EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000029818 (Gene tree)
Gene ID: 335396
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5a
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 8323 bases
Position: chr13:36526806-36535128
Accession: ZDB-GENE-030131-7336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000043311	RRM_5	PF13893.6	2.2e-06	1	1
ENSDARP00000144432	RRM_5	PF13893.6	2.2e-06	1	1
ENSDARP00000043311	RRM_1	PF00076.22	3e-33	1	2
ENSDARP00000043311	RRM_1	PF00076.22	3e-33	2	2
ENSDARP00000144432	RRM_1	PF00076.22	3e-33	1	2
ENSDARP00000144432	RRM_1	PF00076.22	3e-33	2	2
ENSDARP00000147014	RRM_1	PF00076.22	1.9e-28	1	2
ENSDARP00000147014	RRM_1	PF00076.22	1.9e-28	2	2
ENSDARP00000147482	RRM_1	PF00076.22	7.1e-17	1	1
ENSDARP00000043311	RRM_3	PF08777.11	6.7e-08	1	1
ENSDARP00000144432	RRM_3	PF08777.11	6.7e-08	1	1
ENSDARP00000147014	RRM_3	PF08777.11	9.7e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000187243	-	427	XM_005156982	ENSDARP00000147482	133 (aa)	XP_005157039	F8W2Y8
ENSDART00000043312	-	1310	-	ENSDARP00000043311	259 (aa)	-	Q6TGT9
ENSDART00000149607	-	715	-	-	- (aa)	-	-
ENSDART00000181046	-	4722	-	ENSDARP00000147014	290 (aa)	-	A0A2R8Q2Y4
ENSDART00000149400	-	1514	-	ENSDARP00000124561	133 (aa)	-	F8W2Y8
ENSDART00000177857	-	4629	-	ENSDARP00000144432	259 (aa)	-	Q6TGT9
ENSDART00000148384	-	2356	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000029818's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000029818's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000029818	srsf5a	96	71.318	ENSDARG00000027734	srsf5b	91	71.318
ENSDARG00000029818	srsf5a	93	58.871	ENSDARG00000105293	srsf4	64	70.588
ENSDARG00000029818	srsf5a	59	40.964	ENSDARG00000025397	srsf3a	53	41.667
ENSDARG00000029818	srsf5a	59	40.964	ENSDARG00000100815	srsf3a	53	41.667
ENSDARG00000029818	srsf5a	95	37.879	ENSDARG00000008097	srsf9	69	40.437
ENSDARG00000029818	srsf5a	59	40.964	ENSDARG00000059360	srsf3b	56	42.857
ENSDARG00000029818	srsf5a	95	39.394	ENSDARG00000017843	srsf1b	67	42.778
ENSDARG00000029818	srsf5a	59	40.476	ENSDARG00000035325	srsf7a	85	40.323
ENSDARG00000029818	srsf5a	95	43.939	ENSDARG00000057691	srsf1a	90	45.714
ENSDARG00000029818	srsf5a	92	62.698	ENSDARG00000016783	srsf6b	72	72.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000029818	srsf5a	100	84.962	ENSAPOG00000017395	srsf5a	62	87.831	Acanthochromis_polyacanthus
ENSDARG00000029818	srsf5a	100	81.618	ENSACIG00000011892	srsf5a	96	83.453	Amphilophus_citrinellus
ENSDARG00000029818	srsf5a	100	84.211	ENSAOCG00000014967	srsf5a	84	80.876	Amphiprion_ocellaris
ENSDARG00000029818	srsf5a	100	84.211	ENSAPEG00000009297	srsf5a	84	80.876	Amphiprion_percula
ENSDARG00000029818	srsf5a	100	81.618	ENSATEG00000000198	srsf5a	65	87.766	Anabas_testudineus
ENSDARG00000029818	srsf5a	100	76.296	ENSAPLG00000002469	-	71	77.368	Anas_platyrhynchos
ENSDARG00000029818	srsf5a	95	78.740	ENSACAG00000029015	-	69	77.540	Anolis_carolinensis
ENSDARG00000029818	srsf5a	100	80.714	ENSACLG00000027166	srsf5a	84	71.429	Astatotilapia_calliptera
ENSDARG00000029818	srsf5a	100	92.537	ENSAMXG00000030476	srsf5a	94	84.170	Astyanax_mexicanus
ENSDARG00000029818	srsf5a	100	78.195	ENSCPBG00000021518	-	71	79.570	Chrysemys_picta_bellii
ENSDARG00000029818	srsf5a	95	55.396	ENSCSAVG00000011376	-	78	56.633	Ciona_savignyi
ENSDARG00000029818	srsf5a	100	80.282	ENSCSEG00000008109	srsf5a	80	77.395	Cynoglossus_semilaevis
ENSDARG00000029818	srsf5a	98	67.626	ENSCVAG00000016982	srsf5a	97	76.119	Cyprinodon_variegatus
ENSDARG00000029818	srsf5a	100	80.282	ENSELUG00000020439	srsf5a	63	90.256	Esox_lucius
ENSDARG00000029818	srsf5a	100	74.436	ENSFALG00000005098	-	65	78.723	Ficedula_albicollis
ENSDARG00000029818	srsf5a	99	67.785	ENSFHEG00000003955	srsf5a	97	73.103	Fundulus_heteroclitus
ENSDARG00000029818	srsf5a	100	80.451	ENSGMOG00000000869	srsf5a	96	85.638	Gadus_morhua
ENSDARG00000029818	srsf5a	100	73.684	ENSGALG00000033259	SRSF5A	64	77.660	Gallus_gallus
ENSDARG00000029818	srsf5a	100	64.662	ENSGAFG00000018237	srsf5a	56	71.277	Gambusia_affinis
ENSDARG00000029818	srsf5a	100	84.962	ENSGACG00000011761	srsf5a	72	85.638	Gasterosteus_aculeatus
ENSDARG00000029818	srsf5a	100	78.195	ENSGAGG00000007312	-	71	79.570	Gopherus_agassizii
ENSDARG00000029818	srsf5a	100	80.576	ENSHBUG00000014048	srsf5a	84	72.093	Haplochromis_burtoni
ENSDARG00000029818	srsf5a	100	80.000	ENSHCOG00000017557	srsf5a	83	78.571	Hippocampus_comes
ENSDARG00000029818	srsf5a	100	82.734	ENSIPUG00000003439	srsf5a	100	81.362	Ictalurus_punctatus
ENSDARG00000029818	srsf5a	100	75.912	ENSKMAG00000014937	srsf5a	75	73.333	Kryptolebias_marmoratus
ENSDARG00000029818	srsf5a	100	77.083	ENSLBEG00000017153	srsf5a	74	83.500	Labrus_bergylta
ENSDARG00000029818	srsf5a	95	82.677	ENSLACG00000017874	-	71	83.511	Latimeria_chalumnae
ENSDARG00000029818	srsf5a	100	84.328	ENSLOCG00000014075	srsf5a	63	91.005	Lepisosteus_oculatus
ENSDARG00000029818	srsf5a	100	84.962	ENSMAMG00000000192	srsf5a	65	88.587	Mastacembelus_armatus
ENSDARG00000029818	srsf5a	100	80.576	ENSMZEG00005010485	srsf5a	84	71.705	Maylandia_zebra
ENSDARG00000029818	srsf5a	100	73.684	ENSMGAG00000011888	-	96	76.048	Meleagris_gallopavo
ENSDARG00000029818	srsf5a	100	85.714	ENSMMOG00000009793	srsf5a	61	89.730	Mola_mola
ENSDARG00000029818	srsf5a	100	75.188	ENSMALG00000021194	srsf5a	100	64.164	Monopterus_albus
ENSDARG00000029818	srsf5a	100	81.159	ENSNBRG00000000771	srsf5a	84	71.984	Neolamprologus_brichardi
ENSDARG00000029818	srsf5a	100	81.159	ENSONIG00000019583	srsf5a	84	71.984	Oreochromis_niloticus
ENSDARG00000029818	srsf5a	100	84.211	ENSORLG00000009268	srsf5a	68	85.638	Oryzias_latipes
ENSDARG00000029818	srsf5a	100	84.211	ENSORLG00020003281	srsf5	68	85.638	Oryzias_latipes_hni
ENSDARG00000029818	srsf5a	100	84.211	ENSORLG00015023075	srsf5	68	85.638	Oryzias_latipes_hsok
ENSDARG00000029818	srsf5a	100	84.211	ENSOMEG00000000628	srsf5a	68	86.702	Oryzias_melastigma
ENSDARG00000029818	srsf5a	100	82.963	ENSPKIG00000002054	srsf5a	69	91.053	Paramormyrops_kingsleyae
ENSDARG00000029818	srsf5a	100	76.119	ENSPSIG00000008238	-	70	77.540	Pelodiscus_sinensis
ENSDARG00000029818	srsf5a	100	75.940	ENSPMGG00000020125	srsf5a	55	79.058	Periophthalmus_magnuspinnatus
ENSDARG00000029818	srsf5a	100	75.000	ENSPFOG00000022993	srsf5a	61	78.974	Poecilia_formosa
ENSDARG00000029818	srsf5a	99	74.820	ENSPLAG00000005508	srsf5a	60	78.866	Poecilia_latipinna
ENSDARG00000029818	srsf5a	100	75.000	ENSPMEG00000016339	srsf5a	61	78.974	Poecilia_mexicana
ENSDARG00000029818	srsf5a	100	74.468	ENSPREG00000018091	srsf5a	62	78.571	Poecilia_reticulata
ENSDARG00000029818	srsf5a	100	80.576	ENSPNYG00000021245	srsf5a	84	71.705	Pundamilia_nyererei
ENSDARG00000029818	srsf5a	100	94.737	ENSPNAG00000021333	srsf5a	92	87.160	Pygocentrus_nattereri
ENSDARG00000029818	srsf5a	100	84.444	ENSSFOG00015008377	srsf5	99	79.359	Scleropages_formosus
ENSDARG00000029818	srsf5a	100	77.181	ENSSMAG00000010899	srsf5a	86	73.946	Scophthalmus_maximus
ENSDARG00000029818	srsf5a	100	82.707	ENSSDUG00000006103	srsf5a	63	88.587	Seriola_dumerili
ENSDARG00000029818	srsf5a	100	82.707	ENSSLDG00000004146	srsf5a	63	88.587	Seriola_lalandi_dorsalis
ENSDARG00000029818	srsf5a	95	76.378	ENSSPUG00000002052	-	95	61.417	Sphenodon_punctatus
ENSDARG00000029818	srsf5a	100	85.714	ENSSPAG00000002821	srsf5a	63	87.500	Stegastes_partitus
ENSDARG00000029818	srsf5a	100	75.188	ENSTGUG00000011492	-	70	78.723	Taeniopygia_guttata
ENSDARG00000029818	srsf5a	100	80.142	ENSTRUG00000022908	srsf5a	65	82.234	Takifugu_rubripes
ENSDARG00000029818	srsf5a	95	84.733	ENSXETG00000017937	srsf5a	73	80.628	Xenopus_tropicalis
ENSDARG00000029818	srsf5a	100	73.529	ENSXCOG00000015338	srsf5a	61	77.320	Xiphophorus_couchianus
ENSDARG00000029818	srsf5a	100	73.944	ENSXMAG00000012823	srsf5a	62	78.173	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process