EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000031243 (Gene tree)
Gene ID: 567724
Gene Symbol: snai3
Alias: zgc:153535
Full Name: snail family zinc finger 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7379 bases
Position: chr7:55112922-55120300
Accession: ZDB-GENE-061013-757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000068039	zf-C2H2	PF00096.26	2.7e-22	1	4
ENSDARP00000068039	zf-C2H2	PF00096.26	2.7e-22	2	4
ENSDARP00000068039	zf-C2H2	PF00096.26	2.7e-22	3	4
ENSDARP00000068039	zf-C2H2	PF00096.26	2.7e-22	4	4
ENSDARP00000068039	zf-met	PF12874.7	8.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000073549	-	1393	-	ENSDARP00000068039	283 (aa)	-	F1QNL2

Gene Model

Click here to download ENSDARG00000031243's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000031243's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000031243	snai3	99	42.761	ENSDARG00000046019	snai1b	99	44.482
ENSDARG00000031243	snai3	99	51.773	ENSDARG00000040046	snai2	99	51.773
ENSDARG00000031243	snai3	99	43.902	ENSDARG00000056995	snai1a	100	45.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000031243	snai3	99	48.993	ENSACAG00000006701	-	99	48.993	Anolis_carolinensis
ENSDARG00000031243	snai3	100	52.145	ENSOANG00000011365	-	100	52.145	Ornithorhynchus_anatinus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function