027938	rad18	82	45.576	ENSPVAG00000012220	RAD18	73	45.722	Pteropus_vampyrus
ENSDARG00000027938	rad18	96	52.561	ENSPNYG00000006815	rad18	92	53.448	Pundamilia_nyererei
ENSDARG00000027938	rad18	99	63.453	ENSPNAG00000016082	rad18	99	64.509	Pygocentrus_nattereri
ENSDARG00000027938	rad18	87	46.373	ENSRNOG00000005907	Rad18	76	47.120	Rattus_norvegicus
ENSDARG00000027938	rad18	88	44.757	ENSRBIG00000044173	RAD18	78	44.757	Rhinopithecus_bieti
ENSDARG00000027938	rad18	88	46.154	ENSRROG00000043948	RAD18	79	46.154	Rhinopithecus_roxellana
ENSDARG00000027938	rad18	82	47.397	ENSSBOG00000008434	-	72	47.397	Saimiri_boliviensis_boliviensis
ENSDARG00000027938	rad18	86	41.282	ENSSHAG00000012472	-	94	41.282	Sarcophilus_harrisii
ENSDARG00000027938	rad18	97	52.184	ENSSFOG00015019264	rad18	91	52.412	Scleropages_formosus
ENSDARG00000027938	rad18	68	48.322	ENSSPUG00000017486	RAD18	97	48.322	Sphenodon_punctatus
ENSDARG00000027938	rad18	85	54.386	ENSSPAG00000007165	rad18	92	52.495	Stegastes_partitus
ENSDARG00000027938	rad18	87	45.220	ENSSSCG00000026158	RAD18	76	45.220	Sus_scrofa
ENSDARG00000027938	rad18	94	40.758	ENSTGUG00000010405	RAD18	84	42.408	Taeniopygia_guttata
ENSDARG00000027938	rad18	79	51.762	ENSTRUG00000003517	rad18	100	51.762	Takifugu_rubripes
ENSDARG00000027938	rad18	82	57.143	ENSTNIG00000014625	rad18	100	57.143	Tetraodon_nigroviridis
ENSDARG00000027938	rad18	87	44.192	ENSTTRG00000005034	RAD18	77	44.192	Tursiops_truncatus
ENSDARG00000027938	rad18	89	43.341	ENSUMAG00000019279	RAD18	79	43.341	Ursus_maritimus
ENSDARG00000027938	rad18	82	45.304	ENSVPAG00000002063	RAD18	78	45.304	Vicugna_pacos
ENSDARG00000027938	rad18	99	42.572	ENSVVUG00000025318	RAD18	79	45.833	Vulpes_vulpes
ENSDARG00000027938	rad18	80	42.857	ENSXETG00000033878	RAD18	94	42.857	Xenopus_tropicalis
ENSDARG00000027938	rad18	79	47.684	ENSXCOG00000020018	rad18	95	47.684	Xiphophorus_couchianus
ENSDARG00000027938	rad18	79	47.956	ENSXMAG00000001516	rad18	95	47.956	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006301	postreplication repair	21873635.	IBA	Process
GO:0006301	postreplication repair	-	IEA	Process
GO:0006513	protein monoubiquitination	21873635.	IBA	Process
GO:0006513	protein monoubiquitination	-	IEA	Process
GO:0009411	response to UV	21873635.	IBA	Process
GO:0043142	single-stranded DNA-dependent ATPase activity	21873635.	IBA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0061630	ubiquitin protein ligase activity	21873635.	IBA	Function
GO:0061630	ubiquitin protein ligase activity	-	IEA	Function
GO:0097505	Rad6-Rad18 complex	21873635.	IBA	Component