EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000029533 (Gene tree)
Gene ID: 445038
Gene Symbol: rpl18
Alias: fa98d03|wu:fa98d03|zgc:92872
Full Name: ribosomal protein L18
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 22723
Position: chr16: 16969086-16991808
Accession: ZDB-GENE-040801-165
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000043173	-	642	-	ENSDARP00000043172	182 (aa)	-	Q6DGL0
ENSDART00000143128	-	561	-	ENSDARP00000117845	166 (aa)	-	F1QN76
ENSDART00000191876	-	549	-	ENSDARP00000155219	182 (aa)	-	Q6DGL0
ENSDART00000132150	-	714	-	ENSDARP00000116844	164 (aa)	-	E9QF69

Gene Model

Click here to download ENSDARG00000029533's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000029533's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000029533	rpl18	100	55.488	WBGene00004430	rpl-18	96	59.669	Caenorhabditis_elegans
ENSDARG00000029533	rpl18	99	67.403	FBgn0035753	RpL18	96	67.403	Drosophila_melanogaster
ENSDARG00000029533	rpl18	100	84.756	ENSG00000063177	RPL18	99	87.597	Homo_sapiens
ENSDARG00000029533	rpl18	100	84.756	ENSMUSG00000059070	Rpl18	95	87.597	Mus_musculus
ENSDARG00000029533	rpl18	99	54.396	YOL120C	RPL18A	96	54.396	Saccharomyces_cerevisiae
ENSDARG00000029533	rpl18	99	54.396	YNL301C	RPL18B	96	54.396	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component