EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000028688 (Gene tree)
Gene ID: 550234
Gene Symbol: exosc2
Alias: fa97b01|wu:fa97b01|zgc:110117
Full Name: exosome component 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5962 bases
Position: chr5:72137331-72143292
Accession: ZDB-GENE-050417-27
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124376	ECR1_N	PF14382.6	2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149195	-	1032	-	ENSDARP00000124376	295 (aa)	-	F8W3K6
ENSDART00000150216	-	782	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000028688's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000028688's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000028688	exosc2	100	77.966	ENSG00000130713	EXOSC2	100	77.966	Homo_sapiens
ENSDARG00000028688	exosc2	90	83.019	ENSAPOG00000008861	exosc2	97	83.019	Acanthochromis_polyacanthus
ENSDARG00000028688	exosc2	100	77.966	ENSAMEG00000016239	EXOSC2	100	77.966	Ailuropoda_melanoleuca
ENSDARG00000028688	exosc2	100	82.712	ENSACIG00000019054	exosc2	100	82.712	Amphilophus_citrinellus
ENSDARG00000028688	exosc2	100	83.051	ENSAOCG00000004983	exosc2	100	83.051	Amphiprion_ocellaris
ENSDARG00000028688	exosc2	100	83.051	ENSAOCG00000008577	exosc2	100	83.051	Amphiprion_ocellaris
ENSDARG00000028688	exosc2	100	83.051	ENSAPEG00000014088	exosc2	100	83.051	Amphiprion_percula
ENSDARG00000028688	exosc2	100	83.051	ENSATEG00000018680	exosc2	100	83.051	Anabas_testudineus
ENSDARG00000028688	exosc2	92	82.051	ENSAPLG00000012516	EXOSC2	94	82.051	Anas_platyrhynchos
ENSDARG00000028688	exosc2	99	75.170	ENSACAG00000002706	EXOSC2	99	75.170	Anolis_carolinensis
ENSDARG00000028688	exosc2	100	81.695	ENSACLG00000013613	exosc2	100	81.695	Astatotilapia_calliptera
ENSDARG00000028688	exosc2	100	84.068	ENSAMXG00000042605	exosc2	100	84.068	Astyanax_mexicanus
ENSDARG00000028688	exosc2	100	78.644	ENSBTAG00000048071	EXOSC2	100	78.644	Bos_taurus
ENSDARG00000028688	exosc2	95	39.858	WBGene00022232	exos-2	93	39.858	Caenorhabditis_elegans
ENSDARG00000028688	exosc2	100	77.966	ENSCJAG00000020537	EXOSC2	100	77.966	Callithrix_jacchus
ENSDARG00000028688	exosc2	99	76.871	ENSCAFG00000019941	EXOSC2	99	76.871	Canis_familiaris
ENSDARG00000028688	exosc2	100	76.949	ENSCAFG00020024047	EXOSC2	100	76.949	Canis_lupus_dingo
ENSDARG00000028688	exosc2	100	78.305	ENSCHIG00000021398	EXOSC2	100	78.305	Capra_hircus
ENSDARG00000028688	exosc2	100	77.966	ENSTSYG00000001805	EXOSC2	100	77.966	Carlito_syrichta
ENSDARG00000028688	exosc2	100	73.826	ENSCPOG00000005902	EXOSC2	100	73.826	Cavia_porcellus
ENSDARG00000028688	exosc2	100	77.966	ENSCCAG00000019749	EXOSC2	100	77.966	Cebus_capucinus
ENSDARG00000028688	exosc2	100	78.305	ENSCATG00000025389	-	100	78.305	Cercocebus_atys
ENSDARG00000028688	exosc2	100	77.627	ENSCLAG00000006195	EXOSC2	100	77.627	Chinchilla_lanigera
ENSDARG00000028688	exosc2	100	78.305	ENSCSAG00000014760	EXOSC2	100	78.305	Chlorocebus_sabaeus
ENSDARG00000028688	exosc2	100	76.610	ENSCHOG00000000858	EXOSC2	100	76.610	Choloepus_hoffmanni
ENSDARG00000028688	exosc2	99	77.551	ENSCPBG00000022626	EXOSC2	99	77.551	Chrysemys_picta_bellii
ENSDARG00000028688	exosc2	96	60.345	ENSCING00000014934	-	94	60.345	Ciona_intestinalis
ENSDARG00000028688	exosc2	93	61.871	ENSCSAVG00000003684	-	100	61.871	Ciona_savignyi
ENSDARG00000028688	exosc2	100	78.305	ENSCANG00000039828	-	100	78.305	Colobus_angolensis_palliatus
ENSDARG00000028688	exosc2	99	70.748	ENSCANG00000029298	-	99	70.748	Colobus_angolensis_palliatus
ENSDARG00000028688	exosc2	100	78.305	ENSCGRG00001013981	Exosc2	100	78.305	Cricetulus_griseus_chok1gshd
ENSDARG00000028688	exosc2	100	78.305	ENSCGRG00000017629	Exosc2	100	78.305	Cricetulus_griseus_crigri
ENSDARG00000028688	exosc2	100	81.017	ENSCSEG00000016539	exosc2	100	81.017	Cynoglossus_semilaevis
ENSDARG00000028688	exosc2	100	81.695	ENSCVAG00000022260	exosc2	100	81.695	Cyprinodon_variegatus
ENSDARG00000028688	exosc2	91	76.580	ENSDNOG00000025767	-	100	76.580	Dasypus_novemcinctus
ENSDARG00000028688	exosc2	100	78.644	ENSDORG00000009238	Exosc2	100	78.644	Dipodomys_ordii
ENSDARG00000028688	exosc2	93	58.182	FBgn0034879	Rrp4	91	59.779	Drosophila_melanogaster
ENSDARG00000028688	exosc2	92	67.037	ENSETEG00000016130	-	97	67.037	Echinops_telfairi
ENSDARG00000028688	exosc2	100	78.644	ENSEASG00005008475	EXOSC2	86	78.644	Equus_asinus_asinus
ENSDARG00000028688	exosc2	100	78.644	ENSECAG00000007897	EXOSC2	86	78.644	Equus_caballus
ENSDARG00000028688	exosc2	100	82.712	ENSELUG00000013641	exosc2	100	82.712	Esox_lucius
ENSDARG00000028688	exosc2	100	77.288	ENSFCAG00000025936	EXOSC2	100	77.288	Felis_catus
ENSDARG00000028688	exosc2	99	75.170	ENSFALG00000001446	EXOSC2	99	75.170	Ficedula_albicollis
ENSDARG00000028688	exosc2	100	76.610	ENSFDAG00000017196	EXOSC2	100	76.610	Fukomys_damarensis
ENSDARG00000028688	exosc2	100	82.712	ENSFHEG00000018571	exosc2	100	82.712	Fundulus_heteroclitus
ENSDARG00000028688	exosc2	100	78.378	ENSGMOG00000011785	exosc2	99	78.378	Gadus_morhua
ENSDARG00000028688	exosc2	99	79.252	ENSGALG00000040373	EXOSC2	99	79.252	Gallus_gallus
ENSDARG00000028688	exosc2	99	82.313	ENSGAFG00000010283	exosc2	99	82.313	Gambusia_affinis
ENSDARG00000028688	exosc2	100	80.000	ENSGACG00000016805	exosc2	99	81.548	Gasterosteus_aculeatus
ENSDARG00000028688	exosc2	89	79.167	ENSGAGG00000021026	EXOSC2	99	79.167	Gopherus_agassizii
ENSDARG00000028688	exosc2	100	77.288	ENSGGOG00000010578	EXOSC2	100	77.288	Gorilla_gorilla
ENSDARG00000028688	exosc2	100	82.373	ENSHBUG00000022437	exosc2	100	82.373	Haplochromis_burtoni
ENSDARG00000028688	exosc2	100	77.966	ENSHGLG00000012834	EXOSC2	100	77.966	Heterocephalus_glaber_female
ENSDARG00000028688	exosc2	100	77.966	ENSHGLG00100007092	EXOSC2	100	77.966	Heterocephalus_glaber_male
ENSDARG00000028688	exosc2	100	80.339	ENSHCOG00000019130	exosc2	100	80.339	Hippocampus_comes
ENSDARG00000028688	exosc2	100	82.034	ENSIPUG00000015397	exosc2	100	82.034	Ictalurus_punctatus
ENSDARG00000028688	exosc2	100	77.627	ENSSTOG00000005999	EXOSC2	100	77.627	Ictidomys_tridecemlineatus
ENSDARG00000028688	exosc2	100	77.627	ENSJJAG00000003188	Exosc2	100	77.627	Jaculus_jaculus
ENSDARG00000028688	exosc2	99	80.952	ENSKMAG00000017397	exosc2	99	80.952	Kryptolebias_marmoratus
ENSDARG00000028688	exosc2	100	81.356	ENSLBEG00000019269	exosc2	100	81.356	Labrus_bergylta
ENSDARG00000028688	exosc2	100	78.305	ENSLACG00000015530	EXOSC2	100	78.305	Latimeria_chalumnae
ENSDARG00000028688	exosc2	100	77.365	ENSLAFG00000006984	EXOSC2	100	77.365	Loxodonta_africana
ENSDARG00000028688	exosc2	100	68.814	ENSMFAG00000034160	-	84	68.814	Macaca_fascicularis
ENSDARG00000028688	exosc2	100	78.305	ENSMFAG00000000597	-	100	78.305	Macaca_fascicularis
ENSDARG00000028688	exosc2	100	75.593	ENSMMUG00000012498	EXOSC2	100	75.593	Macaca_mulatta
ENSDARG00000028688	exosc2	100	69.153	ENSMNEG00000028704	-	91	69.153	Macaca_nemestrina
ENSDARG00000028688	exosc2	100	78.305	ENSMNEG00000031861	-	100	78.305	Macaca_nemestrina
ENSDARG00000028688	exosc2	100	78.305	ENSMLEG00000042587	-	100	78.305	Mandrillus_leucophaeus
ENSDARG00000028688	exosc2	100	68.814	ENSMLEG00000029891	-	91	68.814	Mandrillus_leucophaeus
ENSDARG00000028688	exosc2	100	82.373	ENSMAMG00000012466	exosc2	100	82.373	Mastacembelus_armatus
ENSDARG00000028688	exosc2	100	81.017	ENSMZEG00005018737	exosc2	100	81.017	Maylandia_zebra
ENSDARG00000028688	exosc2	99	79.252	ENSMGAG00000005450	EXOSC2	99	79.252	Meleagris_gallopavo
ENSDARG00000028688	exosc2	100	78.305	ENSMAUG00000008299	Exosc2	100	78.305	Mesocricetus_auratus
ENSDARG00000028688	exosc2	100	78.644	ENSMICG00000015495	EXOSC2	100	78.644	Microcebus_murinus
ENSDARG00000028688	exosc2	100	77.966	ENSMOCG00000008262	Exosc2	100	77.966	Microtus_ochrogaster
ENSDARG00000028688	exosc2	100	82.373	ENSMMOG00000009616	exosc2	100	82.373	Mola_mola
ENSDARG00000028688	exosc2	100	77.288	ENSMODG00000012114	EXOSC2	100	77.288	Monodelphis_domestica
ENSDARG00000028688	exosc2	100	83.051	ENSMALG00000022132	exosc2	100	83.051	Monopterus_albus
ENSDARG00000028688	exosc2	100	77.966	MGP_CAROLIEiJ_G0023415	Exosc2	100	77.966	Mus_caroli
ENSDARG00000028688	exosc2	100	77.966	ENSMUSG00000039356	Exosc2	100	77.966	Mus_musculus
ENSDARG00000028688	exosc2	100	78.305	MGP_PahariEiJ_G0024872	Exosc2	100	78.305	Mus_pahari
ENSDARG00000028688	exosc2	100	77.966	MGP_SPRETEiJ_G0024332	Exosc2	100	77.966	Mus_spretus
ENSDARG00000028688	exosc2	100	77.966	ENSMPUG00000012686	EXOSC2	100	77.966	Mustela_putorius_furo
ENSDARG00000028688	exosc2	100	77.778	ENSMLUG00000008776	EXOSC2	100	77.778	Myotis_lucifugus
ENSDARG00000028688	exosc2	100	78.644	ENSNGAG00000019383	Exosc2	100	78.644	Nannospalax_galili
ENSDARG00000028688	exosc2	100	81.695	ENSNBRG00000005453	exosc2	100	81.695	Neolamprologus_brichardi
ENSDARG00000028688	exosc2	100	77.966	ENSNLEG00000012533	EXOSC2	100	77.966	Nomascus_leucogenys
ENSDARG00000028688	exosc2	100	59.322	ENSMEUG00000000795	EXOSC2	100	59.322	Notamacropus_eugenii
ENSDARG00000028688	exosc2	65	84.615	ENSOPRG00000008688	EXOSC2	65	84.615	Ochotona_princeps
ENSDARG00000028688	exosc2	100	76.610	ENSODEG00000016880	-	100	76.610	Octodon_degus
ENSDARG00000028688	exosc2	86	79.528	ENSODEG00000019513	-	100	79.528	Octodon_degus
ENSDARG00000028688	exosc2	100	82.034	ENSONIG00000014086	exosc2	100	82.034	Oreochromis_niloticus
ENSDARG00000028688	exosc2	100	74.915	ENSOANG00000001044	EXOSC2	100	74.915	Ornithorhynchus_anatinus
ENSDARG00000028688	exosc2	100	78.983	ENSOCUG00000007138	EXOSC2	100	78.983	Oryctolagus_cuniculus
ENSDARG00000028688	exosc2	100	81.356	ENSORLG00000007443	exosc2	100	81.356	Oryzias_latipes
ENSDARG00000028688	exosc2	100	81.017	ENSORLG00020018902	exosc2	100	81.017	Oryzias_latipes_hni
ENSDARG00000028688	exosc2	100	81.356	ENSORLG00015006767	exosc2	100	81.356	Oryzias_latipes_hsok
ENSDARG00000028688	exosc2	100	81.017	ENSOMEG00000003533	exosc2	100	81.017	Oryzias_melastigma
ENSDARG00000028688	exosc2	100	77.966	ENSOGAG00000007558	EXOSC2	100	77.966	Otolemur_garnettii
ENSDARG00000028688	exosc2	100	78.114	ENSOARG00000007438	EXOSC2	100	78.114	Ovis_aries
ENSDARG00000028688	exosc2	100	77.966	ENSPPAG00000034796	EXOSC2	100	77.966	Pan_paniscus
ENSDARG00000028688	exosc2	100	76.949	ENSPPRG00000001089	EXOSC2	100	76.949	Panthera_pardus
ENSDARG00000028688	exosc2	100	76.949	ENSPTIG00000021163	EXOSC2	100	76.949	Panthera_tigris_altaica
ENSDARG00000028688	exosc2	100	77.966	ENSPTRG00000021476	EXOSC2	100	77.966	Pan_troglodytes
ENSDARG00000028688	exosc2	100	77.966	ENSPTRG00000045766	-	100	77.966	Pan_troglodytes
ENSDARG00000028688	exosc2	100	78.305	ENSPANG00000025966	EXOSC2	100	78.305	Papio_anubis
ENSDARG00000028688	exosc2	99	81.100	ENSPKIG00000004271	exosc2	98	81.100	Paramormyrops_kingsleyae
ENSDARG00000028688	exosc2	99	77.211	ENSPSIG00000006743	EXOSC2	99	77.211	Pelodiscus_sinensis
ENSDARG00000028688	exosc2	86	85.771	ENSPMGG00000010980	exosc2	99	85.771	Periophthalmus_magnuspinnatus
ENSDARG00000028688	exosc2	100	77.966	ENSPEMG00000006345	Exosc2	100	77.966	Peromyscus_maniculatus_bairdii
ENSDARG00000028688	exosc2	100	74.915	ENSPMAG00000001280	exosc2	100	74.915	Petromyzon_marinus
ENSDARG00000028688	exosc2	100	77.288	ENSPCIG00000024122	EXOSC2	97	77.288	Phascolarctos_cinereus
ENSDARG00000028688	exosc2	99	82.712	ENSPFOG00000019819	exosc2	99	82.712	Poecilia_formosa
ENSDARG00000028688	exosc2	99	82.993	ENSPLAG00000004605	exosc2	99	82.993	Poecilia_latipinna
ENSDARG00000028688	exosc2	99	82.993	ENSPMEG00000010976	exosc2	99	82.993	Poecilia_mexicana
ENSDARG00000028688	exosc2	99	82.653	ENSPREG00000014306	exosc2	99	82.653	Poecilia_reticulata
ENSDARG00000028688	exosc2	100	78.305	ENSPPYG00000019695	EXOSC2	100	78.305	Pongo_abelii
ENSDARG00000028688	exosc2	100	78.644	ENSPCAG00000013400	EXOSC2	100	78.644	Procavia_capensis
ENSDARG00000028688	exosc2	100	78.644	ENSPCOG00000017639	EXOSC2	100	78.644	Propithecus_coquereli
ENSDARG00000028688	exosc2	100	77.288	ENSPVAG00000001513	EXOSC2	100	77.288	Pteropus_vampyrus
ENSDARG00000028688	exosc2	100	82.373	ENSPNYG00000007383	exosc2	100	82.373	Pundamilia_nyererei
ENSDARG00000028688	exosc2	100	84.746	ENSPNAG00000014281	exosc2	100	84.746	Pygocentrus_nattereri
ENSDARG00000028688	exosc2	100	77.627	ENSRNOG00000009245	Exosc2	100	77.627	Rattus_norvegicus
ENSDARG00000028688	exosc2	99	71.088	ENSRBIG00000029791	-	99	71.088	Rhinopithecus_bieti
ENSDARG00000028688	exosc2	100	78.305	ENSRBIG00000031203	-	100	78.305	Rhinopithecus_bieti
ENSDARG00000028688	exosc2	100	78.305	ENSRROG00000010827	-	100	78.305	Rhinopithecus_roxellana
ENSDARG00000028688	exosc2	99	70.068	ENSRROG00000043609	-	99	70.068	Rhinopithecus_roxellana
ENSDARG00000028688	exosc2	91	41.914	YHR069C	-	84	41.914	Saccharomyces_cerevisiae
ENSDARG00000028688	exosc2	100	77.627	ENSSBOG00000022712	EXOSC2	100	77.627	Saimiri_boliviensis_boliviensis
ENSDARG00000028688	exosc2	100	77.288	ENSSHAG00000016050	EXOSC2	100	77.288	Sarcophilus_harrisii
ENSDARG00000028688	exosc2	100	81.695	ENSSFOG00015011245	exosc2	100	81.695	Scleropages_formosus
ENSDARG00000028688	exosc2	100	80.678	ENSSMAG00000003112	exosc2	100	80.678	Scophthalmus_maximus
ENSDARG00000028688	exosc2	100	81.208	ENSSDUG00000004634	exosc2	100	81.208	Seriola_dumerili
ENSDARG00000028688	exosc2	100	82.034	ENSSLDG00000010616	exosc2	100	82.034	Seriola_lalandi_dorsalis
ENSDARG00000028688	exosc2	99	77.627	ENSSPUG00000013391	EXOSC2	99	77.627	Sphenodon_punctatus
ENSDARG00000028688	exosc2	100	82.712	ENSSPAG00000022947	exosc2	100	82.712	Stegastes_partitus
ENSDARG00000028688	exosc2	100	78.305	ENSSSCG00000005704	EXOSC2	100	78.305	Sus_scrofa
ENSDARG00000028688	exosc2	99	75.170	ENSTGUG00000004697	EXOSC2	99	75.170	Taeniopygia_guttata
ENSDARG00000028688	exosc2	100	76.271	ENSTRUG00000022436	exosc2	100	76.271	Takifugu_rubripes
ENSDARG00000028688	exosc2	100	73.559	ENSTTRG00000015159	EXOSC2	100	73.559	Tursiops_truncatus
ENSDARG00000028688	exosc2	95	75.269	ENSUAMG00000009651	EXOSC2	99	75.269	Ursus_americanus
ENSDARG00000028688	exosc2	100	77.966	ENSUMAG00000018726	EXOSC2	100	77.966	Ursus_maritimus
ENSDARG00000028688	exosc2	100	76.949	ENSVVUG00000027665	EXOSC2	100	76.949	Vulpes_vulpes
ENSDARG00000028688	exosc2	100	77.966	ENSXETG00000001340	exosc2	100	77.966	Xenopus_tropicalis
ENSDARG00000028688	exosc2	99	82.313	ENSXMAG00000005265	exosc2	99	82.313	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000177	cytoplasmic exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	-	IEA	Component
GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	21873635.	IBA	Process
GO:0034475	U4 snRNA 3'-end processing	21873635.	IBA	Process
GO:0043928	exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	21873635.	IBA	Process
GO:0071034	CUT catabolic process	21873635.	IBA	Process
GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process	21873635.	IBA	Process
GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process	21873635.	IBA	Process
GO:0071049	nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	21873635.	IBA	Process
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	21873635.	IBA	Process