EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000028848 (Gene tree)
Gene ID: 407986
Gene Symbol: lsm12a
Alias: zgc:85812
Full Name: LSM12 homolog a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10336 bases
Position: chr3:22984098-22994433
Accession: ZDB-GENE-040516-12
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000043189	AD	PF09793.9	9.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000043190	-	1938	-	ENSDARP00000043189	196 (aa)	-	Q6NSN1

Gene Model

Click here to download ENSDARG00000028848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000028848's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000028848	lsm12a	100	86.735	ENSDARG00000109510	lsm12b	100	86.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000028848	lsm12a	100	77.041	ENSG00000161654	LSM12	100	77.041	Homo_sapiens
ENSDARG00000028848	lsm12a	100	87.755	ENSAPOG00000007907	lsm12b	100	87.755	Acanthochromis_polyacanthus
ENSDARG00000028848	lsm12a	100	75.377	ENSAMEG00000018321	LSM12	100	75.377	Ailuropoda_melanoleuca
ENSDARG00000028848	lsm12a	100	85.204	ENSACIG00000008538	lsm12b	100	85.204	Amphilophus_citrinellus
ENSDARG00000028848	lsm12a	100	87.245	ENSAOCG00000021847	lsm12b	88	87.245	Amphiprion_ocellaris
ENSDARG00000028848	lsm12a	100	87.245	ENSAPEG00000002252	lsm12b	100	87.245	Amphiprion_percula
ENSDARG00000028848	lsm12a	100	85.714	ENSATEG00000005705	lsm12b	100	85.714	Anabas_testudineus
ENSDARG00000028848	lsm12a	100	77.041	ENSACAG00000004618	LSM12	100	77.041	Anolis_carolinensis
ENSDARG00000028848	lsm12a	100	77.041	ENSANAG00000029011	LSM12	100	77.041	Aotus_nancymaae
ENSDARG00000028848	lsm12a	100	85.714	ENSACLG00000026332	lsm12b	100	85.714	Astatotilapia_calliptera
ENSDARG00000028848	lsm12a	100	82.653	ENSAMXG00000036117	lsm12a	91	82.653	Astyanax_mexicanus
ENSDARG00000028848	lsm12a	100	85.714	ENSAMXG00000032952	lsm12b	100	85.714	Astyanax_mexicanus
ENSDARG00000028848	lsm12a	100	77.041	ENSBTAG00000016252	LSM12	100	77.041	Bos_taurus
ENSDARG00000028848	lsm12a	100	77.041	ENSCJAG00000048480	LSM12	100	77.041	Callithrix_jacchus
ENSDARG00000028848	lsm12a	100	77.041	ENSCAFG00000014379	LSM12	92	77.041	Canis_familiaris
ENSDARG00000028848	lsm12a	100	77.041	ENSCAFG00020012173	LSM12	100	77.041	Canis_lupus_dingo
ENSDARG00000028848	lsm12a	100	77.041	ENSCHIG00000018175	LSM12	100	77.041	Capra_hircus
ENSDARG00000028848	lsm12a	100	77.041	ENSTSYG00000036361	LSM12	100	77.041	Carlito_syrichta
ENSDARG00000028848	lsm12a	83	71.605	ENSCAPG00000009647	LSM12	89	71.605	Cavia_aperea
ENSDARG00000028848	lsm12a	100	76.020	ENSCPOG00000012860	LSM12	100	76.020	Cavia_porcellus
ENSDARG00000028848	lsm12a	100	77.041	ENSCCAG00000032905	LSM12	100	77.041	Cebus_capucinus
ENSDARG00000028848	lsm12a	100	77.041	ENSCATG00000030577	-	100	77.041	Cercocebus_atys
ENSDARG00000028848	lsm12a	100	76.531	ENSCLAG00000015759	LSM12	100	76.531	Chinchilla_lanigera
ENSDARG00000028848	lsm12a	100	76.531	ENSCSAG00000003486	LSM12	100	76.531	Chlorocebus_sabaeus
ENSDARG00000028848	lsm12a	56	76.147	ENSCHOG00000001198	LSM12	100	76.147	Choloepus_hoffmanni
ENSDARG00000028848	lsm12a	100	78.061	ENSCPBG00000027105	LSM12	100	78.061	Chrysemys_picta_bellii
ENSDARG00000028848	lsm12a	100	77.041	ENSCANG00000043328	LSM12	100	77.041	Colobus_angolensis_palliatus
ENSDARG00000028848	lsm12a	100	77.041	ENSCGRG00001002094	Lsm12	100	77.041	Cricetulus_griseus_chok1gshd
ENSDARG00000028848	lsm12a	89	68.391	ENSCGRG00000004316	Lsm12	98	68.391	Cricetulus_griseus_crigri
ENSDARG00000028848	lsm12a	100	86.735	ENSCSEG00000008434	lsm12b	100	86.735	Cynoglossus_semilaevis
ENSDARG00000028848	lsm12a	100	86.735	ENSCVAG00000008755	lsm12b	100	86.735	Cyprinodon_variegatus
ENSDARG00000028848	lsm12a	100	77.041	ENSDNOG00000002418	LSM12	91	77.041	Dasypus_novemcinctus
ENSDARG00000028848	lsm12a	100	77.041	ENSDORG00000016381	Lsm12	100	77.041	Dipodomys_ordii
ENSDARG00000028848	lsm12a	83	34.940	FBgn0030364	Lsm12	76	34.940	Drosophila_melanogaster
ENSDARG00000028848	lsm12a	73	31.013	FBgn0036057	CG14164	83	31.013	Drosophila_melanogaster
ENSDARG00000028848	lsm12a	100	76.531	ENSETEG00000008374	LSM12	100	76.531	Echinops_telfairi
ENSDARG00000028848	lsm12a	88	68.208	ENSETEG00000011012	-	99	68.208	Echinops_telfairi
ENSDARG00000028848	lsm12a	85	64.671	ENSEBUG00000016299	lsm12a	92	64.671	Eptatretus_burgeri
ENSDARG00000028848	lsm12a	100	77.041	ENSEASG00005010155	LSM12	100	77.041	Equus_asinus_asinus
ENSDARG00000028848	lsm12a	100	77.041	ENSECAG00000009071	LSM12	100	77.041	Equus_caballus
ENSDARG00000028848	lsm12a	78	74.510	ENSEEUG00000002419	-	100	74.510	Erinaceus_europaeus
ENSDARG00000028848	lsm12a	100	86.735	ENSELUG00000015538	lsm12b	100	82.143	Esox_lucius
ENSDARG00000028848	lsm12a	100	85.204	ENSELUG00000000256	-	100	85.204	Esox_lucius
ENSDARG00000028848	lsm12a	100	77.041	ENSFCAG00000037021	LSM12	100	77.041	Felis_catus
ENSDARG00000028848	lsm12a	76	75.676	ENSFDAG00000008954	LSM12	87	75.676	Fukomys_damarensis
ENSDARG00000028848	lsm12a	100	86.735	ENSFHEG00000019913	lsm12b	100	86.735	Fundulus_heteroclitus
ENSDARG00000028848	lsm12a	81	84.810	ENSGMOG00000015449	lsm12b	100	84.810	Gadus_morhua
ENSDARG00000028848	lsm12a	78	76.471	ENSGALG00000039803	LSM12	100	76.471	Gallus_gallus
ENSDARG00000028848	lsm12a	100	86.224	ENSGAFG00000011829	lsm12b	100	86.224	Gambusia_affinis
ENSDARG00000028848	lsm12a	81	84.810	ENSGACG00000003428	lsm12b	100	84.810	Gasterosteus_aculeatus
ENSDARG00000028848	lsm12a	100	78.061	ENSGAGG00000021965	LSM12	100	78.061	Gopherus_agassizii
ENSDARG00000028848	lsm12a	100	77.041	ENSGGOG00000010589	-	100	77.041	Gorilla_gorilla
ENSDARG00000028848	lsm12a	92	82.778	ENSHBUG00000007667	lsm12b	79	82.778	Haplochromis_burtoni
ENSDARG00000028848	lsm12a	100	77.041	ENSHGLG00000011411	LSM12	100	77.041	Heterocephalus_glaber_female
ENSDARG00000028848	lsm12a	79	74.675	ENSHGLG00100000241	LSM12	82	74.675	Heterocephalus_glaber_male
ENSDARG00000028848	lsm12a	100	88.776	ENSHCOG00000002094	lsm12b	100	88.776	Hippocampus_comes
ENSDARG00000028848	lsm12a	100	83.673	ENSIPUG00000014800	lsm12	100	83.673	Ictalurus_punctatus
ENSDARG00000028848	lsm12a	99	77.835	ENSIPUG00000008936	lsm12a	99	77.835	Ictalurus_punctatus
ENSDARG00000028848	lsm12a	100	77.041	ENSSTOG00000007403	LSM12	100	77.041	Ictidomys_tridecemlineatus
ENSDARG00000028848	lsm12a	80	66.667	ENSJJAG00000014652	-	95	66.667	Jaculus_jaculus
ENSDARG00000028848	lsm12a	96	68.421	ENSJJAG00000011793	-	100	68.421	Jaculus_jaculus
ENSDARG00000028848	lsm12a	100	76.531	ENSJJAG00000004364	-	100	76.531	Jaculus_jaculus
ENSDARG00000028848	lsm12a	85	89.222	ENSKMAG00000007704	lsm12b	56	89.222	Kryptolebias_marmoratus
ENSDARG00000028848	lsm12a	100	87.755	ENSLBEG00000027999	lsm12b	100	87.755	Labrus_bergylta
ENSDARG00000028848	lsm12a	100	78.061	ENSLACG00000015981	LSM12	100	78.061	Latimeria_chalumnae
ENSDARG00000028848	lsm12a	100	83.673	ENSLOCG00000013079	lsm12b	99	83.673	Lepisosteus_oculatus
ENSDARG00000028848	lsm12a	100	77.041	ENSLAFG00000005202	LSM12	100	77.041	Loxodonta_africana
ENSDARG00000028848	lsm12a	100	77.041	ENSMFAG00000031376	LSM12	100	77.041	Macaca_fascicularis
ENSDARG00000028848	lsm12a	100	77.041	ENSMMUG00000006804	LSM12	100	77.041	Macaca_mulatta
ENSDARG00000028848	lsm12a	100	77.041	ENSMNEG00000030594	-	100	77.041	Macaca_nemestrina
ENSDARG00000028848	lsm12a	100	77.041	ENSMLEG00000039934	LSM12	100	77.041	Mandrillus_leucophaeus
ENSDARG00000028848	lsm12a	100	87.755	ENSMAMG00000004279	lsm12b	100	87.755	Mastacembelus_armatus
ENSDARG00000028848	lsm12a	100	85.714	ENSMZEG00005005754	lsm12b	100	85.714	Maylandia_zebra
ENSDARG00000028848	lsm12a	100	76.531	ENSMICG00000037219	LSM12	100	76.531	Microcebus_murinus
ENSDARG00000028848	lsm12a	100	77.041	ENSMOCG00000019878	-	100	77.041	Microtus_ochrogaster
ENSDARG00000028848	lsm12a	100	67.347	ENSMOCG00000017015	-	86	67.347	Microtus_ochrogaster
ENSDARG00000028848	lsm12a	100	87.245	ENSMMOG00000020848	lsm12b	100	87.245	Mola_mola
ENSDARG00000028848	lsm12a	100	86.735	ENSMALG00000007578	lsm12b	100	86.735	Monopterus_albus
ENSDARG00000028848	lsm12a	100	77.041	MGP_CAROLIEiJ_G0017241	Lsm12	100	77.041	Mus_caroli
ENSDARG00000028848	lsm12a	100	77.041	ENSMUSG00000020922	Lsm12	100	77.041	Mus_musculus
ENSDARG00000028848	lsm12a	100	70.892	MGP_PahariEiJ_G0018371	Lsm12	100	75.676	Mus_pahari
ENSDARG00000028848	lsm12a	100	76.531	MGP_SPRETEiJ_G0018084	Lsm12	99	82.759	Mus_spretus
ENSDARG00000028848	lsm12a	100	77.551	ENSMLUG00000006391	LSM12	100	77.551	Myotis_lucifugus
ENSDARG00000028848	lsm12a	100	77.041	ENSNGAG00000001870	Lsm12	100	77.041	Nannospalax_galili
ENSDARG00000028848	lsm12a	100	52.709	ENSNGAG00000015429	-	100	52.709	Nannospalax_galili
ENSDARG00000028848	lsm12a	100	85.714	ENSNBRG00000006266	lsm12b	100	85.714	Neolamprologus_brichardi
ENSDARG00000028848	lsm12a	100	77.041	ENSNLEG00000005580	-	100	77.041	Nomascus_leucogenys
ENSDARG00000028848	lsm12a	85	78.313	ENSMEUG00000007501	-	100	78.313	Notamacropus_eugenii
ENSDARG00000028848	lsm12a	100	77.041	ENSOPRG00000008552	LSM12	100	77.041	Ochotona_princeps
ENSDARG00000028848	lsm12a	99	76.804	ENSODEG00000017998	-	99	76.804	Octodon_degus
ENSDARG00000028848	lsm12a	100	70.408	ENSODEG00000007886	-	74	70.408	Octodon_degus
ENSDARG00000028848	lsm12a	100	85.714	ENSONIG00000007933	lsm12b	100	85.714	Oreochromis_niloticus
ENSDARG00000028848	lsm12a	99	72.821	ENSOCUG00000024823	-	100	72.821	Oryctolagus_cuniculus
ENSDARG00000028848	lsm12a	100	75.377	ENSOCUG00000008566	-	100	75.377	Oryctolagus_cuniculus
ENSDARG00000028848	lsm12a	99	72.308	ENSOCUG00000027889	-	100	72.308	Oryctolagus_cuniculus
ENSDARG00000028848	lsm12a	99	72.821	ENSOCUG00000021254	-	100	72.821	Oryctolagus_cuniculus
ENSDARG00000028848	lsm12a	100	86.735	ENSORLG00000011310	lsm12b	100	86.735	Oryzias_latipes
ENSDARG00000028848	lsm12a	100	86.735	ENSORLG00020002060	lsm12b	92	86.735	Oryzias_latipes_hni
ENSDARG00000028848	lsm12a	100	86.735	ENSORLG00015001647	lsm12b	92	86.735	Oryzias_latipes_hsok
ENSDARG00000028848	lsm12a	100	86.735	ENSOMEG00000006184	lsm12b	92	86.735	Oryzias_melastigma
ENSDARG00000028848	lsm12a	100	76.531	ENSOGAG00000010489	LSM12	100	76.531	Otolemur_garnettii
ENSDARG00000028848	lsm12a	100	74.257	ENSOARG00000006589	LSM12	100	74.257	Ovis_aries
ENSDARG00000028848	lsm12a	100	67.857	ENSPPAG00000034974	-	100	67.857	Pan_paniscus
ENSDARG00000028848	lsm12a	100	77.041	ENSPPRG00000023420	LSM12	100	77.041	Panthera_pardus
ENSDARG00000028848	lsm12a	78	75.163	ENSPTIG00000012704	-	82	75.163	Panthera_tigris_altaica
ENSDARG00000028848	lsm12a	73	75.000	ENSPTIG00000014850	-	100	75.000	Panthera_tigris_altaica
ENSDARG00000028848	lsm12a	100	77.041	ENSPTRG00000009261	LSM12	100	77.041	Pan_troglodytes
ENSDARG00000028848	lsm12a	100	77.041	ENSPANG00000021315	-	100	77.041	Papio_anubis
ENSDARG00000028848	lsm12a	100	83.673	ENSPKIG00000017932	-	100	83.673	Paramormyrops_kingsleyae
ENSDARG00000028848	lsm12a	100	87.755	ENSPKIG00000021058	lsm12b	100	87.755	Paramormyrops_kingsleyae
ENSDARG00000028848	lsm12a	100	85.714	ENSPMGG00000021344	lsm12b	100	85.714	Periophthalmus_magnuspinnatus
ENSDARG00000028848	lsm12a	100	77.041	ENSPEMG00000012199	Lsm12	100	77.041	Peromyscus_maniculatus_bairdii
ENSDARG00000028848	lsm12a	89	68.571	ENSPMAG00000005461	lsm12a	99	68.571	Petromyzon_marinus
ENSDARG00000028848	lsm12a	100	76.020	ENSPCIG00000020244	LSM12	100	76.020	Phascolarctos_cinereus
ENSDARG00000028848	lsm12a	100	86.735	ENSPFOG00000015930	lsm12b	100	86.735	Poecilia_formosa
ENSDARG00000028848	lsm12a	100	86.735	ENSPLAG00000021089	lsm12b	100	86.735	Poecilia_latipinna
ENSDARG00000028848	lsm12a	100	86.735	ENSPMEG00000012961	lsm12b	100	86.735	Poecilia_mexicana
ENSDARG00000028848	lsm12a	87	84.795	ENSPREG00000010236	lsm12b	95	84.795	Poecilia_reticulata
ENSDARG00000028848	lsm12a	100	77.041	ENSPPYG00000008344	LSM12	100	77.041	Pongo_abelii
ENSDARG00000028848	lsm12a	81	78.616	ENSPCAG00000008790	LSM12	100	78.616	Procavia_capensis
ENSDARG00000028848	lsm12a	100	77.041	ENSPCOG00000027951	LSM12	100	77.041	Propithecus_coquereli
ENSDARG00000028848	lsm12a	100	76.531	ENSPVAG00000013706	LSM12	100	76.531	Pteropus_vampyrus
ENSDARG00000028848	lsm12a	100	85.714	ENSPNYG00000003386	lsm12b	100	85.714	Pundamilia_nyererei
ENSDARG00000028848	lsm12a	100	84.694	ENSPNAG00000004186	lsm12b	100	84.694	Pygocentrus_nattereri
ENSDARG00000028848	lsm12a	100	83.163	ENSPNAG00000018435	lsm12a	100	83.163	Pygocentrus_nattereri
ENSDARG00000028848	lsm12a	100	77.041	ENSRNOG00000020894	Lsm12	100	77.041	Rattus_norvegicus
ENSDARG00000028848	lsm12a	100	77.041	ENSRBIG00000027910	LSM12	100	77.041	Rhinopithecus_bieti
ENSDARG00000028848	lsm12a	100	77.041	ENSRROG00000045530	-	100	77.041	Rhinopithecus_roxellana
ENSDARG00000028848	lsm12a	100	77.041	ENSSBOG00000025310	LSM12	100	77.041	Saimiri_boliviensis_boliviensis
ENSDARG00000028848	lsm12a	81	72.785	ENSSHAG00000014914	LSM12	100	72.785	Sarcophilus_harrisii
ENSDARG00000028848	lsm12a	100	88.265	ENSSFOG00015020392	lsm12a	100	88.265	Scleropages_formosus
ENSDARG00000028848	lsm12a	100	85.204	ENSSFOG00015009612	lsm12	100	85.204	Scleropages_formosus
ENSDARG00000028848	lsm12a	100	86.735	ENSSMAG00000008089	lsm12b	100	86.735	Scophthalmus_maximus
ENSDARG00000028848	lsm12a	100	86.735	ENSSDUG00000012711	lsm12b	100	86.735	Seriola_dumerili
ENSDARG00000028848	lsm12a	100	86.735	ENSSLDG00000007404	lsm12b	100	86.735	Seriola_lalandi_dorsalis
ENSDARG00000028848	lsm12a	78	75.163	ENSSARG00000005537	LSM12	100	75.163	Sorex_araneus
ENSDARG00000028848	lsm12a	100	77.551	ENSSPUG00000011984	LSM12	100	77.551	Sphenodon_punctatus
ENSDARG00000028848	lsm12a	100	87.245	ENSSPAG00000017058	lsm12b	100	87.245	Stegastes_partitus
ENSDARG00000028848	lsm12a	100	77.041	ENSSSCG00000032394	LSM12	100	77.041	Sus_scrofa
ENSDARG00000028848	lsm12a	100	86.224	ENSTRUG00000007121	lsm12b	100	86.224	Takifugu_rubripes
ENSDARG00000028848	lsm12a	100	87.245	ENSTNIG00000014436	lsm12b	100	87.245	Tetraodon_nigroviridis
ENSDARG00000028848	lsm12a	100	76.531	ENSTBEG00000012523	-	100	76.531	Tupaia_belangeri
ENSDARG00000028848	lsm12a	100	74.490	ENSTBEG00000012392	-	100	74.490	Tupaia_belangeri
ENSDARG00000028848	lsm12a	100	77.041	ENSTTRG00000010433	LSM12	100	77.041	Tursiops_truncatus
ENSDARG00000028848	lsm12a	100	77.041	ENSUAMG00000006313	LSM12	100	77.041	Ursus_americanus
ENSDARG00000028848	lsm12a	81	72.785	ENSUMAG00000012987	LSM12	90	72.785	Ursus_maritimus
ENSDARG00000028848	lsm12a	100	71.429	ENSVPAG00000011145	LSM12	100	71.429	Vicugna_pacos
ENSDARG00000028848	lsm12a	100	77.041	ENSVVUG00000017581	LSM12	100	77.041	Vulpes_vulpes
ENSDARG00000028848	lsm12a	82	55.280	ENSXETG00000003371	lsm12	78	55.280	Xenopus_tropicalis
ENSDARG00000028848	lsm12a	100	86.224	ENSXCOG00000003994	lsm12b	100	86.224	Xiphophorus_couchianus
ENSDARG00000028848	lsm12a	100	86.224	ENSXMAG00000020950	lsm12b	100	86.224	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process