EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000029911 (Gene tree)
Gene ID: 403025
Gene Symbol: casc3
Alias: -
Full Name: casc3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 33002 bases
Position: chr3:23428953-23461954
Accession: ZDB-GENE-040308-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000040064	Btz	PF09405.10	1.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000153732	-	564	-	-	- (aa)	-	-
ENSDART00000040065	-	3671	-	ENSDARP00000040064	754 (aa)	-	Q1ECZ4

Gene Model

Click here to download ENSDARG00000029911's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000029911's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000029911	casc3	78	66.238	ENSACIG00000000720	casc3	86	63.782	Amphilophus_citrinellus
ENSDARG00000029911	casc3	94	45.232	ENSACAG00000002674	CASC3	98	43.602	Anolis_carolinensis
ENSDARG00000029911	casc3	53	66.507	ENSANAG00000031954	-	97	68.545	Aotus_nancymaae
ENSDARG00000029911	casc3	73	56.410	ENSANAG00000034820	-	80	62.738	Aotus_nancymaae
ENSDARG00000029911	casc3	100	75.916	ENSAMXG00000032452	casc3	100	75.131	Astyanax_mexicanus
ENSDARG00000029911	casc3	93	46.853	ENSCAFG00020018882	CASC3	89	58.280	Canis_lupus_dingo
ENSDARG00000029911	casc3	72	58.197	ENSCGRG00001014706	Casc3	84	58.438	Cricetulus_griseus_chok1gshd
ENSDARG00000029911	casc3	78	57.367	ENSCGRG00000001952	Casc3	80	58.438	Cricetulus_griseus_crigri
ENSDARG00000029911	casc3	75	41.071	ENSEBUG00000010654	casc3	71	37.770	Eptatretus_burgeri
ENSDARG00000029911	casc3	92	47.820	ENSEASG00005002909	CASC3	89	57.994	Equus_asinus_asinus
ENSDARG00000029911	casc3	67	40.840	ENSEEUG00000014253	CASC3	98	39.829	Erinaceus_europaeus
ENSDARG00000029911	casc3	98	62.579	ENSELUG00000015093	casc3	99	62.453	Esox_lucius
ENSDARG00000029911	casc3	64	71.528	ENSGAGG00000008432	CASC3	87	58.962	Gopherus_agassizii
ENSDARG00000029911	casc3	98	55.959	ENSHCOG00000002664	casc3	99	55.097	Hippocampus_comes
ENSDARG00000029911	casc3	100	69.935	ENSIPUG00000002679	casc3	100	69.419	Ictalurus_punctatus
ENSDARG00000029911	casc3	79	52.615	ENSLBEG00000005435	casc3	99	52.963	Labrus_bergylta
ENSDARG00000029911	casc3	79	54.438	ENSLACG00000013200	CASC3	85	53.709	Latimeria_chalumnae
ENSDARG00000029911	casc3	99	55.159	ENSLOCG00000013518	casc3	70	76.364	Lepisosteus_oculatus
ENSDARG00000029911	casc3	75	56.869	ENSMFAG00000041496	CASC3	81	63.636	Macaca_fascicularis
ENSDARG00000029911	casc3	93	48.948	ENSMOCG00000013644	Casc3	84	57.729	Microtus_ochrogaster
ENSDARG00000029911	casc3	54	85.000	ENSMALG00000019771	casc3	72	75.969	Monopterus_albus
ENSDARG00000029911	casc3	72	58.607	MGP_CAROLIEiJ_G0017099	Casc3	84	58.385	Mus_caroli
ENSDARG00000029911	casc3	72	58.607	ENSMUSG00000078676	Casc3	84	58.385	Mus_musculus
ENSDARG00000029911	casc3	72	59.414	MGP_SPRETEiJ_G0017943	Casc3	85	58.154	Mus_spretus
ENSDARG00000029911	casc3	55	66.667	ENSMEUG00000015662	CASC3	70	64.497	Notamacropus_eugenii
ENSDARG00000029911	casc3	86	69.204	ENSONIG00000009337	casc3	99	57.233	Oreochromis_niloticus
ENSDARG00000029911	casc3	98	55.468	ENSORLG00000023125	casc3	99	55.150	Oryzias_latipes
ENSDARG00000029911	casc3	98	60.746	ENSPKIG00000023186	casc3	97	60.365	Paramormyrops_kingsleyae
ENSDARG00000029911	casc3	77	68.512	ENSPFOG00000017632	casc3	98	56.567	Poecilia_formosa
ENSDARG00000029911	casc3	57	74.265	ENSPREG00000011856	casc3	84	73.438	Poecilia_reticulata
ENSDARG00000029911	casc3	100	75.198	ENSPNAG00000015928	casc3	100	74.802	Pygocentrus_nattereri
ENSDARG00000029911	casc3	81	56.832	ENSRNOG00000009716	Casc3	96	57.895	Rattus_norvegicus
ENSDARG00000029911	casc3	98	60.887	ENSSFOG00015002645	casc3	99	61.017	Scleropages_formosus
ENSDARG00000029911	casc3	75	64.074	ENSSLDG00000020308	casc3	90	63.782	Seriola_lalandi_dorsalis
ENSDARG00000029911	casc3	94	54.105	ENSTRUG00000000673	casc3	99	54.086	Takifugu_rubripes
ENSDARG00000029911	casc3	60	65.877	ENSTBEG00000017459	CASC3	65	68.396	Tupaia_belangeri
ENSDARG00000029911	casc3	53	58.654	ENSTTRG00000016896	CASC3	55	73.333	Tursiops_truncatus
ENSDARG00000029911	casc3	76	58.147	ENSUAMG00000015116	CASC3	89	58.599	Ursus_americanus
ENSDARG00000029911	casc3	58	70.139	ENSUMAG00000017697	CASC3	84	70.139	Ursus_maritimus
ENSDARG00000029911	casc3	71	54.902	ENSXETG00000024395	casc3	81	54.317	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0030425	dendrite	-	IEA	Component
GO:0035145	exon-exon junction complex	21873635.	IBA	Component
GO:0035145	exon-exon junction complex	-	IEA	Component
GO:0042995	cell projection	-	IEA	Component
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISS	Component