EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000029248 (Gene tree)
Gene ID: 406418
Gene Symbol: fubp1
Alias: wu:fa92h11|wu:fb24h11|wu:fc26f06|zgc:66046
Full Name: far upstream element (FUSE) binding protein 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 13812 bases
Position: chr2:8649293-8663104
Accession: ZDB-GENE-040426-2159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000075883	KH_1	PF00013.29	6.9e-68	1	4
ENSDARP00000075883	KH_1	PF00013.29	6.9e-68	2	4
ENSDARP00000075883	KH_1	PF00013.29	6.9e-68	3	4
ENSDARP00000075883	KH_1	PF00013.29	6.9e-68	4	4
ENSDARP00000150517	KH_1	PF00013.29	8.6e-68	1	4
ENSDARP00000150517	KH_1	PF00013.29	8.6e-68	2	4
ENSDARP00000150517	KH_1	PF00013.29	8.6e-68	3	4
ENSDARP00000150517	KH_1	PF00013.29	8.6e-68	4	4
ENSDARP00000075883	KH_2	PF07650.17	1.3e-20	1	2
ENSDARP00000075883	KH_2	PF07650.17	1.3e-20	2	2
ENSDARP00000150517	KH_2	PF07650.17	1.5e-20	1	2
ENSDARP00000150517	KH_2	PF07650.17	1.5e-20	2	2
ENSDARP00000150517	DUF1897	PF09005.10	5.5e-13	1	2
ENSDARP00000150517	DUF1897	PF09005.10	5.5e-13	2	2
ENSDARP00000075883	DUF1897	PF09005.10	2.2e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000186024	-	2013	XM_009297514	ENSDARP00000150517	670 (aa)	XP_009295789	A0A2R8RQC2
ENSDART00000081442	-	4892	XM_009297500	ENSDARP00000075883	642 (aa)	XP_009295775	Q6P2A9

Gene Model

Click here to download ENSDARG00000029248's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000029248's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000029248	fubp1	67	57.802	ENSDARG00000026489	khsrp	100	55.310
ENSDARG00000029248	fubp1	95	50.562	ENSDARG00000086896	fubp3	73	55.234
ENSDARG00000029248	fubp1	56	33.557	ENSDARG00000003421	igf2bp2a	76	33.557
ENSDARG00000029248	fubp1	60	40.476	ENSDARG00000099039	pcbp2	73	40.476
ENSDARG00000029248	fubp1	57	33.735	ENSDARG00000024276	pcbp4	61	32.692
ENSDARG00000029248	fubp1	55	39.394	ENSDARG00000020178	nova1	58	30.769
ENSDARG00000029248	fubp1	64	39.394	ENSDARG00000017673	nova2	55	39.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000029248	fubp1	70	77.155	ENSG00000162613	FUBP1	100	69.760	Homo_sapiens
ENSDARG00000029248	fubp1	99	79.231	ENSAPOG00000014845	fubp1	98	77.042	Acanthochromis_polyacanthus
ENSDARG00000029248	fubp1	70	73.156	ENSAMEG00000007372	FUBP1	100	67.294	Ailuropoda_melanoleuca
ENSDARG00000029248	fubp1	100	80.031	ENSACIG00000020024	fubp1	100	76.344	Amphilophus_citrinellus
ENSDARG00000029248	fubp1	100	80.247	ENSAPEG00000012232	fubp1	100	77.778	Amphiprion_percula
ENSDARG00000029248	fubp1	100	83.655	ENSATEG00000018619	fubp1	100	81.453	Anabas_testudineus
ENSDARG00000029248	fubp1	66	78.302	ENSAPLG00000005965	FUBP1	68	78.436	Anas_platyrhynchos
ENSDARG00000029248	fubp1	99	67.283	ENSACAG00000006310	FUBP1	96	67.994	Anolis_carolinensis
ENSDARG00000029248	fubp1	100	83.507	ENSACLG00000006708	fubp1	100	82.021	Astatotilapia_calliptera
ENSDARG00000029248	fubp1	86	84.095	ENSAMXG00000005525	fubp1	99	79.707	Astyanax_mexicanus
ENSDARG00000029248	fubp1	70	76.940	ENSCJAG00000007062	FUBP1	100	70.091	Callithrix_jacchus
ENSDARG00000029248	fubp1	70	76.774	ENSCAFG00000020361	FUBP1	100	69.611	Canis_familiaris
ENSDARG00000029248	fubp1	95	70.418	ENSTSYG00000000148	FUBP1	100	69.427	Carlito_syrichta
ENSDARG00000029248	fubp1	56	80.469	ENSCAPG00000011052	-	64	80.469	Cavia_aperea
ENSDARG00000029248	fubp1	70	76.774	ENSCPOG00000002757	FUBP1	100	71.812	Cavia_porcellus
ENSDARG00000029248	fubp1	91	62.678	ENSCCAG00000036537	FUBP1	100	61.798	Cebus_capucinus
ENSDARG00000029248	fubp1	70	76.989	ENSCATG00000042126	FUBP1	100	69.760	Cercocebus_atys
ENSDARG00000029248	fubp1	70	76.774	ENSCLAG00000005621	FUBP1	100	74.359	Chinchilla_lanigera
ENSDARG00000029248	fubp1	70	76.989	ENSCSAG00000001402	FUBP1	100	69.760	Chlorocebus_sabaeus
ENSDARG00000029248	fubp1	70	76.559	ENSCHOG00000008177	FUBP1	98	69.565	Choloepus_hoffmanni
ENSDARG00000029248	fubp1	70	78.214	ENSCGRG00001007103	Fubp1	100	70.270	Cricetulus_griseus_chok1gshd
ENSDARG00000029248	fubp1	66	78.588	ENSCGRG00000003372	Fubp1	100	71.141	Cricetulus_griseus_crigri
ENSDARG00000029248	fubp1	100	82.946	ENSCSEG00000021412	fubp1	98	81.085	Cynoglossus_semilaevis
ENSDARG00000029248	fubp1	99	82.563	ENSCVAG00000014487	fubp1	99	80.775	Cyprinodon_variegatus
ENSDARG00000029248	fubp1	82	54.878	ENSDNOG00000034565	-	88	46.389	Dasypus_novemcinctus
ENSDARG00000029248	fubp1	70	76.989	ENSDORG00000016534	Fubp1	98	69.865	Dipodomys_ordii
ENSDARG00000029248	fubp1	76	76.657	ENSETEG00000000948	-	58	76.945	Echinops_telfairi
ENSDARG00000029248	fubp1	85	50.735	ENSEBUG00000016143	fubp1	63	70.968	Eptatretus_burgeri
ENSDARG00000029248	fubp1	69	81.699	ENSEEUG00000001287	FUBP1	88	67.335	Erinaceus_europaeus
ENSDARG00000029248	fubp1	100	83.667	ENSELUG00000007990	fubp1	100	80.740	Esox_lucius
ENSDARG00000029248	fubp1	70	76.840	ENSFALG00000005768	FUBP1	68	76.957	Ficedula_albicollis
ENSDARG00000029248	fubp1	70	76.559	ENSFDAG00000014210	FUBP1	100	72.603	Fukomys_damarensis
ENSDARG00000029248	fubp1	100	82.912	ENSFHEG00000005230	fubp1	100	80.989	Fundulus_heteroclitus
ENSDARG00000029248	fubp1	100	77.573	ENSGMOG00000003370	fubp1	66	82.217	Gadus_morhua
ENSDARG00000029248	fubp1	70	77.273	ENSGALG00000008939	FUBP1	76	78.302	Gallus_gallus
ENSDARG00000029248	fubp1	100	81.725	ENSGAFG00000020972	fubp1	100	79.678	Gambusia_affinis
ENSDARG00000029248	fubp1	100	79.878	ENSGACG00000016563	fubp1	100	78.201	Gasterosteus_aculeatus
ENSDARG00000029248	fubp1	100	83.507	ENSHBUG00000009835	fubp1	100	81.724	Haplochromis_burtoni
ENSDARG00000029248	fubp1	70	76.774	ENSHGLG00000008415	-	100	74.359	Heterocephalus_glaber_female
ENSDARG00000029248	fubp1	72	71.125	ENSHGLG00000002808	-	72	70.905	Heterocephalus_glaber_female
ENSDARG00000029248	fubp1	72	71.762	ENSHGLG00100001414	-	72	71.552	Heterocephalus_glaber_male
ENSDARG00000029248	fubp1	70	76.774	ENSHGLG00100003417	-	100	69.151	Heterocephalus_glaber_male
ENSDARG00000029248	fubp1	100	82.482	ENSHCOG00000000910	fubp1	100	81.022	Hippocampus_comes
ENSDARG00000029248	fubp1	100	82.946	ENSIPUG00000009896	fubp1	100	82.169	Ictalurus_punctatus
ENSDARG00000029248	fubp1	70	77.124	ENSSTOG00000014312	FUBP1	100	69.611	Ictidomys_tridecemlineatus
ENSDARG00000029248	fubp1	99	69.863	ENSJJAG00000020069	Fubp1	100	72.603	Jaculus_jaculus
ENSDARG00000029248	fubp1	100	82.963	ENSKMAG00000018897	fubp1	100	80.000	Kryptolebias_marmoratus
ENSDARG00000029248	fubp1	99	80.438	ENSLBEG00000012700	fubp1	97	79.854	Labrus_bergylta
ENSDARG00000029248	fubp1	98	78.184	ENSLOCG00000003745	fubp1	100	77.969	Lepisosteus_oculatus
ENSDARG00000029248	fubp1	70	73.760	ENSLAFG00000003273	FUBP1	100	70.506	Loxodonta_africana
ENSDARG00000029248	fubp1	70	77.155	ENSMFAG00000031825	FUBP1	100	70.242	Macaca_fascicularis
ENSDARG00000029248	fubp1	70	77.342	ENSMMUG00000002899	FUBP1	100	69.760	Macaca_mulatta
ENSDARG00000029248	fubp1	70	76.989	ENSMNEG00000045212	FUBP1	100	69.760	Macaca_nemestrina
ENSDARG00000029248	fubp1	99	81.378	ENSMAMG00000007489	fubp1	99	80.499	Mastacembelus_armatus
ENSDARG00000029248	fubp1	100	83.358	ENSMZEG00005024298	fubp1	100	82.171	Maylandia_zebra
ENSDARG00000029248	fubp1	66	77.830	ENSMGAG00000009424	FUBP1	68	77.962	Meleagris_gallopavo
ENSDARG00000029248	fubp1	70	76.989	ENSMAUG00000016428	Fubp1	100	71.812	Mesocricetus_auratus
ENSDARG00000029248	fubp1	70	77.657	ENSMOCG00000014751	Fubp1	100	71.141	Microtus_ochrogaster
ENSDARG00000029248	fubp1	87	82.238	ENSMMOG00000019463	fubp1	99	79.751	Mola_mola
ENSDARG00000029248	fubp1	68	70.897	ENSMODG00000020804	FUBP1	100	65.391	Monodelphis_domestica
ENSDARG00000029248	fubp1	100	82.353	ENSMALG00000015173	fubp1	100	81.424	Monopterus_albus
ENSDARG00000029248	fubp1	98	70.399	MGP_CAROLIEiJ_G0025740	Fubp1	99	75.518	Mus_caroli
ENSDARG00000029248	fubp1	98	70.399	ENSMUSG00000028034	Fubp1	99	75.330	Mus_musculus
ENSDARG00000029248	fubp1	70	77.874	MGP_PahariEiJ_G0027191	Fubp1	99	75.376	Mus_pahari
ENSDARG00000029248	fubp1	98	70.552	MGP_SPRETEiJ_G0026693	Fubp1	99	75.518	Mus_spretus
ENSDARG00000029248	fubp1	70	73.006	ENSMLUG00000014802	FUBP1	71	72.764	Myotis_lucifugus
ENSDARG00000029248	fubp1	70	73.478	ENSNGAG00000014302	Fubp1	100	71.141	Nannospalax_galili
ENSDARG00000029248	fubp1	100	80.901	ENSNBRG00000015099	fubp1	100	77.484	Neolamprologus_brichardi
ENSDARG00000029248	fubp1	70	74.732	ENSNLEG00000009772	FUBP1	100	67.970	Nomascus_leucogenys
ENSDARG00000029248	fubp1	89	69.341	ENSOPRG00000001175	FUBP1	61	86.792	Ochotona_princeps
ENSDARG00000029248	fubp1	98	52.025	ENSODEG00000003657	-	71	54.204	Octodon_degus
ENSDARG00000029248	fubp1	70	76.774	ENSODEG00000002600	-	100	72.603	Octodon_degus
ENSDARG00000029248	fubp1	99	83.458	ENSONIG00000018381	fubp1	99	85.070	Oreochromis_niloticus
ENSDARG00000029248	fubp1	61	78.426	ENSOANG00000009777	FUBP1	99	69.157	Ornithorhynchus_anatinus
ENSDARG00000029248	fubp1	99	79.751	ENSORLG00000003540	fubp1	99	77.414	Oryzias_latipes
ENSDARG00000029248	fubp1	100	82.101	ENSORLG00020005908	fubp1	99	77.259	Oryzias_latipes_hni
ENSDARG00000029248	fubp1	100	82.127	ENSORLG00015008779	fubp1	100	80.828	Oryzias_latipes_hsok
ENSDARG00000029248	fubp1	100	82.667	ENSOMEG00000021943	fubp1	100	77.709	Oryzias_melastigma
ENSDARG00000029248	fubp1	70	72.857	ENSOGAG00000014233	FUBP1	100	67.194	Otolemur_garnettii
ENSDARG00000029248	fubp1	70	76.940	ENSOARG00000013259	FUBP1	100	70.803	Ovis_aries
ENSDARG00000029248	fubp1	70	76.774	ENSPPRG00000000413	FUBP1	100	69.611	Panthera_pardus
ENSDARG00000029248	fubp1	70	76.774	ENSPTIG00000019450	FUBP1	100	69.611	Panthera_tigris_altaica
ENSDARG00000029248	fubp1	67	77.726	ENSPSIG00000012965	FUBP1	69	77.855	Pelodiscus_sinensis
ENSDARG00000029248	fubp1	98	79.030	ENSPMGG00000009060	fubp1	71	83.850	Periophthalmus_magnuspinnatus
ENSDARG00000029248	fubp1	70	78.043	ENSPEMG00000021802	Fubp1	100	72.603	Peromyscus_maniculatus_bairdii
ENSDARG00000029248	fubp1	63	59.565	ENSPMAG00000001644	-	93	59.565	Petromyzon_marinus
ENSDARG00000029248	fubp1	100	82.764	ENSPFOG00000000238	fubp1	100	81.129	Poecilia_formosa
ENSDARG00000029248	fubp1	100	81.832	ENSPLAG00000021170	fubp1	100	78.571	Poecilia_latipinna
ENSDARG00000029248	fubp1	99	78.825	ENSPMEG00000004747	fubp1	99	81.981	Poecilia_mexicana
ENSDARG00000029248	fubp1	100	82.615	ENSPREG00000017911	fubp1	100	80.981	Poecilia_reticulata
ENSDARG00000029248	fubp1	77	76.632	ENSPPYG00000001219	-	68	77.489	Pongo_abelii
ENSDARG00000029248	fubp1	70	76.724	ENSPCAG00000012617	FUBP1	98	69.369	Procavia_capensis
ENSDARG00000029248	fubp1	70	76.890	ENSPCOG00000024974	FUBP1	100	69.611	Propithecus_coquereli
ENSDARG00000029248	fubp1	70	70.968	ENSPVAG00000014637	FUBP1	98	65.517	Pteropus_vampyrus
ENSDARG00000029248	fubp1	100	83.358	ENSPNYG00000004552	fubp1	100	82.171	Pundamilia_nyererei
ENSDARG00000029248	fubp1	100	84.673	ENSPNAG00000016207	fubp1	100	82.589	Pygocentrus_nattereri
ENSDARG00000029248	fubp1	70	78.043	ENSRNOG00000043370	Fubp1	100	70.348	Rattus_norvegicus
ENSDARG00000029248	fubp1	70	76.989	ENSRBIG00000042950	FUBP1	100	69.760	Rhinopithecus_bieti
ENSDARG00000029248	fubp1	70	76.989	ENSRROG00000043534	FUBP1	100	69.760	Rhinopithecus_roxellana
ENSDARG00000029248	fubp1	70	76.774	ENSSBOG00000027299	FUBP1	100	69.611	Saimiri_boliviensis_boliviensis
ENSDARG00000029248	fubp1	66	76.457	ENSSHAG00000005367	FUBP1	99	70.973	Sarcophilus_harrisii
ENSDARG00000029248	fubp1	100	81.899	ENSSFOG00015010213	fubp1	100	81.306	Scleropages_formosus
ENSDARG00000029248	fubp1	100	82.232	ENSSMAG00000012029	fubp1	98	82.232	Scophthalmus_maximus
ENSDARG00000029248	fubp1	100	82.456	ENSSDUG00000007383	fubp1	98	82.749	Seriola_dumerili
ENSDARG00000029248	fubp1	100	82.456	ENSSLDG00000022863	fubp1	98	82.749	Seriola_lalandi_dorsalis
ENSDARG00000029248	fubp1	83	81.308	ENSSARG00000011730	FUBP1	55	87.209	Sorex_araneus
ENSDARG00000029248	fubp1	99	68.546	ENSSPUG00000008389	FUBP1	100	66.241	Sphenodon_punctatus
ENSDARG00000029248	fubp1	100	83.507	ENSSPAG00000010161	fubp1	100	81.872	Stegastes_partitus
ENSDARG00000029248	fubp1	66	76.977	ENSTGUG00000006841	FUBP1	69	77.103	Taeniopygia_guttata
ENSDARG00000029248	fubp1	100	80.692	ENSTRUG00000004615	fubp1	100	78.242	Takifugu_rubripes
ENSDARG00000029248	fubp1	52	91.156	ENSTNIG00000019815	-	87	91.156	Tetraodon_nigroviridis
ENSDARG00000029248	fubp1	78	83.908	ENSTBEG00000017333	FUBP1	60	81.609	Tupaia_belangeri
ENSDARG00000029248	fubp1	70	76.774	ENSTTRG00000000096	FUBP1	98	69.565	Tursiops_truncatus
ENSDARG00000029248	fubp1	70	76.774	ENSVPAG00000004709	FUBP1	99	69.565	Vicugna_pacos
ENSDARG00000029248	fubp1	100	75.926	ENSXCOG00000019354	fubp1	72	82.262	Xiphophorus_couchianus
ENSDARG00000029248	fubp1	97	79.905	ENSXMAG00000007168	fubp1	99	81.818	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0010468	regulation of gene expression	26839368.	IGI	Process