EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000031346 (Gene tree)
Gene ID: 393889
Gene Symbol: rbm17
Alias: zgc:55840
Full Name: RNA binding motif protein 17
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 18488 bases
Position: chr4:25497104-25515591
Accession: ZDB-GENE-040426-817
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000044042	RRM_1	PF00076.22	3.5e-06	1	1
ENSDARP00000153954	RRM_1	PF00076.22	3.5e-06	1	1
ENSDARP00000044042	G-patch	PF01585.23	1.4e-12	1	1
ENSDARP00000153954	G-patch	PF01585.23	1.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000142276	-	644	-	ENSDARP00000118863	176 (aa)	-	Q1LVD1
ENSDART00000044043	-	1759	XM_005164814	ENSDARP00000044042	418 (aa)	XP_005164871	Q7ZVN6
ENSDART00000186524	-	1276	-	ENSDARP00000153954	418 (aa)	-	Q7ZVN6

Gene Model

Click here to download ENSDARG00000031346's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000031346's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000031346	rbm17	100	78.118	ENSG00000134453	RBM17	100	78.118	Homo_sapiens
ENSDARG00000031346	rbm17	99	81.384	ENSAPOG00000007101	rbm17	99	81.384	Acanthochromis_polyacanthus
ENSDARG00000031346	rbm17	100	78.588	ENSAMEG00000002107	RBM17	100	78.588	Ailuropoda_melanoleuca
ENSDARG00000031346	rbm17	100	76.179	ENSACIG00000006251	rbm17	100	75.000	Amphilophus_citrinellus
ENSDARG00000031346	rbm17	100	81.324	ENSAOCG00000014892	rbm17	100	81.324	Amphiprion_ocellaris
ENSDARG00000031346	rbm17	100	81.324	ENSAPEG00000022779	rbm17	100	81.324	Amphiprion_percula
ENSDARG00000031346	rbm17	100	80.986	ENSATEG00000004406	rbm17	100	78.404	Anabas_testudineus
ENSDARG00000031346	rbm17	100	77.882	ENSAPLG00000004190	RBM17	100	77.882	Anas_platyrhynchos
ENSDARG00000031346	rbm17	90	73.522	ENSACAG00000005418	RBM17	99	73.779	Anolis_carolinensis
ENSDARG00000031346	rbm17	100	68.545	ENSANAG00000019330	-	95	84.483	Aotus_nancymaae
ENSDARG00000031346	rbm17	100	78.118	ENSANAG00000030127	RBM17	97	86.667	Aotus_nancymaae
ENSDARG00000031346	rbm17	100	75.476	ENSACLG00000003928	rbm17	100	74.109	Astatotilapia_calliptera
ENSDARG00000031346	rbm17	100	86.730	ENSAMXG00000005853	rbm17	100	85.782	Astyanax_mexicanus
ENSDARG00000031346	rbm17	100	77.882	ENSBTAG00000021951	RBM17	100	77.882	Bos_taurus
ENSDARG00000031346	rbm17	100	76.706	ENSBTAG00000011094	-	100	76.706	Bos_taurus
ENSDARG00000031346	rbm17	74	33.856	WBGene00010233	F58B3.7	91	31.941	Caenorhabditis_elegans
ENSDARG00000031346	rbm17	100	78.118	ENSCJAG00000020573	RBM17	100	78.118	Callithrix_jacchus
ENSDARG00000031346	rbm17	100	78.588	ENSCAFG00000005206	RBM17	100	78.588	Canis_familiaris
ENSDARG00000031346	rbm17	100	74.109	ENSCAFG00020005420	RBM17	100	76.485	Canis_lupus_dingo
ENSDARG00000031346	rbm17	100	75.765	ENSCHIG00000019921	-	100	75.765	Capra_hircus
ENSDARG00000031346	rbm17	100	77.882	ENSCHIG00000023204	-	100	77.882	Capra_hircus
ENSDARG00000031346	rbm17	100	77.882	ENSTSYG00000001165	RBM17	98	87.179	Carlito_syrichta
ENSDARG00000031346	rbm17	96	59.069	ENSCAPG00000006275	RBM17	100	65.445	Cavia_aperea
ENSDARG00000031346	rbm17	100	75.355	ENSCPOG00000005679	RBM17	100	76.941	Cavia_porcellus
ENSDARG00000031346	rbm17	100	78.118	ENSCCAG00000018655	RBM17	97	86.667	Cebus_capucinus
ENSDARG00000031346	rbm17	100	78.118	ENSCATG00000041566	RBM17	97	86.667	Cercocebus_atys
ENSDARG00000031346	rbm17	100	78.588	ENSCLAG00000012195	RBM17	99	78.588	Chinchilla_lanigera
ENSDARG00000031346	rbm17	100	78.118	ENSCSAG00000013564	RBM17	100	78.118	Chlorocebus_sabaeus
ENSDARG00000031346	rbm17	93	61.675	ENSCHOG00000005131	RBM17	100	61.675	Choloepus_hoffmanni
ENSDARG00000031346	rbm17	100	77.176	ENSCPBG00000019836	RBM17	100	77.176	Chrysemys_picta_bellii
ENSDARG00000031346	rbm17	100	45.390	ENSCSAVG00000008782	-	100	45.390	Ciona_savignyi
ENSDARG00000031346	rbm17	98	70.098	ENSCANG00000023715	-	99	70.098	Colobus_angolensis_palliatus
ENSDARG00000031346	rbm17	100	77.882	ENSCANG00000030987	RBM17	97	86.667	Colobus_angolensis_palliatus
ENSDARG00000031346	rbm17	100	78.588	ENSCGRG00001013842	Rbm17	100	78.588	Cricetulus_griseus_chok1gshd
ENSDARG00000031346	rbm17	100	62.291	ENSCGRG00001009256	-	100	59.189	Cricetulus_griseus_chok1gshd
ENSDARG00000031346	rbm17	100	78.588	ENSCGRG00000006907	Rbm17	100	78.588	Cricetulus_griseus_crigri
ENSDARG00000031346	rbm17	100	79.953	ENSCSEG00000018164	rbm17	100	79.717	Cynoglossus_semilaevis
ENSDARG00000031346	rbm17	100	74.048	ENSCVAG00000002476	rbm17	100	72.209	Cyprinodon_variegatus
ENSDARG00000031346	rbm17	100	78.588	ENSDNOG00000035920	RBM17	100	78.588	Dasypus_novemcinctus
ENSDARG00000031346	rbm17	99	37.307	FBgn0086683	Spf45	99	35.556	Drosophila_melanogaster
ENSDARG00000031346	rbm17	86	79.204	ENSETEG00000006642	RBM17	84	79.204	Echinops_telfairi
ENSDARG00000031346	rbm17	64	66.667	ENSEBUG00000010253	rbm17	81	66.667	Eptatretus_burgeri
ENSDARG00000031346	rbm17	100	73.872	ENSEASG00005019205	-	100	76.485	Equus_asinus_asinus
ENSDARG00000031346	rbm17	93	75.381	ENSEASG00005009236	-	100	75.381	Equus_asinus_asinus
ENSDARG00000031346	rbm17	100	66.983	ENSECAG00000008939	RBM17	100	69.121	Equus_caballus
ENSDARG00000031346	rbm17	100	69.412	ENSECAG00000001379	-	100	69.412	Equus_caballus
ENSDARG00000031346	rbm17	86	62.228	ENSEEUG00000013077	RBM17	100	62.228	Erinaceus_europaeus
ENSDARG00000031346	rbm17	100	80.093	ENSELUG00000006440	rbm17	100	78.472	Esox_lucius
ENSDARG00000031346	rbm17	100	78.588	ENSFCAG00000031988	RBM17	100	78.588	Felis_catus
ENSDARG00000031346	rbm17	100	77.647	ENSFALG00000001790	RBM17	100	77.647	Ficedula_albicollis
ENSDARG00000031346	rbm17	100	78.588	ENSFDAG00000007470	RBM17	100	78.588	Fukomys_damarensis
ENSDARG00000031346	rbm17	100	80.751	ENSFHEG00000001266	rbm17	100	76.674	Fundulus_heteroclitus
ENSDARG00000031346	rbm17	99	77.088	ENSGMOG00000008438	rbm17	100	75.359	Gadus_morhua
ENSDARG00000031346	rbm17	100	77.647	ENSGALG00000006332	RBM17	100	77.647	Gallus_gallus
ENSDARG00000031346	rbm17	100	79.196	ENSGAFG00000019879	rbm17	100	76.359	Gambusia_affinis
ENSDARG00000031346	rbm17	99	78.774	ENSGACG00000019174	rbm17	99	76.179	Gasterosteus_aculeatus
ENSDARG00000031346	rbm17	100	77.176	ENSGAGG00000019906	RBM17	100	77.176	Gopherus_agassizii
ENSDARG00000031346	rbm17	100	80.332	ENSHBUG00000016624	rbm17	100	80.332	Haplochromis_burtoni
ENSDARG00000031346	rbm17	100	78.588	ENSHGLG00000011580	RBM17	100	78.588	Heterocephalus_glaber_female
ENSDARG00000031346	rbm17	100	78.588	ENSHGLG00100010460	RBM17	100	78.588	Heterocephalus_glaber_male
ENSDARG00000031346	rbm17	100	64.115	ENSHGLG00100010556	-	100	61.962	Heterocephalus_glaber_male
ENSDARG00000031346	rbm17	99	78.385	ENSHCOG00000010865	rbm17	100	75.297	Hippocampus_comes
ENSDARG00000031346	rbm17	100	87.381	ENSIPUG00000007699	Rbm17	100	87.381	Ictalurus_punctatus
ENSDARG00000031346	rbm17	100	78.588	ENSSTOG00000013591	RBM17	100	78.588	Ictidomys_tridecemlineatus
ENSDARG00000031346	rbm17	100	78.588	ENSJJAG00000022886	Rbm17	100	78.588	Jaculus_jaculus
ENSDARG00000031346	rbm17	100	57.412	ENSJJAG00000000993	-	100	56.941	Jaculus_jaculus
ENSDARG00000031346	rbm17	100	78.169	ENSKMAG00000021400	rbm17	100	76.761	Kryptolebias_marmoratus
ENSDARG00000031346	rbm17	100	80.000	ENSLBEG00000000881	rbm17	100	77.176	Labrus_bergylta
ENSDARG00000031346	rbm17	99	67.294	ENSLACG00000017297	RBM17	99	66.824	Latimeria_chalumnae
ENSDARG00000031346	rbm17	100	80.233	ENSLOCG00000015659	rbm17	100	77.674	Lepisosteus_oculatus
ENSDARG00000031346	rbm17	100	78.353	ENSLAFG00000011629	RBM17	100	78.353	Loxodonta_africana
ENSDARG00000031346	rbm17	100	78.118	ENSMFAG00000035521	RBM17	97	86.667	Macaca_fascicularis
ENSDARG00000031346	rbm17	100	78.118	ENSMMUG00000015152	RBM17	97	86.667	Macaca_mulatta
ENSDARG00000031346	rbm17	100	78.118	ENSMNEG00000017264	RBM17	97	86.667	Macaca_nemestrina
ENSDARG00000031346	rbm17	100	78.118	ENSMLEG00000029340	RBM17	97	86.667	Mandrillus_leucophaeus
ENSDARG00000031346	rbm17	100	79.577	ENSMAMG00000000387	rbm17	100	76.995	Mastacembelus_armatus
ENSDARG00000031346	rbm17	100	80.332	ENSMZEG00005015179	rbm17	100	80.332	Maylandia_zebra
ENSDARG00000031346	rbm17	100	77.283	ENSMGAG00000003981	RBM17	100	77.283	Meleagris_gallopavo
ENSDARG00000031346	rbm17	100	78.588	ENSMAUG00000019247	Rbm17	100	78.588	Mesocricetus_auratus
ENSDARG00000031346	rbm17	100	72.535	ENSMICG00000041489	-	100	72.535	Microcebus_murinus
ENSDARG00000031346	rbm17	100	78.118	ENSMICG00000003976	-	100	78.118	Microcebus_murinus
ENSDARG00000031346	rbm17	100	78.588	ENSMOCG00000011847	Rbm17	100	78.588	Microtus_ochrogaster
ENSDARG00000031346	rbm17	93	63.544	ENSMOCG00000014517	-	99	64.304	Microtus_ochrogaster
ENSDARG00000031346	rbm17	100	73.364	ENSMMOG00000010264	rbm17	100	70.794	Mola_mola
ENSDARG00000031346	rbm17	100	77.647	ENSMODG00000016648	RBM17	100	77.647	Monodelphis_domestica
ENSDARG00000031346	rbm17	100	80.094	ENSMALG00000010597	rbm17	100	78.454	Monopterus_albus
ENSDARG00000031346	rbm17	100	78.588	MGP_CAROLIEiJ_G0023173	Rbm17	100	78.588	Mus_caroli
ENSDARG00000031346	rbm17	100	78.588	ENSMUSG00000037197	Rbm17	100	78.588	Mus_musculus
ENSDARG00000031346	rbm17	100	78.353	MGP_PahariEiJ_G0019233	Rbm17	100	78.353	Mus_pahari
ENSDARG00000031346	rbm17	100	78.588	MGP_SPRETEiJ_G0024091	Rbm17	100	78.588	Mus_spretus
ENSDARG00000031346	rbm17	88	75.936	ENSMPUG00000016359	RBM17	98	75.936	Mustela_putorius_furo
ENSDARG00000031346	rbm17	100	76.761	ENSMLUG00000002302	-	100	76.761	Myotis_lucifugus
ENSDARG00000031346	rbm17	100	75.294	ENSMLUG00000025709	-	100	75.294	Myotis_lucifugus
ENSDARG00000031346	rbm17	100	78.588	ENSNGAG00000000741	Rbm17	100	78.588	Nannospalax_galili
ENSDARG00000031346	rbm17	100	54.588	ENSNGAG00000000663	-	100	53.647	Nannospalax_galili
ENSDARG00000031346	rbm17	100	74.286	ENSNBRG00000018148	rbm17	100	76.010	Neolamprologus_brichardi
ENSDARG00000031346	rbm17	100	78.118	ENSNLEG00000033350	RBM17	97	86.667	Nomascus_leucogenys
ENSDARG00000031346	rbm17	100	72.471	ENSMEUG00000011347	RBM17	100	72.471	Notamacropus_eugenii
ENSDARG00000031346	rbm17	100	68.235	ENSOPRG00000002993	RBM17	100	68.235	Ochotona_princeps
ENSDARG00000031346	rbm17	100	78.404	ENSODEG00000004393	RBM17	100	78.404	Octodon_degus
ENSDARG00000031346	rbm17	97	61.369	ENSODEG00000007286	-	99	61.369	Octodon_degus
ENSDARG00000031346	rbm17	100	80.569	ENSONIG00000011838	rbm17	100	80.569	Oreochromis_niloticus
ENSDARG00000031346	rbm17	100	76.941	ENSOANG00000015455	RBM17	100	77.647	Ornithorhynchus_anatinus
ENSDARG00000031346	rbm17	100	79.812	ENSORLG00000028798	rbm17	100	79.812	Oryzias_latipes
ENSDARG00000031346	rbm17	100	80.047	ENSORLG00020004593	rbm17	98	80.047	Oryzias_latipes_hni
ENSDARG00000031346	rbm17	100	80.047	ENSORLG00015000033	rbm17	100	79.433	Oryzias_latipes_hsok
ENSDARG00000031346	rbm17	100	79.577	ENSOMEG00000012060	rbm17	100	79.577	Oryzias_melastigma
ENSDARG00000031346	rbm17	100	78.588	ENSOGAG00000015687	RBM17	100	78.588	Otolemur_garnettii
ENSDARG00000031346	rbm17	100	77.882	ENSOARG00000012975	RBM17	100	77.882	Ovis_aries
ENSDARG00000031346	rbm17	100	78.118	ENSPPAG00000032347	RBM17	97	86.667	Pan_paniscus
ENSDARG00000031346	rbm17	100	78.588	ENSPPRG00000010706	RBM17	100	78.588	Panthera_pardus
ENSDARG00000031346	rbm17	100	78.588	ENSPTIG00000007596	RBM17	100	78.588	Panthera_tigris_altaica
ENSDARG00000031346	rbm17	100	78.118	ENSPTRG00000002265	RBM17	97	86.667	Pan_troglodytes
ENSDARG00000031346	rbm17	100	78.118	ENSPANG00000023425	RBM17	97	86.667	Papio_anubis
ENSDARG00000031346	rbm17	100	78.341	ENSPKIG00000005048	-	100	76.389	Paramormyrops_kingsleyae
ENSDARG00000031346	rbm17	100	80.653	ENSPKIG00000025526	rbm17	100	77.880	Paramormyrops_kingsleyae
ENSDARG00000031346	rbm17	100	76.168	ENSPSIG00000012332	RBM17	100	76.168	Pelodiscus_sinensis
ENSDARG00000031346	rbm17	100	74.762	ENSPMGG00000007980	rbm17	100	74.883	Periophthalmus_magnuspinnatus
ENSDARG00000031346	rbm17	100	78.588	ENSPEMG00000014320	Rbm17	100	78.588	Peromyscus_maniculatus_bairdii
ENSDARG00000031346	rbm17	100	77.283	ENSPCIG00000019260	-	100	77.283	Phascolarctos_cinereus
ENSDARG00000031346	rbm17	100	79.529	ENSPFOG00000013271	rbm17	100	76.706	Poecilia_formosa
ENSDARG00000031346	rbm17	100	79.294	ENSPLAG00000004455	rbm17	100	76.471	Poecilia_latipinna
ENSDARG00000031346	rbm17	100	79.529	ENSPMEG00000014864	rbm17	100	76.706	Poecilia_mexicana
ENSDARG00000031346	rbm17	100	79.905	ENSPREG00000015589	rbm17	100	77.069	Poecilia_reticulata
ENSDARG00000031346	rbm17	100	78.118	ENSPPYG00000002067	RBM17	100	78.118	Pongo_abelii
ENSDARG00000031346	rbm17	99	58.629	ENSPPYG00000019881	-	100	58.392	Pongo_abelii
ENSDARG00000031346	rbm17	81	54.755	ENSPPYG00000019042	-	100	54.467	Pongo_abelii
ENSDARG00000031346	rbm17	100	71.294	ENSPCAG00000016879	RBM17	100	71.294	Procavia_capensis
ENSDARG00000031346	rbm17	100	78.118	ENSPCOG00000027881	RBM17	100	78.118	Propithecus_coquereli
ENSDARG00000031346	rbm17	100	70.353	ENSPVAG00000015499	RBM17	100	69.882	Pteropus_vampyrus
ENSDARG00000031346	rbm17	100	71.292	ENSPNYG00000015274	rbm17	100	70.000	Pundamilia_nyererei
ENSDARG00000031346	rbm17	100	88.389	ENSPNAG00000030046	rbm17	100	88.389	Pygocentrus_nattereri
ENSDARG00000031346	rbm17	100	78.588	ENSRNOG00000018767	Rbm17	100	78.588	Rattus_norvegicus
ENSDARG00000031346	rbm17	100	78.118	ENSRBIG00000043727	RBM17	97	86.667	Rhinopithecus_bieti
ENSDARG00000031346	rbm17	100	78.118	ENSRROG00000044142	RBM17	97	86.667	Rhinopithecus_roxellana
ENSDARG00000031346	rbm17	100	77.882	ENSSBOG00000031661	-	97	85.000	Saimiri_boliviensis_boliviensis
ENSDARG00000031346	rbm17	100	69.647	ENSSBOG00000023653	-	100	66.279	Saimiri_boliviensis_boliviensis
ENSDARG00000031346	rbm17	100	78.353	ENSSHAG00000012480	-	100	78.353	Sarcophilus_harrisii
ENSDARG00000031346	rbm17	100	80.751	ENSSFOG00015009892	rbm17	100	77.934	Scleropages_formosus
ENSDARG00000031346	rbm17	100	78.009	ENSSMAG00000012368	rbm17	100	78.009	Scophthalmus_maximus
ENSDARG00000031346	rbm17	100	79.446	ENSSDUG00000015015	rbm17	100	77.136	Seriola_dumerili
ENSDARG00000031346	rbm17	100	79.446	ENSSLDG00000014486	rbm17	100	77.136	Seriola_lalandi_dorsalis
ENSDARG00000031346	rbm17	50	77.320	ENSSARG00000001792	-	75	77.320	Sorex_araneus
ENSDARG00000031346	rbm17	99	77.123	ENSSPUG00000001036	RBM17	99	77.123	Sphenodon_punctatus
ENSDARG00000031346	rbm17	100	80.751	ENSSPAG00000002338	rbm17	100	77.934	Stegastes_partitus
ENSDARG00000031346	rbm17	100	77.647	ENSSSCG00000011134	RBM17	100	77.647	Sus_scrofa
ENSDARG00000031346	rbm17	100	77.412	ENSTGUG00000002013	RBM17	100	77.412	Taeniopygia_guttata
ENSDARG00000031346	rbm17	100	80.189	ENSTRUG00000010698	rbm17	100	77.305	Takifugu_rubripes
ENSDARG00000031346	rbm17	100	80.986	ENSTNIG00000006892	rbm17	100	77.934	Tetraodon_nigroviridis
ENSDARG00000031346	rbm17	100	59.906	ENSTBEG00000014686	RBM17	100	62.118	Tupaia_belangeri
ENSDARG00000031346	rbm17	90	76.302	ENSTTRG00000001344	RBM17	100	76.302	Tursiops_truncatus
ENSDARG00000031346	rbm17	100	74.109	ENSUAMG00000009499	RBM17	100	76.485	Ursus_americanus
ENSDARG00000031346	rbm17	100	78.588	ENSUMAG00000012237	RBM17	100	78.588	Ursus_maritimus
ENSDARG00000031346	rbm17	100	67.294	ENSVPAG00000005497	RBM17	100	67.294	Vicugna_pacos
ENSDARG00000031346	rbm17	100	74.109	ENSVVUG00000006780	RBM17	100	76.485	Vulpes_vulpes
ENSDARG00000031346	rbm17	99	75.118	ENSXETG00000018123	rbm17	100	75.118	Xenopus_tropicalis
ENSDARG00000031346	rbm17	100	79.905	ENSXMAG00000008674	rbm17	100	77.069	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000380	alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process