EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000028976 (Gene tree)
Gene ID
337487
Gene Symbol
pus3
Alias
fj78b12|wu:fj78b12|zgc:56653
Full Name
pseudouridylate synthase 3
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
12257 bases
Position
chr24:36317544-36329800
Accession
ZDB-GENE-030131-9433
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000048639PseudoU_synth_1PF01416.204.2e-2911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000154242-854--- (aa)--
ENSDART00000154803-650--- (aa)--
ENSDART00000048640-1860-ENSDARP00000048639460 (aa)-F1QBS4
ENSDART00000156096-722-ENSDARP00000127947191 (aa)-X1WCK3
Gene Model
Click here to download ENSDARG00000028976's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000028976's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000028976pus39354.241ENSG00000110060PUS39456.024Homo_sapiens
ENSDARG00000028976pus39670.655ENSAPOG00000019483pus39972.009Acanthochromis_polyacanthus
ENSDARG00000028976pus39352.539ENSAMEG00000000144PUS38953.196Ailuropoda_melanoleuca
ENSDARG00000028976pus37970.181ENSACIG00000024479pus310077.193Amphilophus_citrinellus
ENSDARG00000028976pus39966.387ENSAOCG00000006589pus39967.653Amphiprion_ocellaris
ENSDARG00000028976pus39966.667ENSAPEG00000014617pus39968.365Amphiprion_percula
ENSDARG00000028976pus39570.536ENSATEG00000022731pus39571.652Anabas_testudineus
ENSDARG00000028976pus38955.349ENSAPLG00000013285PUS39855.349Anas_platyrhynchos
ENSDARG00000028976pus39649.892ENSACAG00000000186PUS39849.892Anolis_carolinensis
ENSDARG00000028976pus39354.709ENSANAG00000035614PUS38855.452Aotus_nancymaae
ENSDARG00000028976pus39866.738ENSACLG00000007356pus39967.804Astatotilapia_calliptera
ENSDARG00000028976pus39771.642ENSAMXG00000019534pus39871.642Astyanax_mexicanus
ENSDARG00000028976pus310050.415ENSBTAG00000014339PUS38953.563Bos_taurus
ENSDARG00000028976pus38037.076WBGene00006473tag-1249636.573Caenorhabditis_elegans
ENSDARG00000028976pus39354.709ENSCJAG00000046645PUS38855.452Callithrix_jacchus
ENSDARG00000028976pus38953.811ENSCAFG00000010534PUS38853.704Canis_familiaris
ENSDARG00000028976pus38953.811ENSCAFG00020010659PUS38853.704Canis_lupus_dingo
ENSDARG00000028976pus39353.125ENSCHIG00000012260PUS38953.811Capra_hircus
ENSDARG00000028976pus39055.530ENSTSYG00000014744PUS38855.427Carlito_syrichta
ENSDARG00000028976pus36030.132ENSTSYG00000032605PUS17230.132Carlito_syrichta
ENSDARG00000028976pus39353.125ENSCAPG00000012231PUS38953.811Cavia_aperea
ENSDARG00000028976pus39353.125ENSCPOG00000032587PUS38953.811Cavia_porcellus
ENSDARG00000028976pus39354.709ENSCCAG00000035999PUS38955.452Cebus_capucinus
ENSDARG00000028976pus39354.464ENSCATG00000043123PUS38955.196Cercocebus_atys
ENSDARG00000028976pus39253.915ENSCLAG00000014947PUS38854.630Chinchilla_lanigera
ENSDARG00000028976pus39354.464ENSCSAG00000002281PUS38955.427Chlorocebus_sabaeus
ENSDARG00000028976pus38154.762ENSCHOG00000008442PUS39754.762Choloepus_hoffmanni
ENSDARG00000028976pus37734.586ENSCING00000009062-7734.586Ciona_intestinalis
ENSDARG00000028976pus38434.615ENSCSAVG00000002211-9434.615Ciona_savignyi
ENSDARG00000028976pus39354.464ENSCANG00000038729PUS38955.196Colobus_angolensis_palliatus
ENSDARG00000028976pus36030.195ENSCGRG00001019592Pus16330.195Cricetulus_griseus_chok1gshd
ENSDARG00000028976pus39254.382ENSCGRG00001019842Pus39451.797Cricetulus_griseus_chok1gshd
ENSDARG00000028976pus39253.933ENSCGRG00000010155Pus39451.374Cricetulus_griseus_crigri
ENSDARG00000028976pus36030.195ENSCGRG00000004048Pus16330.195Cricetulus_griseus_crigri
ENSDARG00000028976pus39866.740ENSCSEG00000007948pus39967.615Cynoglossus_semilaevis
ENSDARG00000028976pus39469.757ENSCVAG00000022150pus39569.757Cyprinodon_variegatus
ENSDARG00000028976pus36630.514ENSCVAG00000001265pus17130.514Cyprinodon_variegatus
ENSDARG00000028976pus39751.288ENSDNOG00000040719PUS38952.887Dasypus_novemcinctus
ENSDARG00000028976pus39951.153ENSDORG00000001819Pus38854.651Dipodomys_ordii
ENSDARG00000028976pus38341.860FBgn0034703CG30458341.492Drosophila_melanogaster
ENSDARG00000028976pus39946.392ENSETEG00000013067PUS38849.543Echinops_telfairi
ENSDARG00000028976pus38851.012ENSEBUG00000002154pus36451.012Eptatretus_burgeri
ENSDARG00000028976pus39752.564ENSEASG00005023003PUS38954.253Equus_asinus_asinus
ENSDARG00000028976pus36030.392ENSEASG00005016535PUS16130.392Equus_asinus_asinus
ENSDARG00000028976pus39752.564ENSECAG00000007581PUS38954.253Equus_caballus
ENSDARG00000028976pus36030.392ENSECAG00000006965PUS16730.392Equus_caballus
ENSDARG00000028976pus39252.027ENSEEUG00000010543PUS38952.656Erinaceus_europaeus
ENSDARG00000028976pus39573.756ENSELUG00000004425pus39774.887Esox_lucius
ENSDARG00000028976pus39850.524ENSFCAG00000005340PUS38753.953Felis_catus
ENSDARG00000028976pus39054.670ENSFALG00000005159PUS39054.839Ficedula_albicollis
ENSDARG00000028976pus39951.351ENSFDAG00000020745PUS39552.553Fukomys_damarensis
ENSDARG00000028976pus39470.852ENSFHEG00000010984pus38870.852Fundulus_heteroclitus
ENSDARG00000028976pus39566.213ENSGMOG00000004534pus39966.213Gadus_morhua
ENSDARG00000028976pus39056.452ENSGALG00000000962PUS39356.744Gallus_gallus
ENSDARG00000028976pus39668.559ENSGAFG00000005615pus39668.559Gambusia_affinis
ENSDARG00000028976pus39471.167ENSGACG00000002125pus39472.082Gasterosteus_aculeatus
ENSDARG00000028976pus39254.788ENSGAGG00000000160PUS38755.658Gopherus_agassizii
ENSDARG00000028976pus39354.911ENSGGOG00000015047PUS38955.658Gorilla_gorilla
ENSDARG00000028976pus39866.098ENSHBUG00000016532pus39967.164Haplochromis_burtoni
ENSDARG00000028976pus35541.445ENSHGLG00000016285-9443.775Heterocephalus_glaber_female
ENSDARG00000028976pus36360.000ENSHGLG00000015753-8160.000Heterocephalus_glaber_female
ENSDARG00000028976pus39948.298ENSHGLG00000006599-8450.957Heterocephalus_glaber_female
ENSDARG00000028976pus39347.706ENSHGLG00000018861-8949.272Heterocephalus_glaber_female
ENSDARG00000028976pus39653.118ENSHGLG00000000565PUS39553.118Heterocephalus_glaber_female
ENSDARG00000028976pus38049.067ENSHGLG00100011339-8250.997Heterocephalus_glaber_male
ENSDARG00000028976pus37253.254ENSHGLG00100007519-7653.254Heterocephalus_glaber_male
ENSDARG00000028976pus39649.149ENSHGLG00100014825-8851.034Heterocephalus_glaber_male
ENSDARG00000028976pus36253.497ENSHGLG00100002435-9653.497Heterocephalus_glaber_male
ENSDARG00000028976pus36759.032ENSHGLG00100008656-9659.032Heterocephalus_glaber_male
ENSDARG00000028976pus39369.838ENSHCOG00000015705pus39669.954Hippocampus_comes
ENSDARG00000028976pus39970.064ENSIPUG00000000105pus39870.488Ictalurus_punctatus
ENSDARG00000028976pus38954.756ENSSTOG00000003721PUS38954.651Ictidomys_tridecemlineatus
ENSDARG00000028976pus38056.888ENSJJAG00000011306Pus38954.630Jaculus_jaculus
ENSDARG00000028976pus39966.598ENSKMAG00000016715pus39967.842Kryptolebias_marmoratus
ENSDARG00000028976pus39369.321ENSLBEG00000004143pus39669.355Labrus_bergylta
ENSDARG00000028976pus39254.222ENSLACG00000011161PUS38854.897Latimeria_chalumnae
ENSDARG00000028976pus39568.640ENSLOCG00000011922pus39968.640Lepisosteus_oculatus
ENSDARG00000028976pus36630.395ENSLAFG00000028731PUS17730.395Loxodonta_africana
ENSDARG00000028976pus39951.134ENSLAFG00000000535PUS38953.881Loxodonta_africana
ENSDARG00000028976pus39354.241ENSMFAG00000041002PUS38954.965Macaca_fascicularis
ENSDARG00000028976pus39354.241ENSMMUG00000041875PUS38954.965Macaca_mulatta
ENSDARG00000028976pus39354.241ENSMNEG00000045347PUS38954.965Macaca_nemestrina
ENSDARG00000028976pus39354.464ENSMLEG00000029053PUS38955.196Mandrillus_leucophaeus
ENSDARG00000028976pus39967.653ENSMAMG00000016741pus39968.499Mastacembelus_armatus
ENSDARG00000028976pus39866.525ENSMZEG00005015950pus39967.591Maylandia_zebra
ENSDARG00000028976pus38257.867ENSMGAG00000000851PUS39657.333Meleagris_gallopavo
ENSDARG00000028976pus39254.831ENSMAUG00000015873Pus39452.008Mesocricetus_auratus
ENSDARG00000028976pus36030.519ENSMAUG00000001482Pus16330.195Mesocricetus_auratus
ENSDARG00000028976pus39849.686ENSMICG00000032941PUS38753.256Microcebus_murinus
ENSDARG00000028976pus39253.571ENSMOCG00000004901Pus39450.840Microtus_ochrogaster
ENSDARG00000028976pus39472.874ENSMMOG00000013909pus39474.023Mola_mola
ENSDARG00000028976pus39052.360ENSMODG00000004222PUS39652.370Monodelphis_domestica
ENSDARG00000028976pus39570.946ENSMALG00000022420pus39672.072Monopterus_albus
ENSDARG00000028976pus36030.195MGP_CAROLIEiJ_G0027551Pus16730.195Mus_caroli
ENSDARG00000028976pus39552.061MGP_CAROLIEiJ_G0031957Pus39759.164Mus_caroli
ENSDARG00000028976pus39950.314ENSMUSG00000032103Pus39759.164Mus_musculus
ENSDARG00000028976pus36030.195ENSMUSG00000029507Pus16730.195Mus_musculus
ENSDARG00000028976pus39052.874MGP_PahariEiJ_G0014822Pus39759.807Mus_pahari
ENSDARG00000028976pus36030.195MGP_PahariEiJ_G0024133Pus16730.195Mus_pahari
ENSDARG00000028976pus36030.195MGP_SPRETEiJ_G0028549Pus16730.195Mus_spretus
ENSDARG00000028976pus39551.844MGP_SPRETEiJ_G0033081Pus39759.486Mus_spretus
ENSDARG00000028976pus36030.065ENSMPUG00000002314PUS16730.065Mustela_putorius_furo
ENSDARG00000028976pus39353.215ENSMPUG00000006568PUS38953.899Mustela_putorius_furo
ENSDARG00000028976pus39850.943ENSMLUG00000030636PUS38754.419Myotis_lucifugus
ENSDARG00000028976pus39950.420ENSNGAG00000013868Pus39450.210Nannospalax_galili
ENSDARG00000028976pus39867.164ENSNBRG00000015864pus39968.230Neolamprologus_brichardi
ENSDARG00000028976pus39354.688ENSNLEG00000007460PUS38955.658Nomascus_leucogenys
ENSDARG00000028976pus37564.865ENSMEUG00000014040PUS37165.714Notamacropus_eugenii
ENSDARG00000028976pus39353.659ENSOPRG00000007888-8954.273Ochotona_princeps
ENSDARG00000028976pus39253.437ENSODEG00000004280PUS38854.128Octodon_degus
ENSDARG00000028976pus39669.351ENSONIG00000016224pus39970.470Oreochromis_niloticus
ENSDARG00000028976pus39355.357ENSOANG00000000406PUS38855.220Ornithorhynchus_anatinus
ENSDARG00000028976pus39052.887ENSOCUG00000004468PUS38452.900Oryctolagus_cuniculus
ENSDARG00000028976pus37030.168ENSOCUG00000007310PUS16730.168Oryctolagus_cuniculus
ENSDARG00000028976pus39865.890ENSORLG00000008445pus39965.466Oryzias_latipes
ENSDARG00000028976pus39767.024ENSORLG00020008847pus39968.094Oryzias_latipes_hni
ENSDARG00000028976pus39766.102ENSORLG00015007438pus39967.161Oryzias_latipes_hsok
ENSDARG00000028976pus39768.709ENSOMEG00000014321pus39869.803Oryzias_melastigma
ENSDARG00000028976pus39052.847ENSOGAG00000008913PUS38952.740Otolemur_garnettii
ENSDARG00000028976pus310050.415ENSOARG00000011870PUS38953.563Ovis_aries
ENSDARG00000028976pus39354.464ENSPPAG00000025809PUS38955.658Pan_paniscus
ENSDARG00000028976pus39850.105ENSPPRG00000005662PUS38753.488Panthera_pardus
ENSDARG00000028976pus39850.524ENSPTIG00000001192PUS38753.953Panthera_tigris_altaica
ENSDARG00000028976pus39354.241ENSPTRG00000004449PUS38955.427Pan_troglodytes
ENSDARG00000028976pus39354.241ENSPANG00000013782PUS38954.965Papio_anubis
ENSDARG00000028976pus39469.575ENSPKIG00000000646pus39669.575Paramormyrops_kingsleyae
ENSDARG00000028976pus39154.139ENSPSIG00000013961PUS38754.988Pelodiscus_sinensis
ENSDARG00000028976pus39368.879ENSPMGG00000000911pus39968.879Periophthalmus_magnuspinnatus
ENSDARG00000028976pus36030.519ENSPEMG00000013448Pus16330.519Peromyscus_maniculatus_bairdii
ENSDARG00000028976pus39254.157ENSPEMG00000009602Pus39451.797Peromyscus_maniculatus_bairdii
ENSDARG00000028976pus39053.547ENSPCIG00000010225PUS39553.563Phascolarctos_cinereus
ENSDARG00000028976pus39571.298ENSPFOG00000009447pus310069.704Poecilia_formosa
ENSDARG00000028976pus39966.807ENSPLAG00000023343pus310066.807Poecilia_latipinna
ENSDARG00000028976pus39967.437ENSPMEG00000009870pus310067.437Poecilia_mexicana
ENSDARG00000028976pus36973.054ENSPREG00000003179pus36473.054Poecilia_reticulata
ENSDARG00000028976pus36030.000ENSPPYG00000005132PUS16330.000Pongo_abelii
ENSDARG00000028976pus39354.911ENSPPYG00000004039PUS38955.658Pongo_abelii
ENSDARG00000028976pus39252.784ENSPCAG00000000441PUS38953.196Procavia_capensis
ENSDARG00000028976pus39552.268ENSPCOG00000019330PUS38753.953Propithecus_coquereli
ENSDARG00000028976pus39352.889ENSPVAG00000002606PUS38953.563Pteropus_vampyrus
ENSDARG00000028976pus39866.951ENSPNYG00000019615pus39968.017Pundamilia_nyererei
ENSDARG00000028976pus39971.429ENSPNAG00000014541pus39971.429Pygocentrus_nattereri
ENSDARG00000028976pus39553.043ENSRNOG00000012994Pus38955.093Rattus_norvegicus
ENSDARG00000028976pus36030.195ENSRNOG00000037500Pus16330.195Rattus_norvegicus
ENSDARG00000028976pus39154.751ENSRBIG00000044456PUS38855.738Rhinopithecus_bieti
ENSDARG00000028976pus39354.464ENSRROG00000035245PUS38955.427Rhinopithecus_roxellana
ENSDARG00000028976pus36841.562YFL001WDEG16741.562Saccharomyces_cerevisiae
ENSDARG00000028976pus39354.709ENSSBOG00000022433PUS38855.452Saimiri_boliviensis_boliviensis
ENSDARG00000028976pus39352.550ENSSHAG00000001382PUS38953.440Sarcophilus_harrisii
ENSDARG00000028976pus39472.286ENSSFOG00015004850pus39672.286Scleropages_formosus
ENSDARG00000028976pus39767.653ENSSMAG00000020340pus39968.499Scophthalmus_maximus
ENSDARG00000028976pus39568.478ENSSDUG00000020825pus39670.000Seriola_dumerili
ENSDARG00000028976pus39569.565ENSSLDG00000019932pus39670.652Seriola_lalandi_dorsalis
ENSDARG00000028976pus36757.235ENSSARG00000013826PUS39757.235Sorex_araneus
ENSDARG00000028976pus39153.986ENSSPUG00000001412PUS38754.695Sphenodon_punctatus
ENSDARG00000028976pus39570.455ENSSPAG00000019221pus39871.591Stegastes_partitus
ENSDARG00000028976pus36030.333ENSSSCG00000009741PUS16630.333Sus_scrofa
ENSDARG00000028976pus39751.923ENSSSCG00000015222PUS38953.563Sus_scrofa
ENSDARG00000028976pus38954.691ENSTGUG00000000778-9754.587Taeniopygia_guttata
ENSDARG00000028976pus39469.111ENSTRUG00000013050pus39969.111Takifugu_rubripes
ENSDARG00000028976pus39667.634ENSTNIG00000004929PUS39069.712Tetraodon_nigroviridis
ENSDARG00000028976pus38466.089ENSTNIG00000010307pus39766.089Tetraodon_nigroviridis
ENSDARG00000028976pus39055.787ENSTBEG00000004382PUS39355.684Tupaia_belangeri
ENSDARG00000028976pus39352.889ENSTTRG00000012167PUS38953.563Tursiops_truncatus
ENSDARG00000028976pus39352.539ENSUAMG00000009297PUS38953.196Ursus_americanus
ENSDARG00000028976pus39352.759ENSUMAG00000001795PUS38953.425Ursus_maritimus
ENSDARG00000028976pus35830.201ENSUMAG00000002831PUS17730.201Ursus_maritimus
ENSDARG00000028976pus39950.415ENSVPAG00000001495PUS38952.874Vicugna_pacos
ENSDARG00000028976pus38953.811ENSVVUG00000020152PUS38853.704Vulpes_vulpes
ENSDARG00000028976pus39650.655ENSXETG00000024532pus38650.435Xenopus_tropicalis
ENSDARG00000028976pus38167.200ENSXMAG00000025077pus38567.200Xiphophorus_maculatus
ENSDARG00000028976pus38266.667ENSXMAG00000025659PUS35870.402Xiphophorus_maculatus
ENSDARG00000028976pus39770.824ENSXMAG00000028016pus39870.824Xiphophorus_maculatus
ENSDARG00000028976pus35578.599ENSXMAG00000025146pus37978.599Xiphophorus_maculatus
ENSDARG00000028976pus35578.599ENSXMAG00000028945pus38578.599Xiphophorus_maculatus
ENSDARG00000028976pus38167.021ENSXMAG00000029934pus38567.021Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001522pseudouridine synthesis-IEAProcess
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0008033tRNA processing-IEAProcess
GO:0009451RNA modification-IEAProcess
GO:0009982pseudouridine synthase activity21873635.IBAFunction
GO:0009982pseudouridine synthase activity-IEAFunction
GO:0016853isomerase activity-IEAFunction
GO:0031119tRNA pseudouridine synthesis21873635.IBAProcess
GO:1990481mRNA pseudouridine synthesis21873635.IBAProcess

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