EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000032725 (Gene tree)
Gene ID: 337810
Gene Symbol: rps27a
Alias: hm:zeh0386|ik:tdsubc_1f2|tdsubc_1f2|xx:tdsubc_1f2|zgc:66168
Full Name: ribosomal protein S27a
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 2834 bases
Position: chr6:6270686-6273519
Accession: ZDB-GENE-030131-10018
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000107110	Ribosomal_S27	PF01599.19	5.6e-27	1	1
ENSDARP00000128775	Ribosomal_S27	PF01599.19	5.6e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000157035	-	820	-	-	- (aa)	-	-
ENSDART00000154932	-	601	-	-	- (aa)	-	-
ENSDART00000156817	-	684	-	-	- (aa)	-	-
ENSDART00000129530	-	668	-	ENSDARP00000107110	156 (aa)	-	Q7SXA3
ENSDART00000156859	-	721	-	ENSDARP00000128775	156 (aa)	-	Q7SXA3

Gene Model

Click here to download ENSDARG00000032725's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000032725's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000032725	rps27a	100	100.000	ENSAPOG00000022780	rps27a	100	100.000	Acanthochromis_polyacanthus
ENSDARG00000032725	rps27a	100	100.000	ENSAOCG00000000282	rps27a	100	100.000	Amphiprion_ocellaris
ENSDARG00000032725	rps27a	100	100.000	ENSAPEG00000010300	rps27a	100	100.000	Amphiprion_percula
ENSDARG00000032725	rps27a	100	99.359	ENSATEG00000021507	rps27a	100	99.359	Anabas_testudineus
ENSDARG00000032725	rps27a	100	100.000	ENSAMXG00000040689	rps27a	100	100.000	Astyanax_mexicanus
ENSDARG00000032725	rps27a	76	99.153	ENSCJAG00000046243	-	100	99.153	Callithrix_jacchus
ENSDARG00000032725	rps27a	100	98.077	ENSTSYG00000000845	-	100	98.077	Carlito_syrichta
ENSDARG00000032725	rps27a	100	89.103	ENSCING00000005834	r27a	100	89.103	Ciona_intestinalis
ENSDARG00000032725	rps27a	99	81.169	ENSCSAVG00000001323	-	95	81.169	Ciona_savignyi
ENSDARG00000032725	rps27a	100	76.923	ENSCGRG00001008358	-	100	76.282	Cricetulus_griseus_chok1gshd
ENSDARG00000032725	rps27a	100	100.000	ENSCSEG00000001603	rps27a	100	100.000	Cynoglossus_semilaevis
ENSDARG00000032725	rps27a	100	100.000	ENSCVAG00000004811	rps27a	86	100.000	Cyprinodon_variegatus
ENSDARG00000032725	rps27a	100	91.667	FBgn0003942	RpS27A	100	91.667	Drosophila_melanogaster
ENSDARG00000032725	rps27a	100	94.231	ENSEBUG00000007396	rps27a	100	94.231	Eptatretus_burgeri
ENSDARG00000032725	rps27a	100	100.000	ENSELUG00000004527	rps27a	100	100.000	Esox_lucius
ENSDARG00000032725	rps27a	100	100.000	ENSFHEG00000001180	rps27a	100	100.000	Fundulus_heteroclitus
ENSDARG00000032725	rps27a	100	100.000	ENSGMOG00000011896	rps27a	91	100.000	Gadus_morhua
ENSDARG00000032725	rps27a	100	100.000	ENSGAFG00000014202	rps27a	100	100.000	Gambusia_affinis
ENSDARG00000032725	rps27a	100	100.000	ENSGACG00000011558	rps27a	100	100.000	Gasterosteus_aculeatus
ENSDARG00000032725	rps27a	100	100.000	ENSHBUG00000003375	rps27a	100	100.000	Haplochromis_burtoni
ENSDARG00000032725	rps27a	100	100.000	ENSHCOG00000019712	rps27a	100	100.000	Hippocampus_comes
ENSDARG00000032725	rps27a	100	100.000	ENSIPUG00000015317	rps27a	100	100.000	Ictalurus_punctatus
ENSDARG00000032725	rps27a	100	100.000	ENSKMAG00000003156	rps27a	100	100.000	Kryptolebias_marmoratus
ENSDARG00000032725	rps27a	100	100.000	ENSLBEG00000000541	rps27a	100	100.000	Labrus_bergylta
ENSDARG00000032725	rps27a	100	98.077	ENSLACG00000007672	rps27a	100	98.077	Latimeria_chalumnae
ENSDARG00000032725	rps27a	100	100.000	ENSLOCG00000015551	rps27a	96	100.000	Lepisosteus_oculatus
ENSDARG00000032725	rps27a	100	97.436	ENSMNEG00000026442	-	100	97.436	Macaca_nemestrina
ENSDARG00000032725	rps27a	88	98.551	ENSMLEG00000003375	-	100	98.551	Mandrillus_leucophaeus
ENSDARG00000032725	rps27a	100	100.000	ENSMAMG00000022556	rps27a	100	100.000	Mastacembelus_armatus
ENSDARG00000032725	rps27a	100	100.000	ENSMZEG00005004484	rps27a	100	100.000	Maylandia_zebra
ENSDARG00000032725	rps27a	100	99.359	ENSMMOG00000007733	rps27a	100	99.359	Mola_mola
ENSDARG00000032725	rps27a	100	100.000	ENSMALG00000014759	rps27a	100	100.000	Monopterus_albus
ENSDARG00000032725	rps27a	100	100.000	ENSNBRG00000010708	rps27a	100	100.000	Neolamprologus_brichardi
ENSDARG00000032725	rps27a	100	100.000	ENSONIG00000016075	rps27a	96	100.000	Oreochromis_niloticus
ENSDARG00000032725	rps27a	100	99.359	ENSORLG00000029546	rps27a	100	99.359	Oryzias_latipes
ENSDARG00000032725	rps27a	100	86.111	ENSORLG00020017665	-	100	86.111	Oryzias_latipes_hni
ENSDARG00000032725	rps27a	100	99.359	ENSORLG00015003772	rps27a	100	99.359	Oryzias_latipes_hsok
ENSDARG00000032725	rps27a	100	99.359	ENSOMEG00000022866	rps27a	100	99.359	Oryzias_melastigma
ENSDARG00000032725	rps27a	92	88.889	ENSOGAG00000029795	-	92	88.194	Otolemur_garnettii
ENSDARG00000032725	rps27a	100	95.513	ENSOARG00000014935	-	91	95.513	Ovis_aries
ENSDARG00000032725	rps27a	100	96.795	ENSPPAG00000023609	-	100	96.795	Pan_paniscus
ENSDARG00000032725	rps27a	100	98.077	ENSPTRG00000023227	-	100	98.077	Pan_troglodytes
ENSDARG00000032725	rps27a	100	99.359	ENSPKIG00000021492	rps27a	100	99.359	Paramormyrops_kingsleyae
ENSDARG00000032725	rps27a	78	92.623	ENSPMAG00000006335	-	100	92.623	Petromyzon_marinus
ENSDARG00000032725	rps27a	100	100.000	ENSPFOG00000013152	rps27a	100	100.000	Poecilia_formosa
ENSDARG00000032725	rps27a	100	100.000	ENSPLAG00000012639	rps27a	100	100.000	Poecilia_latipinna
ENSDARG00000032725	rps27a	100	100.000	ENSPMEG00000015419	rps27a	100	100.000	Poecilia_mexicana
ENSDARG00000032725	rps27a	100	100.000	ENSPREG00000012478	rps27a	100	100.000	Poecilia_reticulata
ENSDARG00000032725	rps27a	97	96.689	ENSPVAG00000016471	-	100	96.689	Pteropus_vampyrus
ENSDARG00000032725	rps27a	100	100.000	ENSPNYG00000019989	rps27a	100	100.000	Pundamilia_nyererei
ENSDARG00000032725	rps27a	100	100.000	ENSPNAG00000002903	rps27a	100	100.000	Pygocentrus_nattereri
ENSDARG00000032725	rps27a	97	82.781	YLR167W	RPS31	99	82.781	Saccharomyces_cerevisiae
ENSDARG00000032725	rps27a	99	99.355	ENSSFOG00015017733	rps27a	88	99.355	Scleropages_formosus
ENSDARG00000032725	rps27a	100	100.000	ENSSMAG00000004941	rps27a	100	100.000	Scophthalmus_maximus
ENSDARG00000032725	rps27a	100	100.000	ENSSDUG00000003170	rps27a	100	100.000	Seriola_dumerili
ENSDARG00000032725	rps27a	99	83.766	ENSSLDG00000001310	-	99	83.766	Seriola_lalandi_dorsalis
ENSDARG00000032725	rps27a	100	100.000	ENSSPAG00000022744	rps27a	100	100.000	Stegastes_partitus
ENSDARG00000032725	rps27a	100	100.000	ENSTRUG00000010963	rps27a	100	100.000	Takifugu_rubripes
ENSDARG00000032725	rps27a	90	98.571	ENSTNIG00000018689	rps27a	100	98.571	Tetraodon_nigroviridis
ENSDARG00000032725	rps27a	100	100.000	ENSXCOG00000003780	rps27a	100	100.000	Xiphophorus_couchianus
ENSDARG00000032725	rps27a	100	100.000	ENSXMAG00000000171	rps27a	100	100.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0019941	modification-dependent protein catabolic process	21873635.	IBA	Process
GO:0022627	cytosolic small ribosomal subunit	21873635.	IBA	Component
GO:0031386	protein tag	21873635.	IBA	Function
GO:0031625	ubiquitin protein ligase binding	21873635.	IBA	Function