EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000028971 (Gene tree)
Gene ID: 436657
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 37783 bases
Position: chr20:50052116-50089898
Accession: ZDB-GENE-040718-79
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000122122	Beta-Casp	PF10996.8	1.9e-20	1	1
ENSDARP00000047211	Beta-Casp	PF10996.8	3.4e-20	1	1
ENSDARP00000156082	Beta-Casp	PF10996.8	3.4e-20	1	1
ENSDARP00000047211	Lactamase_B	PF00753.27	2e-05	1	1
ENSDARP00000156082	Lactamase_B	PF00753.27	2e-05	1	1
ENSDARP00000122122	RMMBL	PF07521.12	9.9e-15	1	1
ENSDARP00000047211	RMMBL	PF07521.12	1.6e-14	1	1
ENSDARP00000156082	RMMBL	PF07521.12	1.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000137725	-	1938	-	ENSDARP00000122122	570 (aa)	-	F1QX42
ENSDART00000047212	-	2675	XM_017352464	ENSDARP00000047211	790 (aa)	XP_017207953	F1QVV4
ENSDART00000188799	-	6406	-	ENSDARP00000156082	790 (aa)	-	F1QVV4

Gene Model

Click here to download ENSDARG00000028971's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000028971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000028971	cpsf2	100	85.696	ENSG00000165934	CPSF2	100	90.000	Homo_sapiens
ENSDARG00000028971	cpsf2	100	88.481	ENSAPOG00000001242	cpsf2	100	88.481	Acanthochromis_polyacanthus
ENSDARG00000028971	cpsf2	61	80.460	ENSAMEG00000013790	-	100	80.460	Ailuropoda_melanoleuca
ENSDARG00000028971	cpsf2	100	88.875	ENSACIG00000009331	cpsf2	100	88.875	Amphilophus_citrinellus
ENSDARG00000028971	cpsf2	100	88.608	ENSAOCG00000014095	cpsf2	100	88.608	Amphiprion_ocellaris
ENSDARG00000028971	cpsf2	100	88.608	ENSAPEG00000009158	cpsf2	100	88.608	Amphiprion_percula
ENSDARG00000028971	cpsf2	99	86.292	ENSATEG00000017644	cpsf2	99	86.644	Anabas_testudineus
ENSDARG00000028971	cpsf2	100	85.227	ENSAPLG00000006330	CPSF2	100	85.227	Anas_platyrhynchos
ENSDARG00000028971	cpsf2	100	85.570	ENSACAG00000009245	CPSF2	100	85.570	Anolis_carolinensis
ENSDARG00000028971	cpsf2	100	85.696	ENSANAG00000022915	CPSF2	100	85.696	Aotus_nancymaae
ENSDARG00000028971	cpsf2	100	91.392	ENSAMXG00000018696	cpsf2	100	91.392	Astyanax_mexicanus
ENSDARG00000028971	cpsf2	100	85.696	ENSBTAG00000010227	CPSF2	100	85.696	Bos_taurus
ENSDARG00000028971	cpsf2	100	42.690	WBGene00017313	cpsf-2	100	42.907	Caenorhabditis_elegans
ENSDARG00000028971	cpsf2	100	85.696	ENSCJAG00000018069	CPSF2	100	85.696	Callithrix_jacchus
ENSDARG00000028971	cpsf2	100	85.570	ENSCAFG00000010909	CPSF2	100	85.570	Canis_familiaris
ENSDARG00000028971	cpsf2	100	85.570	ENSCAFG00020020670	CPSF2	100	85.570	Canis_lupus_dingo
ENSDARG00000028971	cpsf2	100	85.696	ENSCHIG00000023848	CPSF2	100	85.696	Capra_hircus
ENSDARG00000028971	cpsf2	100	85.570	ENSTSYG00000009036	CPSF2	100	85.570	Carlito_syrichta
ENSDARG00000028971	cpsf2	61	80.460	ENSCAPG00000004833	-	100	80.460	Cavia_aperea
ENSDARG00000028971	cpsf2	100	85.696	ENSCPOG00000010899	CPSF2	100	85.696	Cavia_porcellus
ENSDARG00000028971	cpsf2	100	85.696	ENSCCAG00000028088	CPSF2	100	85.696	Cebus_capucinus
ENSDARG00000028971	cpsf2	100	85.696	ENSCATG00000030132	CPSF2	100	85.696	Cercocebus_atys
ENSDARG00000028971	cpsf2	100	85.841	ENSCLAG00000012404	CPSF2	100	85.841	Chinchilla_lanigera
ENSDARG00000028971	cpsf2	100	85.696	ENSCSAG00000011300	CPSF2	100	85.696	Chlorocebus_sabaeus
ENSDARG00000028971	cpsf2	100	80.380	ENSCHOG00000012904	CPSF2	100	80.380	Choloepus_hoffmanni
ENSDARG00000028971	cpsf2	100	85.823	ENSCPBG00000008766	CPSF2	97	85.823	Chrysemys_picta_bellii
ENSDARG00000028971	cpsf2	100	53.894	ENSCING00000007881	-	100	53.894	Ciona_intestinalis
ENSDARG00000028971	cpsf2	99	82.777	ENSCANG00000041651	CPSF2	100	85.270	Colobus_angolensis_palliatus
ENSDARG00000028971	cpsf2	100	85.316	ENSCGRG00001006901	Cpsf2	100	85.316	Cricetulus_griseus_chok1gshd
ENSDARG00000028971	cpsf2	100	85.316	ENSCGRG00000012416	Cpsf2	100	85.316	Cricetulus_griseus_crigri
ENSDARG00000028971	cpsf2	100	87.215	ENSCSEG00000004116	cpsf2	100	87.215	Cynoglossus_semilaevis
ENSDARG00000028971	cpsf2	100	87.848	ENSCVAG00000000095	cpsf2	100	87.848	Cyprinodon_variegatus
ENSDARG00000028971	cpsf2	100	85.696	ENSDNOG00000042757	CPSF2	100	85.696	Dasypus_novemcinctus
ENSDARG00000028971	cpsf2	100	85.696	ENSDORG00000013709	Cpsf2	100	85.696	Dipodomys_ordii
ENSDARG00000028971	cpsf2	100	53.523	FBgn0027873	Cpsf100	100	53.894	Drosophila_melanogaster
ENSDARG00000028971	cpsf2	100	77.876	ENSETEG00000012123	CPSF2	100	77.876	Echinops_telfairi
ENSDARG00000028971	cpsf2	60	74.487	ENSEBUG00000012098	cpsf2	93	76.284	Eptatretus_burgeri
ENSDARG00000028971	cpsf2	89	92.150	ENSEASG00005021193	CPSF2	100	92.150	Equus_asinus_asinus
ENSDARG00000028971	cpsf2	100	85.570	ENSECAG00000023935	CPSF2	100	85.570	Equus_caballus
ENSDARG00000028971	cpsf2	100	87.453	ENSELUG00000008442	cpsf2	100	87.453	Esox_lucius
ENSDARG00000028971	cpsf2	100	85.570	ENSFCAG00000007886	CPSF2	100	85.570	Felis_catus
ENSDARG00000028971	cpsf2	100	85.316	ENSFALG00000002412	CPSF2	100	85.316	Ficedula_albicollis
ENSDARG00000028971	cpsf2	100	85.570	ENSFDAG00000006327	CPSF2	100	85.570	Fukomys_damarensis
ENSDARG00000028971	cpsf2	97	87.063	ENSFHEG00000015465	cpsf2	98	87.843	Fundulus_heteroclitus
ENSDARG00000028971	cpsf2	100	86.055	ENSGMOG00000008761	cpsf2	100	86.055	Gadus_morhua
ENSDARG00000028971	cpsf2	100	85.443	ENSGALG00000010783	CPSF2	100	85.570	Gallus_gallus
ENSDARG00000028971	cpsf2	100	87.848	ENSGAFG00000001407	cpsf2	100	87.848	Gambusia_affinis
ENSDARG00000028971	cpsf2	100	87.975	ENSGACG00000008418	cpsf2	100	87.975	Gasterosteus_aculeatus
ENSDARG00000028971	cpsf2	100	85.696	ENSGAGG00000008287	CPSF2	100	85.696	Gopherus_agassizii
ENSDARG00000028971	cpsf2	100	85.696	ENSGGOG00000011799	CPSF2	100	85.696	Gorilla_gorilla
ENSDARG00000028971	cpsf2	100	87.975	ENSHBUG00000023466	cpsf2	100	87.975	Haplochromis_burtoni
ENSDARG00000028971	cpsf2	100	85.696	ENSHGLG00000018311	CPSF2	100	85.696	Heterocephalus_glaber_female
ENSDARG00000028971	cpsf2	100	85.696	ENSHGLG00100016460	CPSF2	100	85.696	Heterocephalus_glaber_male
ENSDARG00000028971	cpsf2	100	86.962	ENSHCOG00000019527	cpsf2	98	86.962	Hippocampus_comes
ENSDARG00000028971	cpsf2	100	90.127	ENSIPUG00000020857	cpsf2	100	90.127	Ictalurus_punctatus
ENSDARG00000028971	cpsf2	100	85.696	ENSSTOG00000009528	CPSF2	100	85.696	Ictidomys_tridecemlineatus
ENSDARG00000028971	cpsf2	100	85.570	ENSJJAG00000017925	Cpsf2	100	85.570	Jaculus_jaculus
ENSDARG00000028971	cpsf2	100	86.962	ENSKMAG00000019429	cpsf2	100	86.962	Kryptolebias_marmoratus
ENSDARG00000028971	cpsf2	99	85.764	ENSLBEG00000011585	cpsf2	100	87.717	Labrus_bergylta
ENSDARG00000028971	cpsf2	100	83.186	ENSLACG00000019024	CPSF2	100	83.565	Latimeria_chalumnae
ENSDARG00000028971	cpsf2	100	88.889	ENSLOCG00000014102	cpsf2	100	88.889	Lepisosteus_oculatus
ENSDARG00000028971	cpsf2	100	85.516	ENSLAFG00000004891	CPSF2	100	85.516	Loxodonta_africana
ENSDARG00000028971	cpsf2	100	85.696	ENSMFAG00000041212	CPSF2	100	85.696	Macaca_fascicularis
ENSDARG00000028971	cpsf2	100	85.696	ENSMMUG00000000699	CPSF2	100	85.696	Macaca_mulatta
ENSDARG00000028971	cpsf2	100	85.696	ENSMNEG00000031584	CPSF2	100	85.696	Macaca_nemestrina
ENSDARG00000028971	cpsf2	100	85.696	ENSMLEG00000029394	CPSF2	100	85.696	Mandrillus_leucophaeus
ENSDARG00000028971	cpsf2	100	87.722	ENSMAMG00000004235	cpsf2	100	87.722	Mastacembelus_armatus
ENSDARG00000028971	cpsf2	100	88.101	ENSMZEG00005001769	cpsf2	100	88.101	Maylandia_zebra
ENSDARG00000028971	cpsf2	100	85.461	ENSMGAG00000013122	CPSF2	100	85.588	Meleagris_gallopavo
ENSDARG00000028971	cpsf2	100	85.316	ENSMAUG00000015160	Cpsf2	100	85.316	Mesocricetus_auratus
ENSDARG00000028971	cpsf2	100	85.570	ENSMICG00000016441	CPSF2	100	85.570	Microcebus_murinus
ENSDARG00000028971	cpsf2	100	85.316	ENSMOCG00000015372	Cpsf2	100	85.316	Microtus_ochrogaster
ENSDARG00000028971	cpsf2	100	83.291	ENSMMOG00000015590	cpsf2	100	83.291	Mola_mola
ENSDARG00000028971	cpsf2	100	85.823	ENSMODG00000002042	CPSF2	100	85.823	Monodelphis_domestica
ENSDARG00000028971	cpsf2	100	84.557	ENSMALG00000022275	cpsf2	100	84.557	Monopterus_albus
ENSDARG00000028971	cpsf2	100	85.570	ENSMUSG00000041781	Cpsf2	100	85.570	Mus_musculus
ENSDARG00000028971	cpsf2	100	85.443	MGP_PahariEiJ_G0029791	Cpsf2	100	85.443	Mus_pahari
ENSDARG00000028971	cpsf2	100	85.570	MGP_SPRETEiJ_G0018877	Cpsf2	100	85.570	Mus_spretus
ENSDARG00000028971	cpsf2	100	85.570	ENSMPUG00000007617	CPSF2	98	85.570	Mustela_putorius_furo
ENSDARG00000028971	cpsf2	100	85.101	ENSMLUG00000005570	CPSF2	100	85.101	Myotis_lucifugus
ENSDARG00000028971	cpsf2	100	85.570	ENSNGAG00000020312	Cpsf2	100	85.570	Nannospalax_galili
ENSDARG00000028971	cpsf2	100	88.228	ENSNBRG00000022402	cpsf2	100	88.228	Neolamprologus_brichardi
ENSDARG00000028971	cpsf2	100	85.063	ENSNLEG00000017132	CPSF2	100	85.063	Nomascus_leucogenys
ENSDARG00000028971	cpsf2	88	98.876	ENSMEUG00000008138	CPSF2	91	95.146	Notamacropus_eugenii
ENSDARG00000028971	cpsf2	99	76.801	ENSOPRG00000008484	-	100	80.676	Ochotona_princeps
ENSDARG00000028971	cpsf2	100	85.316	ENSODEG00000008682	CPSF2	100	85.316	Octodon_degus
ENSDARG00000028971	cpsf2	100	88.734	ENSONIG00000005901	cpsf2	100	88.734	Oreochromis_niloticus
ENSDARG00000028971	cpsf2	100	85.985	ENSOANG00000003822	CPSF2	100	85.985	Ornithorhynchus_anatinus
ENSDARG00000028971	cpsf2	100	85.570	ENSOCUG00000005713	CPSF2	100	85.570	Oryctolagus_cuniculus
ENSDARG00000028971	cpsf2	99	85.237	ENSORLG00000011628	cpsf2	100	82.152	Oryzias_latipes
ENSDARG00000028971	cpsf2	100	87.468	ENSORLG00020016980	cpsf2	100	87.468	Oryzias_latipes_hni
ENSDARG00000028971	cpsf2	100	87.468	ENSORLG00015011910	cpsf2	100	87.468	Oryzias_latipes_hsok
ENSDARG00000028971	cpsf2	100	87.215	ENSOMEG00000022876	cpsf2	100	87.215	Oryzias_melastigma
ENSDARG00000028971	cpsf2	61	75.645	ENSOGAG00000008605	-	100	75.645	Otolemur_garnettii
ENSDARG00000028971	cpsf2	100	82.702	ENSOARG00000012889	CPSF2	100	82.702	Ovis_aries
ENSDARG00000028971	cpsf2	100	85.696	ENSPPAG00000039666	CPSF2	100	85.696	Pan_paniscus
ENSDARG00000028971	cpsf2	99	85.551	ENSPPRG00000010869	CPSF2	100	85.551	Panthera_pardus
ENSDARG00000028971	cpsf2	100	85.570	ENSPTIG00000021202	CPSF2	100	85.570	Panthera_tigris_altaica
ENSDARG00000028971	cpsf2	100	85.696	ENSPTRG00000006651	CPSF2	100	85.696	Pan_troglodytes
ENSDARG00000028971	cpsf2	100	85.696	ENSPANG00000017417	CPSF2	100	85.696	Papio_anubis
ENSDARG00000028971	cpsf2	99	88.225	ENSPKIG00000021453	cpsf2	100	85.063	Paramormyrops_kingsleyae
ENSDARG00000028971	cpsf2	100	85.823	ENSPSIG00000006289	CPSF2	100	85.823	Pelodiscus_sinensis
ENSDARG00000028971	cpsf2	99	82.343	ENSPMGG00000002511	cpsf2	99	82.890	Periophthalmus_magnuspinnatus
ENSDARG00000028971	cpsf2	100	85.443	ENSPEMG00000007917	Cpsf2	100	85.443	Peromyscus_maniculatus_bairdii
ENSDARG00000028971	cpsf2	100	73.183	ENSPMAG00000006205	cpsf2	100	73.091	Petromyzon_marinus
ENSDARG00000028971	cpsf2	100	85.823	ENSPCIG00000011393	CPSF2	100	85.823	Phascolarctos_cinereus
ENSDARG00000028971	cpsf2	100	87.975	ENSPFOG00000018648	cpsf2	100	87.975	Poecilia_formosa
ENSDARG00000028971	cpsf2	100	87.975	ENSPLAG00000019199	cpsf2	99	87.975	Poecilia_latipinna
ENSDARG00000028971	cpsf2	99	85.764	ENSPMEG00000012100	cpsf2	100	87.717	Poecilia_mexicana
ENSDARG00000028971	cpsf2	100	87.722	ENSPREG00000008960	cpsf2	100	87.722	Poecilia_reticulata
ENSDARG00000028971	cpsf2	88	80.754	ENSPPYG00000029685	-	100	80.754	Pongo_abelii
ENSDARG00000028971	cpsf2	100	85.732	ENSPCAG00000012477	CPSF2	100	85.732	Procavia_capensis
ENSDARG00000028971	cpsf2	100	85.823	ENSPCOG00000026387	CPSF2	100	85.823	Propithecus_coquereli
ENSDARG00000028971	cpsf2	64	92.857	ENSPVAG00000004223	CPSF2	65	92.857	Pteropus_vampyrus
ENSDARG00000028971	cpsf2	100	88.116	ENSPNYG00000023356	cpsf2	100	88.116	Pundamilia_nyererei
ENSDARG00000028971	cpsf2	100	91.899	ENSPNAG00000001849	cpsf2	100	91.899	Pygocentrus_nattereri
ENSDARG00000028971	cpsf2	100	85.570	ENSRNOG00000005733	Cpsf2	100	85.570	Rattus_norvegicus
ENSDARG00000028971	cpsf2	100	85.696	ENSRBIG00000044792	CPSF2	100	85.696	Rhinopithecus_bieti
ENSDARG00000028971	cpsf2	100	85.696	ENSRROG00000034875	CPSF2	100	85.696	Rhinopithecus_roxellana
ENSDARG00000028971	cpsf2	100	85.696	ENSSBOG00000024571	CPSF2	100	85.696	Saimiri_boliviensis_boliviensis
ENSDARG00000028971	cpsf2	100	85.696	ENSSHAG00000010458	CPSF2	100	85.696	Sarcophilus_harrisii
ENSDARG00000028971	cpsf2	100	89.241	ENSSFOG00015002117	cpsf2	100	89.747	Scleropages_formosus
ENSDARG00000028971	cpsf2	100	87.468	ENSSMAG00000002001	cpsf2	100	87.722	Scophthalmus_maximus
ENSDARG00000028971	cpsf2	100	88.734	ENSSDUG00000004084	cpsf2	100	88.734	Seriola_dumerili
ENSDARG00000028971	cpsf2	100	88.354	ENSSLDG00000024330	cpsf2	100	88.354	Seriola_lalandi_dorsalis
ENSDARG00000028971	cpsf2	59	98.387	ENSSARG00000009784	-	63	97.030	Sorex_araneus
ENSDARG00000028971	cpsf2	100	84.937	ENSSPUG00000013485	CPSF2	100	84.937	Sphenodon_punctatus
ENSDARG00000028971	cpsf2	100	88.354	ENSSPAG00000013284	cpsf2	100	88.354	Stegastes_partitus
ENSDARG00000028971	cpsf2	100	85.570	ENSSSCG00000002447	CPSF2	100	85.570	Sus_scrofa
ENSDARG00000028971	cpsf2	54	77.994	ENSTGUG00000016355	-	100	77.994	Taeniopygia_guttata
ENSDARG00000028971	cpsf2	100	85.190	ENSTGUG00000012571	-	100	85.190	Taeniopygia_guttata
ENSDARG00000028971	cpsf2	100	88.101	ENSTRUG00000003742	cpsf2	100	88.101	Takifugu_rubripes
ENSDARG00000028971	cpsf2	100	86.995	ENSTNIG00000012228	cpsf2	100	87.879	Tetraodon_nigroviridis
ENSDARG00000028971	cpsf2	91	83.550	ENSTBEG00000004530	CPSF2	94	83.550	Tupaia_belangeri
ENSDARG00000028971	cpsf2	88	93.750	ENSTTRG00000008697	CPSF2	88	93.750	Tursiops_truncatus
ENSDARG00000028971	cpsf2	100	85.696	ENSUAMG00000028071	CPSF2	100	85.696	Ursus_americanus
ENSDARG00000028971	cpsf2	100	85.696	ENSUMAG00000005029	CPSF2	100	85.696	Ursus_maritimus
ENSDARG00000028971	cpsf2	99	85.551	ENSVPAG00000003503	CPSF2	100	85.551	Vicugna_pacos
ENSDARG00000028971	cpsf2	100	85.570	ENSVVUG00000024642	CPSF2	100	85.570	Vulpes_vulpes
ENSDARG00000028971	cpsf2	100	83.944	ENSXETG00000010289	cpsf2	100	83.944	Xenopus_tropicalis
ENSDARG00000028971	cpsf2	100	87.975	ENSXCOG00000001764	cpsf2	100	87.975	Xiphophorus_couchianus
ENSDARG00000028971	cpsf2	100	88.101	ENSXMAG00000017048	cpsf2	100	88.101	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	IEA	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0006379	mRNA cleavage	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process