EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000031637 (Gene tree)
Gene ID: 100126012
Gene Symbol: pan3
Alias: zgc:171628
Full Name: poly(A) specific ribonuclease subunit PAN3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 28397 bases
Position: chr24:21720304-21748700
Accession: ZDB-GENE-070928-13
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000112767	zf-CCCH	PF00642.24	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000147250	-	1409	-	ENSDARP00000112767	213 (aa)	-	F1RCV8
ENSDART00000132364	-	555	-	-	- (aa)	-	-
ENSDART00000137952	-	2757	-	-	- (aa)	-	-
ENSDART00000048273	-	4368	-	ENSDARP00000048272	799 (aa)	-	E7EXP6

Gene Model

Click here to download ENSDARG00000031637's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000031637's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000031637	pan3	99	76.818	ENSELUG00000014375	pan3	95	76.818	Esox_lucius
ENSDARG00000031637	pan3	96	63.679	ENSPKIG00000018576	pan3	74	63.679	Paramormyrops_kingsleyae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	IEA	Process
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0031251	PAN complex	21873635.	IBA	Component
GO:0031251	PAN complex	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function