EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000028379 (Gene tree)
Gene ID: 431747
Gene Symbol: trub2
Alias: fc51e05|wu:fc51e05|zgc:91836
Full Name: TruB pseudouridine (psi) synthase family member 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5119 bases
Position: chr6:41023580-41028698
Accession: ZDB-GENE-040704-41
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116763	TruB_N	PF01509.18	1.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134293	-	1318	-	ENSDARP00000116763	352 (aa)	-	F6P6I4
ENSDART00000151101	-	639	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000028379's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000028379's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000028379	trub2	55	32.821	ENSDARG00000053805	trub1	68	31.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000028379	trub2	79	56.679	ENSG00000167112	TRUB2	83	56.679	Homo_sapiens
ENSDARG00000028379	trub2	85	45.667	ENSAPOG00000018284	-	85	60.667	Acanthochromis_polyacanthus
ENSDARG00000028379	trub2	62	64.516	ENSAPOG00000015733	trub2	79	64.516	Acanthochromis_polyacanthus
ENSDARG00000028379	trub2	80	53.546	ENSAMEG00000015395	TRUB2	85	53.546	Ailuropoda_melanoleuca
ENSDARG00000028379	trub2	93	58.537	ENSACIG00000016500	trub2	99	58.537	Amphilophus_citrinellus
ENSDARG00000028379	trub2	85	62.333	ENSAOCG00000002330	trub2	88	62.333	Amphiprion_ocellaris
ENSDARG00000028379	trub2	85	62.333	ENSAPEG00000013177	trub2	88	62.333	Amphiprion_percula
ENSDARG00000028379	trub2	84	62.838	ENSATEG00000011371	trub2	93	62.838	Anabas_testudineus
ENSDARG00000028379	trub2	80	48.475	ENSAPLG00000009254	TRUB2	90	49.645	Anas_platyrhynchos
ENSDARG00000028379	trub2	80	54.804	ENSACAG00000007331	TRUB2	85	54.804	Anolis_carolinensis
ENSDARG00000028379	trub2	80	56.786	ENSANAG00000036234	TRUB2	90	56.786	Aotus_nancymaae
ENSDARG00000028379	trub2	93	57.927	ENSACLG00000010793	trub2	99	57.927	Astatotilapia_calliptera
ENSDARG00000028379	trub2	91	67.702	ENSAMXG00000031679	trub2	91	67.702	Astyanax_mexicanus
ENSDARG00000028379	trub2	80	55.714	ENSCJAG00000020009	TRUB2	84	55.714	Callithrix_jacchus
ENSDARG00000028379	trub2	79	54.317	ENSCAFG00000020068	TRUB2	84	54.317	Canis_familiaris
ENSDARG00000028379	trub2	79	55.396	ENSCHIG00000021160	TRUB2	84	55.396	Capra_hircus
ENSDARG00000028379	trub2	79	56.475	ENSTSYG00000034163	TRUB2	84	56.475	Carlito_syrichta
ENSDARG00000028379	trub2	70	54.435	ENSCAPG00000000223	TRUB2	89	53.901	Cavia_aperea
ENSDARG00000028379	trub2	79	54.676	ENSCPOG00000013535	TRUB2	88	54.386	Cavia_porcellus
ENSDARG00000028379	trub2	80	56.071	ENSCCAG00000026531	-	85	56.071	Cebus_capucinus
ENSDARG00000028379	trub2	79	54.317	ENSCCAG00000028463	-	84	54.317	Cebus_capucinus
ENSDARG00000028379	trub2	79	56.272	ENSCATG00000038234	TRUB2	84	56.272	Cercocebus_atys
ENSDARG00000028379	trub2	79	54.317	ENSCLAG00000001702	TRUB2	96	52.381	Chinchilla_lanigera
ENSDARG00000028379	trub2	80	51.246	ENSCSAG00000014117	TRUB2	84	51.246	Chlorocebus_sabaeus
ENSDARG00000028379	trub2	81	54.225	ENSCHOG00000001555	TRUB2	85	54.225	Choloepus_hoffmanni
ENSDARG00000028379	trub2	79	55.755	ENSCPBG00000025186	TRUB2	81	55.755	Chrysemys_picta_bellii
ENSDARG00000028379	trub2	82	36.271	ENSCSAVG00000003930	-	89	36.271	Ciona_savignyi
ENSDARG00000028379	trub2	79	48.736	ENSCANG00000016135	TRUB2	82	48.736	Colobus_angolensis_palliatus
ENSDARG00000028379	trub2	79	52.878	ENSCGRG00001024441	Trub2	95	50.847	Cricetulus_griseus_chok1gshd
ENSDARG00000028379	trub2	79	52.878	ENSCGRG00000005633	Trub2	84	52.878	Cricetulus_griseus_crigri
ENSDARG00000028379	trub2	93	56.098	ENSCSEG00000001331	trub2	97	56.098	Cynoglossus_semilaevis
ENSDARG00000028379	trub2	84	61.204	ENSCVAG00000009901	trub2	89	61.204	Cyprinodon_variegatus
ENSDARG00000028379	trub2	74	39.098	ENSDNOG00000043967	-	80	39.098	Dasypus_novemcinctus
ENSDARG00000028379	trub2	79	54.513	ENSDNOG00000045679	-	83	54.513	Dasypus_novemcinctus
ENSDARG00000028379	trub2	79	54.152	ENSDORG00000016222	Trub2	87	54.152	Dipodomys_ordii
ENSDARG00000028379	trub2	83	35.034	FBgn0033060	CG7849	92	35.034	Drosophila_melanogaster
ENSDARG00000028379	trub2	79	54.152	ENSETEG00000009114	TRUB2	85	54.152	Echinops_telfairi
ENSDARG00000028379	trub2	63	52.381	ENSEBUG00000015723	trub2	81	52.381	Eptatretus_burgeri
ENSDARG00000028379	trub2	79	55.755	ENSEASG00005016819	TRUB2	84	55.755	Equus_asinus_asinus
ENSDARG00000028379	trub2	79	56.115	ENSECAG00000023520	TRUB2	84	56.115	Equus_caballus
ENSDARG00000028379	trub2	82	51.546	ENSEEUG00000008908	TRUB2	88	51.546	Erinaceus_europaeus
ENSDARG00000028379	trub2	85	62.620	ENSELUG00000002376	trub2	98	62.620	Esox_lucius
ENSDARG00000028379	trub2	79	56.115	ENSFCAG00000005839	TRUB2	86	56.115	Felis_catus
ENSDARG00000028379	trub2	84	50.000	ENSFALG00000001364	TRUB2	95	50.000	Ficedula_albicollis
ENSDARG00000028379	trub2	79	55.396	ENSFDAG00000021374	TRUB2	95	52.973	Fukomys_damarensis
ENSDARG00000028379	trub2	88	53.376	ENSFHEG00000014655	trub2	92	53.376	Fundulus_heteroclitus
ENSDARG00000028379	trub2	85	54.027	ENSGMOG00000000981	trub2	100	54.027	Gadus_morhua
ENSDARG00000028379	trub2	88	48.553	ENSGALG00000004920	TRUB2	76	48.553	Gallus_gallus
ENSDARG00000028379	trub2	82	61.672	ENSGAFG00000010107	trub2	99	55.891	Gambusia_affinis
ENSDARG00000028379	trub2	87	60.131	ENSGACG00000001476	trub2	92	60.131	Gasterosteus_aculeatus
ENSDARG00000028379	trub2	78	55.072	ENSGAGG00000022872	TRUB2	82	55.072	Gopherus_agassizii
ENSDARG00000028379	trub2	79	55.556	ENSGGOG00000014780	TRUB2	84	55.556	Gorilla_gorilla
ENSDARG00000028379	trub2	93	58.537	ENSHBUG00000022384	trub2	99	58.537	Haplochromis_burtoni
ENSDARG00000028379	trub2	79	55.036	ENSHGLG00000016715	TRUB2	84	55.036	Heterocephalus_glaber_female
ENSDARG00000028379	trub2	79	55.036	ENSHGLG00100016548	TRUB2	84	55.036	Heterocephalus_glaber_male
ENSDARG00000028379	trub2	92	59.509	ENSHCOG00000017748	trub2	99	59.509	Hippocampus_comes
ENSDARG00000028379	trub2	93	67.278	ENSIPUG00000017725	hdhd3	57	67.278	Ictalurus_punctatus
ENSDARG00000028379	trub2	79	53.597	ENSSTOG00000008024	-	96	48.936	Ictidomys_tridecemlineatus
ENSDARG00000028379	trub2	79	53.597	ENSSTOG00000022617	-	84	53.597	Ictidomys_tridecemlineatus
ENSDARG00000028379	trub2	79	47.482	ENSJJAG00000019181	Trub2	82	47.482	Jaculus_jaculus
ENSDARG00000028379	trub2	94	55.891	ENSKMAG00000007861	trub2	98	55.891	Kryptolebias_marmoratus
ENSDARG00000028379	trub2	85	61.333	ENSLBEG00000000907	trub2	88	61.333	Labrus_bergylta
ENSDARG00000028379	trub2	94	49.697	ENSLACG00000001515	TRUB2	96	49.697	Latimeria_chalumnae
ENSDARG00000028379	trub2	85	61.667	ENSLOCG00000000885	trub2	98	61.667	Lepisosteus_oculatus
ENSDARG00000028379	trub2	79	54.676	ENSLAFG00000002174	TRUB2	91	54.676	Loxodonta_africana
ENSDARG00000028379	trub2	79	55.914	ENSMFAG00000000881	TRUB2	84	55.914	Macaca_fascicularis
ENSDARG00000028379	trub2	79	55.914	ENSMMUG00000014146	TRUB2	84	55.914	Macaca_mulatta
ENSDARG00000028379	trub2	79	55.914	ENSMNEG00000011189	TRUB2	84	55.914	Macaca_nemestrina
ENSDARG00000028379	trub2	79	55.914	ENSMLEG00000037270	TRUB2	84	55.914	Mandrillus_leucophaeus
ENSDARG00000028379	trub2	86	60.927	ENSMAMG00000023643	trub2	100	60.927	Mastacembelus_armatus
ENSDARG00000028379	trub2	93	58.232	ENSMZEG00005016018	trub2	99	58.232	Maylandia_zebra
ENSDARG00000028379	trub2	52	57.377	ENSMGAG00000003894	TRUB2	92	57.377	Meleagris_gallopavo
ENSDARG00000028379	trub2	79	53.597	ENSMAUG00000010403	Trub2	96	51.064	Mesocricetus_auratus
ENSDARG00000028379	trub2	79	56.835	ENSMICG00000047032	TRUB2	84	56.835	Microcebus_murinus
ENSDARG00000028379	trub2	79	52.878	ENSMOCG00000014291	Trub2	95	50.538	Microtus_ochrogaster
ENSDARG00000028379	trub2	92	58.951	ENSMMOG00000021674	trub2	99	58.951	Mola_mola
ENSDARG00000028379	trub2	79	53.763	ENSMODG00000005940	TRUB2	94	53.763	Monodelphis_domestica
ENSDARG00000028379	trub2	84	65.101	ENSMALG00000021231	trub2	88	65.101	Monopterus_albus
ENSDARG00000028379	trub2	80	53.571	MGP_CAROLIEiJ_G0023368	Trub2	96	51.064	Mus_caroli
ENSDARG00000028379	trub2	79	53.597	ENSMUSG00000039826	Trub2	95	51.075	Mus_musculus
ENSDARG00000028379	trub2	79	53.957	MGP_PahariEiJ_G0024826	Trub2	88	54.386	Mus_pahari
ENSDARG00000028379	trub2	79	53.237	MGP_SPRETEiJ_G0024286	Trub2	96	51.064	Mus_spretus
ENSDARG00000028379	trub2	80	52.837	ENSMPUG00000013206	TRUB2	77	52.837	Mustela_putorius_furo
ENSDARG00000028379	trub2	79	56.115	ENSMLUG00000005256	TRUB2	83	56.115	Myotis_lucifugus
ENSDARG00000028379	trub2	79	51.799	ENSNGAG00000018679	Trub2	84	51.799	Nannospalax_galili
ENSDARG00000028379	trub2	93	59.146	ENSNBRG00000016294	trub2	99	59.146	Neolamprologus_brichardi
ENSDARG00000028379	trub2	79	56.679	ENSNLEG00000017556	TRUB2	83	56.679	Nomascus_leucogenys
ENSDARG00000028379	trub2	79	55.596	ENSMEUG00000000484	TRUB2	89	55.596	Notamacropus_eugenii
ENSDARG00000028379	trub2	79	51.079	ENSOPRG00000001981	TRUB2	84	51.079	Ochotona_princeps
ENSDARG00000028379	trub2	79	54.874	ENSODEG00000017292	TRUB2	96	50.265	Octodon_degus
ENSDARG00000028379	trub2	93	58.232	ENSONIG00000004230	trub2	99	58.232	Oreochromis_niloticus
ENSDARG00000028379	trub2	53	53.723	ENSOANG00000029023	-	83	53.723	Ornithorhynchus_anatinus
ENSDARG00000028379	trub2	79	53.957	ENSOCUG00000026296	TRUB2	76	53.957	Oryctolagus_cuniculus
ENSDARG00000028379	trub2	85	60.912	ENSORLG00000020011	trub2	92	60.656	Oryzias_latipes
ENSDARG00000028379	trub2	83	61.224	ENSORLG00020011028	trub2	86	61.224	Oryzias_latipes_hni
ENSDARG00000028379	trub2	83	61.224	ENSORLG00015007494	trub2	90	61.905	Oryzias_latipes_hsok
ENSDARG00000028379	trub2	84	61.356	ENSOMEG00000006702	trub2	90	61.356	Oryzias_melastigma
ENSDARG00000028379	trub2	79	56.115	ENSOARG00000010579	-	84	56.115	Ovis_aries
ENSDARG00000028379	trub2	57	56.500	ENSOARG00000003785	-	81	56.098	Ovis_aries
ENSDARG00000028379	trub2	79	56.679	ENSPPAG00000043146	TRUB2	83	56.679	Pan_paniscus
ENSDARG00000028379	trub2	79	56.115	ENSPPRG00000006307	TRUB2	86	56.115	Panthera_pardus
ENSDARG00000028379	trub2	79	56.475	ENSPTIG00000012366	TRUB2	86	56.475	Panthera_tigris_altaica
ENSDARG00000028379	trub2	79	56.318	ENSPTRG00000021423	TRUB2	83	56.318	Pan_troglodytes
ENSDARG00000028379	trub2	79	56.318	ENSPTRG00000052151	-	83	56.318	Pan_troglodytes
ENSDARG00000028379	trub2	79	55.914	ENSPANG00000025856	TRUB2	84	55.914	Papio_anubis
ENSDARG00000028379	trub2	85	63.667	ENSPKIG00000019769	trub2	98	63.667	Paramormyrops_kingsleyae
ENSDARG00000028379	trub2	80	50.890	ENSPSIG00000015701	TRUB2	93	50.890	Pelodiscus_sinensis
ENSDARG00000028379	trub2	83	61.905	ENSPMGG00000010206	trub2	92	61.905	Periophthalmus_magnuspinnatus
ENSDARG00000028379	trub2	86	50.327	ENSPEMG00000017893	Trub2	95	51.124	Peromyscus_maniculatus_bairdii
ENSDARG00000028379	trub2	82	53.659	ENSPCIG00000026731	TRUB2	91	53.659	Phascolarctos_cinereus
ENSDARG00000028379	trub2	80	65.000	ENSPFOG00000018018	trub2	77	63.699	Poecilia_formosa
ENSDARG00000028379	trub2	80	64.286	ENSPLAG00000010484	trub2	84	63.014	Poecilia_latipinna
ENSDARG00000028379	trub2	86	62.046	ENSPMEG00000012913	trub2	90	62.046	Poecilia_mexicana
ENSDARG00000028379	trub2	82	63.415	ENSPREG00000002549	trub2	89	61.667	Poecilia_reticulata
ENSDARG00000028379	trub2	80	55.357	ENSPPYG00000019650	TRUB2	86	55.357	Pongo_abelii
ENSDARG00000028379	trub2	79	55.396	ENSPCAG00000015068	TRUB2	85	55.396	Procavia_capensis
ENSDARG00000028379	trub2	79	57.194	ENSPCOG00000017100	TRUB2	84	57.194	Propithecus_coquereli
ENSDARG00000028379	trub2	74	55.385	ENSPVAG00000001224	TRUB2	87	55.385	Pteropus_vampyrus
ENSDARG00000028379	trub2	93	58.232	ENSPNYG00000013666	trub2	99	58.232	Pundamilia_nyererei
ENSDARG00000028379	trub2	94	69.394	ENSPNAG00000017292	trub2	94	69.394	Pygocentrus_nattereri
ENSDARG00000028379	trub2	82	52.234	ENSRNOG00000043189	Trub2	90	52.234	Rattus_norvegicus
ENSDARG00000028379	trub2	80	48.929	ENSRBIG00000006965	TRUB2	83	48.929	Rhinopithecus_bieti
ENSDARG00000028379	trub2	80	55.357	ENSRROG00000042928	TRUB2	84	55.357	Rhinopithecus_roxellana
ENSDARG00000028379	trub2	79	56.475	ENSSBOG00000022439	TRUB2	84	56.475	Saimiri_boliviensis_boliviensis
ENSDARG00000028379	trub2	82	65.972	ENSSFOG00015013391	trub2	92	65.972	Scleropages_formosus
ENSDARG00000028379	trub2	88	59.164	ENSSMAG00000020820	trub2	94	59.164	Scophthalmus_maximus
ENSDARG00000028379	trub2	82	63.103	ENSSDUG00000016928	trub2	98	58.104	Seriola_dumerili
ENSDARG00000028379	trub2	82	63.103	ENSSLDG00000024701	trub2	98	57.798	Seriola_lalandi_dorsalis
ENSDARG00000028379	trub2	80	55.124	ENSSPUG00000015515	TRUB2	84	55.124	Sphenodon_punctatus
ENSDARG00000028379	trub2	93	61.585	ENSSPAG00000017865	trub2	99	61.585	Stegastes_partitus
ENSDARG00000028379	trub2	79	56.115	ENSSSCG00000005645	TRUB2	84	56.225	Sus_scrofa
ENSDARG00000028379	trub2	71	55.823	ENSTGUG00000003704	TRUB2	95	55.823	Taeniopygia_guttata
ENSDARG00000028379	trub2	84	58.108	ENSTRUG00000015499	trub2	91	58.108	Takifugu_rubripes
ENSDARG00000028379	trub2	82	61.724	ENSTNIG00000014721	trub2	99	61.724	Tetraodon_nigroviridis
ENSDARG00000028379	trub2	51	56.180	ENSTBEG00000000586	TRUB2	79	56.180	Tupaia_belangeri
ENSDARG00000028379	trub2	79	53.237	ENSTTRG00000016486	TRUB2	84	53.237	Tursiops_truncatus
ENSDARG00000028379	trub2	80	53.191	ENSUAMG00000020276	TRUB2	83	53.191	Ursus_americanus
ENSDARG00000028379	trub2	80	53.546	ENSUMAG00000022051	TRUB2	83	53.546	Ursus_maritimus
ENSDARG00000028379	trub2	79	41.367	ENSVPAG00000005793	TRUB2	87	41.367	Vicugna_pacos
ENSDARG00000028379	trub2	79	54.317	ENSVVUG00000013451	TRUB2	79	54.317	Vulpes_vulpes
ENSDARG00000028379	trub2	83	58.076	ENSXETG00000003973	trub2	89	58.076	Xenopus_tropicalis
ENSDARG00000028379	trub2	83	61.512	ENSXCOG00000008759	trub2	89	60.333	Xiphophorus_couchianus
ENSDARG00000028379	trub2	83	62.199	ENSXMAG00000015478	trub2	89	61.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0006396	RNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function