EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000029252 (Gene tree)
Gene ID: 321504
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: Sjogren syndrome antigen B (autoantigen La)
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 12029 bases
Position: chr6:3716666-3728694
Accession: ZDB-GENE-030131-223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000041626	RRM_1	PF00076.22	4.5e-07	1	1
ENSDARP00000151284	RRM_1	PF00076.22	4.5e-07	1	1
ENSDARP00000041626	RRM_3	PF08777.11	1.3e-24	1	1
ENSDARP00000151284	RRM_3	PF08777.11	1.3e-24	1	1
ENSDARP00000041626	La	PF05383.17	1.6e-20	1	1
ENSDARP00000151284	La	PF05383.17	1.6e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000184330	-	1261	XM_005172073	ENSDARP00000151284	401 (aa)	XP_005172130	Q7ZTI0
ENSDART00000041627	-	2594	XM_009302102	ENSDARP00000041626	401 (aa)	XP_009300377	Q7ZTI0

Gene Model

Click here to download ENSDARG00000029252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000029252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000029252	ssb	99	56.576	ENSG00000138385	SSB	98	60.169	Homo_sapiens
ENSDARG00000029252	ssb	100	63.614	ENSAPOG00000003448	ssb	100	65.099	Acanthochromis_polyacanthus
ENSDARG00000029252	ssb	99	54.916	ENSAMEG00000010507	SSB	98	54.916	Ailuropoda_melanoleuca
ENSDARG00000029252	ssb	92	63.172	ENSACIG00000001738	ssb	97	63.978	Amphilophus_citrinellus
ENSDARG00000029252	ssb	100	64.604	ENSAOCG00000020398	ssb	100	64.604	Amphiprion_ocellaris
ENSDARG00000029252	ssb	100	64.851	ENSAPEG00000020395	ssb	100	64.851	Amphiprion_percula
ENSDARG00000029252	ssb	100	65.679	ENSATEG00000016884	ssb	100	65.679	Anabas_testudineus
ENSDARG00000029252	ssb	99	54.118	ENSAPLG00000006109	SSB	98	54.762	Anas_platyrhynchos
ENSDARG00000029252	ssb	99	55.037	ENSACAG00000017008	SSB	98	53.808	Anolis_carolinensis
ENSDARG00000029252	ssb	99	50.620	ENSANAG00000027195	-	98	50.372	Aotus_nancymaae
ENSDARG00000029252	ssb	100	57.921	ENSACLG00000010798	ssb	100	58.663	Astatotilapia_calliptera
ENSDARG00000029252	ssb	100	75.061	ENSAMXG00000012606	ssb	100	74.817	Astyanax_mexicanus
ENSDARG00000029252	ssb	99	57.463	ENSBTAG00000008716	SSB	98	57.463	Bos_taurus
ENSDARG00000029252	ssb	75	35.526	WBGene00016653	C44E4.4	76	36.513	Caenorhabditis_elegans
ENSDARG00000029252	ssb	99	56.576	ENSCJAG00000045073	SSB	98	56.576	Callithrix_jacchus
ENSDARG00000029252	ssb	99	56.436	ENSCAFG00000012418	SSB	98	56.436	Canis_familiaris
ENSDARG00000029252	ssb	99	56.436	ENSCAFG00020002900	SSB	98	56.436	Canis_lupus_dingo
ENSDARG00000029252	ssb	99	54.975	ENSCHIG00000022196	-	98	53.616	Capra_hircus
ENSDARG00000029252	ssb	99	58.209	ENSCHIG00000022624	-	98	58.209	Capra_hircus
ENSDARG00000029252	ssb	99	57.107	ENSTSYG00000000097	SSB	98	57.107	Carlito_syrichta
ENSDARG00000029252	ssb	99	57.960	ENSCPOG00000003338	SSB	98	57.568	Cavia_porcellus
ENSDARG00000029252	ssb	99	56.576	ENSCCAG00000035147	SSB	98	56.576	Cebus_capucinus
ENSDARG00000029252	ssb	99	44.169	ENSCATG00000036701	SSB	83	54.110	Cercocebus_atys
ENSDARG00000029252	ssb	99	44.169	ENSCATG00000042909	-	98	43.921	Cercocebus_atys
ENSDARG00000029252	ssb	99	57.711	ENSCLAG00000015617	-	98	57.711	Chinchilla_lanigera
ENSDARG00000029252	ssb	99	52.764	ENSCSAG00000018390	-	99	52.273	Chlorocebus_sabaeus
ENSDARG00000029252	ssb	99	56.965	ENSCSAG00000015200	SSB	87	56.824	Chlorocebus_sabaeus
ENSDARG00000029252	ssb	99	56.716	ENSCHOG00000007763	SSB	98	56.716	Choloepus_hoffmanni
ENSDARG00000029252	ssb	100	60.976	ENSCPBG00000006519	SSB	99	61.463	Chrysemys_picta_bellii
ENSDARG00000029252	ssb	99	57.072	ENSCANG00000027695	SSB	98	57.072	Colobus_angolensis_palliatus
ENSDARG00000029252	ssb	99	51.852	ENSCANG00000033240	-	98	51.365	Colobus_angolensis_palliatus
ENSDARG00000029252	ssb	93	46.113	ENSCANG00000028838	-	88	45.187	Colobus_angolensis_palliatus
ENSDARG00000029252	ssb	99	48.687	ENSCGRG00001024831	Ssb	98	50.000	Cricetulus_griseus_chok1gshd
ENSDARG00000029252	ssb	99	48.687	ENSCGRG00000005387	Ssb	98	50.000	Cricetulus_griseus_crigri
ENSDARG00000029252	ssb	100	63.547	ENSCSEG00000011599	ssb	100	63.614	Cynoglossus_semilaevis
ENSDARG00000029252	ssb	100	62.836	ENSCVAG00000021558	ssb	100	63.793	Cyprinodon_variegatus
ENSDARG00000029252	ssb	99	57.463	ENSDNOG00000013450	SSB	98	57.463	Dasypus_novemcinctus
ENSDARG00000029252	ssb	99	51.345	ENSDORG00000005543	Ssb	98	50.860	Dipodomys_ordii
ENSDARG00000029252	ssb	88	33.787	FBgn0011638	La	66	36.194	Drosophila_melanogaster
ENSDARG00000029252	ssb	93	46.457	ENSEBUG00000001237	ssb	92	47.500	Eptatretus_burgeri
ENSDARG00000029252	ssb	99	57.816	ENSEASG00005022835	SSB	98	57.816	Equus_asinus_asinus
ENSDARG00000029252	ssb	99	57.816	ENSECAG00000018495	SSB	98	57.816	Equus_caballus
ENSDARG00000029252	ssb	75	47.020	ENSEEUG00000008077	SSB	77	46.865	Erinaceus_europaeus
ENSDARG00000029252	ssb	100	68.159	ENSELUG00000020929	ssb	100	68.159	Esox_lucius
ENSDARG00000029252	ssb	99	56.858	ENSFCAG00000011601	SSB	98	56.858	Felis_catus
ENSDARG00000029252	ssb	99	58.722	ENSFALG00000000930	SSB	99	58.722	Ficedula_albicollis
ENSDARG00000029252	ssb	99	57.568	ENSFDAG00000000598	SSB	98	57.568	Fukomys_damarensis
ENSDARG00000029252	ssb	73	56.856	ENSFHEG00000003268	ssb	94	56.678	Fundulus_heteroclitus
ENSDARG00000029252	ssb	99	60.247	ENSGMOG00000002664	ssb	100	57.921	Gadus_morhua
ENSDARG00000029252	ssb	99	59.012	ENSGALG00000009677	SSB	98	58.416	Gallus_gallus
ENSDARG00000029252	ssb	100	62.222	ENSGAFG00000002749	ssb	100	63.971	Gambusia_affinis
ENSDARG00000029252	ssb	100	60.145	ENSGACG00000005107	ssb	100	58.394	Gasterosteus_aculeatus
ENSDARG00000029252	ssb	100	61.220	ENSGAGG00000007807	SSB	99	61.707	Gopherus_agassizii
ENSDARG00000029252	ssb	56	53.304	ENSGGOG00000023471	-	92	53.304	Gorilla_gorilla
ENSDARG00000029252	ssb	99	49.628	ENSGGOG00000024891	-	98	48.507	Gorilla_gorilla
ENSDARG00000029252	ssb	100	59.305	ENSHBUG00000006584	ssb	100	60.050	Haplochromis_burtoni
ENSDARG00000029252	ssb	99	56.934	ENSHGLG00000017580	-	98	56.341	Heterocephalus_glaber_female
ENSDARG00000029252	ssb	99	51.372	ENSHGLG00000005832	-	98	51.372	Heterocephalus_glaber_female
ENSDARG00000029252	ssb	99	53.846	ENSHGLG00000004478	-	98	53.960	Heterocephalus_glaber_female
ENSDARG00000029252	ssb	99	52.854	ENSHGLG00100008767	-	98	52.369	Heterocephalus_glaber_male
ENSDARG00000029252	ssb	99	56.934	ENSHGLG00100003084	-	98	56.341	Heterocephalus_glaber_male
ENSDARG00000029252	ssb	99	59.148	ENSHCOG00000019011	ssb	99	59.398	Hippocampus_comes
ENSDARG00000029252	ssb	100	77.396	ENSIPUG00000003681	SSB	100	77.396	Ictalurus_punctatus
ENSDARG00000029252	ssb	99	57.711	ENSSTOG00000008416	SSB	98	57.463	Ictidomys_tridecemlineatus
ENSDARG00000029252	ssb	90	46.944	ENSJJAG00000016250	-	94	46.667	Jaculus_jaculus
ENSDARG00000029252	ssb	99	50.952	ENSJJAG00000023158	-	98	50.358	Jaculus_jaculus
ENSDARG00000029252	ssb	100	63.457	ENSKMAG00000017317	ssb	100	63.457	Kryptolebias_marmoratus
ENSDARG00000029252	ssb	100	64.356	ENSLBEG00000017345	ssb	100	65.594	Labrus_bergylta
ENSDARG00000029252	ssb	99	56.608	ENSLACG00000014056	SSB	97	57.855	Latimeria_chalumnae
ENSDARG00000029252	ssb	100	66.010	ENSLOCG00000007933	ssb	99	65.764	Lepisosteus_oculatus
ENSDARG00000029252	ssb	99	48.883	ENSLAFG00000028909	-	98	48.259	Loxodonta_africana
ENSDARG00000029252	ssb	99	53.606	ENSLAFG00000000867	-	98	53.461	Loxodonta_africana
ENSDARG00000029252	ssb	74	41.275	ENSLAFG00000026721	-	98	41.000	Loxodonta_africana
ENSDARG00000029252	ssb	88	51.261	ENSMFAG00000041478	-	90	51.692	Macaca_fascicularis
ENSDARG00000029252	ssb	99	57.072	ENSMFAG00000039066	SSB	98	57.072	Macaca_fascicularis
ENSDARG00000029252	ssb	99	57.072	ENSMMUG00000023051	SSB	98	57.072	Macaca_mulatta
ENSDARG00000029252	ssb	99	51.117	ENSMMUG00000011724	-	96	49.377	Macaca_mulatta
ENSDARG00000029252	ssb	99	42.432	ENSMMUG00000039889	-	98	42.184	Macaca_mulatta
ENSDARG00000029252	ssb	88	51.261	ENSMNEG00000034698	-	90	51.692	Macaca_nemestrina
ENSDARG00000029252	ssb	99	48.020	ENSMNEG00000028321	SSB	82	64.865	Macaca_nemestrina
ENSDARG00000029252	ssb	99	57.072	ENSMLEG00000035717	SSB	98	57.072	Mandrillus_leucophaeus
ENSDARG00000029252	ssb	99	41.646	ENSMLEG00000042644	-	98	40.399	Mandrillus_leucophaeus
ENSDARG00000029252	ssb	100	65.432	ENSMAMG00000004800	ssb	100	65.432	Mastacembelus_armatus
ENSDARG00000029252	ssb	100	57.921	ENSMZEG00005005749	ssb	100	58.663	Maylandia_zebra
ENSDARG00000029252	ssb	99	59.259	ENSMGAG00000010328	SSB	98	63.054	Meleagris_gallopavo
ENSDARG00000029252	ssb	99	57.214	ENSMICG00000028252	-	98	56.824	Microcebus_murinus
ENSDARG00000029252	ssb	99	52.778	ENSMICG00000033304	-	97	52.030	Microcebus_murinus
ENSDARG00000029252	ssb	99	53.382	ENSMODG00000008227	-	98	54.258	Monodelphis_domestica
ENSDARG00000029252	ssb	99	36.543	ENSMODG00000007027	-	98	44.279	Monodelphis_domestica
ENSDARG00000029252	ssb	99	46.650	ENSMODG00000019271	-	98	47.132	Monodelphis_domestica
ENSDARG00000029252	ssb	90	57.825	ENSMALG00000008045	ssb	90	61.600	Monopterus_albus
ENSDARG00000029252	ssb	99	50.119	MGP_CAROLIEiJ_G0023629	-	96	60.526	Mus_caroli
ENSDARG00000029252	ssb	99	49.881	ENSMUSG00000068882	Ssb	96	60.526	Mus_musculus
ENSDARG00000029252	ssb	99	50.000	MGP_PahariEiJ_G0025081	-	96	59.868	Mus_pahari
ENSDARG00000029252	ssb	99	49.881	MGP_SPRETEiJ_G0024551	Ssb	96	60.526	Mus_spretus
ENSDARG00000029252	ssb	99	57.072	ENSMPUG00000000785	SSB	98	57.072	Mustela_putorius_furo
ENSDARG00000029252	ssb	100	55.131	ENSMLUG00000016316	SSB	99	54.654	Myotis_lucifugus
ENSDARG00000029252	ssb	100	58.561	ENSNBRG00000012661	ssb	100	60.298	Neolamprologus_brichardi
ENSDARG00000029252	ssb	99	56.824	ENSNLEG00000004958	SSB	98	56.824	Nomascus_leucogenys
ENSDARG00000029252	ssb	84	46.608	ENSNLEG00000028754	-	77	46.626	Nomascus_leucogenys
ENSDARG00000029252	ssb	62	61.847	ENSMEUG00000001650	-	100	61.847	Notamacropus_eugenii
ENSDARG00000029252	ssb	94	54.881	ENSODEG00000004202	-	99	54.881	Octodon_degus
ENSDARG00000029252	ssb	100	59.057	ENSONIG00000008776	ssb	100	59.553	Oreochromis_niloticus
ENSDARG00000029252	ssb	99	57.178	ENSOANG00000008543	SSB	98	57.178	Ornithorhynchus_anatinus
ENSDARG00000029252	ssb	99	56.079	ENSOCUG00000010396	SSB	98	56.079	Oryctolagus_cuniculus
ENSDARG00000029252	ssb	100	62.469	ENSORLG00000017208	ssb	100	61.975	Oryzias_latipes
ENSDARG00000029252	ssb	100	62.562	ENSORLG00020022574	ssb	100	62.562	Oryzias_latipes_hni
ENSDARG00000029252	ssb	100	62.222	ENSORLG00015016592	ssb	100	62.222	Oryzias_latipes_hsok
ENSDARG00000029252	ssb	100	62.162	ENSOMEG00000003193	ssb	100	62.129	Oryzias_melastigma
ENSDARG00000029252	ssb	99	53.333	ENSOGAG00000029768	SSB	98	52.857	Otolemur_garnettii
ENSDARG00000029252	ssb	99	58.458	ENSOARG00000002906	SSB	98	58.458	Ovis_aries
ENSDARG00000029252	ssb	99	49.380	ENSPPAG00000032427	-	96	58.871	Pan_paniscus
ENSDARG00000029252	ssb	99	56.576	ENSPPAG00000042673	SSB	98	56.576	Pan_paniscus
ENSDARG00000029252	ssb	92	45.040	ENSPPAG00000006189	-	95	43.432	Pan_paniscus
ENSDARG00000029252	ssb	99	56.858	ENSPPRG00000006599	SSB	98	56.858	Panthera_pardus
ENSDARG00000029252	ssb	99	56.858	ENSPTIG00000011021	SSB	96	56.858	Panthera_tigris_altaica
ENSDARG00000029252	ssb	99	46.898	ENSPTRG00000042880	-	98	45.274	Pan_troglodytes
ENSDARG00000029252	ssb	99	56.576	ENSPTRG00000012620	SSB	98	56.576	Pan_troglodytes
ENSDARG00000029252	ssb	99	40.554	ENSPANG00000031877	-	94	38.791	Papio_anubis
ENSDARG00000029252	ssb	99	57.072	ENSPANG00000007440	SSB	98	57.072	Papio_anubis
ENSDARG00000029252	ssb	99	42.184	ENSPANG00000034126	-	98	41.687	Papio_anubis
ENSDARG00000029252	ssb	100	68.734	ENSPKIG00000019325	ssb	99	68.734	Paramormyrops_kingsleyae
ENSDARG00000029252	ssb	100	60.488	ENSPSIG00000002265	SSB	93	60.976	Pelodiscus_sinensis
ENSDARG00000029252	ssb	80	57.846	ENSPMGG00000020075	ssb	86	58.154	Periophthalmus_magnuspinnatus
ENSDARG00000029252	ssb	97	45.902	ENSPMAG00000002982	ssb	97	44.548	Petromyzon_marinus
ENSDARG00000029252	ssb	96	56.784	ENSPCIG00000028591	-	98	57.468	Phascolarctos_cinereus
ENSDARG00000029252	ssb	100	63.951	ENSPFOG00000009650	ssb	100	65.185	Poecilia_formosa
ENSDARG00000029252	ssb	100	63.704	ENSPLAG00000020498	ssb	100	64.938	Poecilia_latipinna
ENSDARG00000029252	ssb	100	65.185	ENSPMEG00000001051	ssb	100	65.185	Poecilia_mexicana
ENSDARG00000029252	ssb	93	65.067	ENSPREG00000003708	ssb	99	65.789	Poecilia_reticulata
ENSDARG00000029252	ssb	99	56.824	ENSPPYG00000012919	SSB	98	56.824	Pongo_abelii
ENSDARG00000029252	ssb	95	54.805	ENSPCAG00000010276	SSB	99	54.805	Procavia_capensis
ENSDARG00000029252	ssb	99	50.124	ENSPCOG00000023189	-	98	50.124	Propithecus_coquereli
ENSDARG00000029252	ssb	99	54.342	ENSPCOG00000015741	-	98	54.342	Propithecus_coquereli
ENSDARG00000029252	ssb	89	58.708	ENSPVAG00000006615	SSB	100	58.708	Pteropus_vampyrus
ENSDARG00000029252	ssb	100	58.168	ENSPNYG00000006444	ssb	100	58.911	Pundamilia_nyererei
ENSDARG00000029252	ssb	100	77.340	ENSPNAG00000011708	ssb	100	77.833	Pygocentrus_nattereri
ENSDARG00000029252	ssb	99	49.881	ENSRNOG00000007998	Ssb	98	47.971	Rattus_norvegicus
ENSDARG00000029252	ssb	99	49.877	ENSRNOG00000011606	AABR07061825.1	98	48.522	Rattus_norvegicus
ENSDARG00000029252	ssb	99	47.912	ENSRBIG00000041972	SSB	85	64.865	Rhinopithecus_bieti
ENSDARG00000029252	ssb	94	50.653	ENSRBIG00000041232	-	98	50.131	Rhinopithecus_bieti
ENSDARG00000029252	ssb	99	42.574	ENSRBIG00000029918	-	98	42.079	Rhinopithecus_bieti
ENSDARG00000029252	ssb	90	50.275	ENSRBIG00000041608	-	97	48.901	Rhinopithecus_bieti
ENSDARG00000029252	ssb	99	51.250	ENSRROG00000031684	-	99	50.754	Rhinopithecus_roxellana
ENSDARG00000029252	ssb	99	47.030	ENSRROG00000007149	-	98	46.287	Rhinopithecus_roxellana
ENSDARG00000029252	ssb	99	57.072	ENSRROG00000040346	SSB	98	57.072	Rhinopithecus_roxellana
ENSDARG00000029252	ssb	90	53.022	ENSRROG00000034102	-	88	53.022	Rhinopithecus_roxellana
ENSDARG00000029252	ssb	99	56.824	ENSSBOG00000027204	SSB	98	56.824	Saimiri_boliviensis_boliviensis
ENSDARG00000029252	ssb	99	55.802	ENSSHAG00000018062	SSB	98	57.320	Sarcophilus_harrisii
ENSDARG00000029252	ssb	100	66.422	ENSSFOG00015000550	ssb	99	66.420	Scleropages_formosus
ENSDARG00000029252	ssb	100	59.102	ENSSMAG00000013885	ssb	99	64.420	Scophthalmus_maximus
ENSDARG00000029252	ssb	100	63.951	ENSSDUG00000020117	ssb	100	65.185	Seriola_dumerili
ENSDARG00000029252	ssb	100	61.443	ENSSLDG00000002525	ssb	100	61.443	Seriola_lalandi_dorsalis
ENSDARG00000029252	ssb	95	52.468	ENSSARG00000007747	SSB	99	51.688	Sorex_araneus
ENSDARG00000029252	ssb	100	58.881	ENSSPUG00000012112	SSB	99	59.314	Sphenodon_punctatus
ENSDARG00000029252	ssb	100	63.614	ENSSPAG00000005696	ssb	100	63.614	Stegastes_partitus
ENSDARG00000029252	ssb	91	54.918	ENSSSCG00000015938	SSB	91	54.768	Sus_scrofa
ENSDARG00000029252	ssb	99	57.457	ENSTGUG00000007942	SSB	99	58.191	Taeniopygia_guttata
ENSDARG00000029252	ssb	100	61.538	ENSTRUG00000017839	ssb	100	61.538	Takifugu_rubripes
ENSDARG00000029252	ssb	91	62.398	ENSTNIG00000000915	ssb	100	61.475	Tetraodon_nigroviridis
ENSDARG00000029252	ssb	81	65.455	ENSTBEG00000009056	SSB	80	64.865	Tupaia_belangeri
ENSDARG00000029252	ssb	99	57.178	ENSTTRG00000002152	SSB	98	57.178	Tursiops_truncatus
ENSDARG00000029252	ssb	94	58.511	ENSUAMG00000027833	SSB	98	58.511	Ursus_americanus
ENSDARG00000029252	ssb	99	56.824	ENSUMAG00000013907	SSB	98	56.824	Ursus_maritimus
ENSDARG00000029252	ssb	99	57.606	ENSVPAG00000007183	SSB	98	57.606	Vicugna_pacos
ENSDARG00000029252	ssb	99	56.436	ENSVVUG00000016573	SSB	76	56.436	Vulpes_vulpes
ENSDARG00000029252	ssb	98	52.885	ENSXETG00000025402	ssb	99	52.123	Xenopus_tropicalis
ENSDARG00000029252	ssb	93	62.567	ENSXCOG00000019109	ssb	93	71.429	Xiphophorus_couchianus
ENSDARG00000029252	ssb	100	62.500	ENSXMAG00000004888	ssb	100	63.725	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:1990904	ribonucleoprotein complex	-	IEA	Component