EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000030949 (Gene tree)
Gene ID: 436845
Gene Symbol: srprb
Alias: wu:fk57h10|zgc:111820|zgc:92746
Full Name: SRP receptor subunit beta
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8880 bases
Position: chr15:2510761-2519640
Accession: ZDB-GENE-040718-311
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000047012	MMR_HSR1	PF01926.23	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000157078	-	464	-	-	- (aa)	-	-
ENSDART00000047013	-	1137	-	ENSDARP00000047012	266 (aa)	-	F1QSB3

Gene Model

Click here to download ENSDARG00000030949's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000030949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000030949	srprb	71	30.000	ENSDARG00000036998	arf3b	98	30.000
ENSDARG00000030949	srprb	55	30.345	ENSDARG00000016393	arf2b	94	30.345
ENSDARG00000030949	srprb	55	32.432	ENSDARG00000063223	arl14	71	32.432
ENSDARG00000030949	srprb	56	30.719	ENSDARG00000057606	arl4ca	74	30.719
ENSDARG00000030949	srprb	55	30.137	ENSDARG00000101680	arl1	80	30.137

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000030949	srprb	100	70.149	ENSAPOG00000021219	srprb	97	70.149	Acanthochromis_polyacanthus
ENSDARG00000030949	srprb	100	69.173	ENSACIG00000014621	srprb	100	69.173	Amphilophus_citrinellus
ENSDARG00000030949	srprb	100	69.030	ENSAOCG00000017265	srprb	97	69.030	Amphiprion_ocellaris
ENSDARG00000030949	srprb	100	69.030	ENSAPEG00000024541	srprb	86	69.030	Amphiprion_percula
ENSDARG00000030949	srprb	100	68.421	ENSATEG00000014016	srprb	97	68.421	Anabas_testudineus
ENSDARG00000030949	srprb	99	69.811	ENSACLG00000016748	srprb	96	69.811	Astatotilapia_calliptera
ENSDARG00000030949	srprb	100	68.421	ENSAMXG00000044118	srprb	100	68.421	Astyanax_mexicanus
ENSDARG00000030949	srprb	100	69.925	ENSCSEG00000017194	srprb	97	69.925	Cynoglossus_semilaevis
ENSDARG00000030949	srprb	100	69.173	ENSCVAG00000004221	srprb	100	69.173	Cyprinodon_variegatus
ENSDARG00000030949	srprb	100	67.293	ENSELUG00000009740	srprb	97	67.293	Esox_lucius
ENSDARG00000030949	srprb	100	68.797	ENSFHEG00000006004	srprb	100	68.797	Fundulus_heteroclitus
ENSDARG00000030949	srprb	100	64.286	ENSGMOG00000002081	srprb	98	64.286	Gadus_morhua
ENSDARG00000030949	srprb	99	67.424	ENSGAFG00000012593	srprb	99	67.424	Gambusia_affinis
ENSDARG00000030949	srprb	100	68.421	ENSGACG00000009891	srprb	98	68.421	Gasterosteus_aculeatus
ENSDARG00000030949	srprb	99	69.811	ENSHBUG00000002145	srprb	96	69.811	Haplochromis_burtoni
ENSDARG00000030949	srprb	100	69.173	ENSHCOG00000007732	srprb	99	69.173	Hippocampus_comes
ENSDARG00000030949	srprb	100	70.037	ENSIPUG00000004177	srprb	100	70.037	Ictalurus_punctatus
ENSDARG00000030949	srprb	100	66.165	ENSKMAG00000020736	srprb	100	66.165	Kryptolebias_marmoratus
ENSDARG00000030949	srprb	100	68.421	ENSLBEG00000021483	srprb	97	68.421	Labrus_bergylta
ENSDARG00000030949	srprb	99	66.541	ENSLOCG00000009740	srprb	89	66.917	Lepisosteus_oculatus
ENSDARG00000030949	srprb	100	68.421	ENSMAMG00000011876	srprb	97	68.421	Mastacembelus_armatus
ENSDARG00000030949	srprb	95	71.937	ENSMZEG00005016621	srprb	98	71.937	Maylandia_zebra
ENSDARG00000030949	srprb	100	68.421	ENSMMOG00000012550	srprb	98	68.421	Mola_mola
ENSDARG00000030949	srprb	94	73.307	ENSMALG00000012595	srprb	92	73.307	Monopterus_albus
ENSDARG00000030949	srprb	73	65.641	ENSNBRG00000004699	srprb	91	61.395	Neolamprologus_brichardi
ENSDARG00000030949	srprb	99	69.697	ENSONIG00000003788	srprb	79	69.697	Oreochromis_niloticus
ENSDARG00000030949	srprb	100	66.917	ENSORLG00000006430	srprb	97	66.917	Oryzias_latipes
ENSDARG00000030949	srprb	94	71.200	ENSORLG00020003413	srprb	91	71.200	Oryzias_latipes_hni
ENSDARG00000030949	srprb	94	70.800	ENSORLG00015000166	srprb	91	70.800	Oryzias_latipes_hsok
ENSDARG00000030949	srprb	95	71.032	ENSOMEG00000012735	srprb	92	71.032	Oryzias_melastigma
ENSDARG00000030949	srprb	100	66.292	ENSPKIG00000013147	srprb	99	66.292	Paramormyrops_kingsleyae
ENSDARG00000030949	srprb	95	68.651	ENSPMGG00000014061	srprb	92	68.651	Periophthalmus_magnuspinnatus
ENSDARG00000030949	srprb	99	67.803	ENSPFOG00000011347	srprb	96	67.803	Poecilia_formosa
ENSDARG00000030949	srprb	95	70.238	ENSPLAG00000001156	srprb	98	70.238	Poecilia_latipinna
ENSDARG00000030949	srprb	95	69.841	ENSPMEG00000012169	srprb	98	69.841	Poecilia_mexicana
ENSDARG00000030949	srprb	97	67.829	ENSPREG00000001449	srprb	100	67.829	Poecilia_reticulata
ENSDARG00000030949	srprb	99	69.811	ENSPNYG00000005911	srprb	96	69.811	Pundamilia_nyererei
ENSDARG00000030949	srprb	100	71.053	ENSPNAG00000009983	srprb	100	71.053	Pygocentrus_nattereri
ENSDARG00000030949	srprb	97	67.829	ENSSFOG00015019355	srprb	96	67.829	Scleropages_formosus
ENSDARG00000030949	srprb	100	66.541	ENSSMAG00000013202	srprb	97	66.541	Scophthalmus_maximus
ENSDARG00000030949	srprb	100	67.293	ENSSDUG00000018746	srprb	91	67.293	Seriola_dumerili
ENSDARG00000030949	srprb	100	67.669	ENSSLDG00000020560	srprb	97	67.669	Seriola_lalandi_dorsalis
ENSDARG00000030949	srprb	100	69.776	ENSSPAG00000008898	srprb	97	69.776	Stegastes_partitus
ENSDARG00000030949	srprb	100	67.293	ENSTRUG00000022463	srprb	97	67.293	Takifugu_rubripes
ENSDARG00000030949	srprb	98	67.176	ENSTNIG00000007725	srprb	100	67.176	Tetraodon_nigroviridis
ENSDARG00000030949	srprb	95	70.635	ENSXCOG00000012585	srprb	98	70.635	Xiphophorus_couchianus
ENSDARG00000030949	srprb	95	70.238	ENSXMAG00000028725	srprb	98	70.238	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component