EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000033537 (Gene tree)
Gene ID: 562774
Gene Symbol: p4ha1a
Alias: si:ch211-146f4.5
Full Name: prolyl 4-hydroxylase%2C alpha polypeptide I a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 43547 bases
Position: chr12:9542124-9585670
Accession: ZDB-GENE-040724-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000137147	2OG-FeII_Oxy	PF03171.20	7e-09	1	1
ENSDARP00000048492	2OG-FeII_Oxy	PF03171.20	7e-09	1	1
ENSDARP00000105672	2OG-FeII_Oxy	PF03171.20	7.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000166178	-	1569	-	ENSDARP00000137147	522 (aa)	-	A0A0R4IQ20
ENSDART00000048493	-	1626	XM_009306502	ENSDARP00000048492	541 (aa)	XP_009304777	F1QCL7
ENSDART00000127952	-	2239	XM_009306501	ENSDARP00000105672	541 (aa)	XP_009304776	E7FEB4

Gene Model

Click here to download ENSDARG00000033537's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00330	Arginine and proline metabolism	KEGG
dre01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000033537's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000033537	p4ha1a	94	39.072	ENSDARG00000094609	si:ch73-68b22.2	99	39.072
ENSDARG00000033537	p4ha1a	96	76.000	ENSDARG00000071082	p4ha1b	97	76.000
ENSDARG00000033537	p4ha1a	91	54.741	ENSDARG00000017038	zgc:152670	93	54.741
ENSDARG00000033537	p4ha1a	99	65.056	ENSDARG00000010085	p4ha2	97	65.900

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000033537	p4ha1a	77	61.005	ENSAPOG00000008101	p4ha1a	85	61.005	Acanthochromis_polyacanthus
ENSDARG00000033537	p4ha1a	52	55.762	ENSAPOG00000008032	p4ha1a	99	60.729	Acanthochromis_polyacanthus
ENSDARG00000033537	p4ha1a	97	76.571	ENSACIG00000014303	p4ha1a	96	78.558	Amphilophus_citrinellus
ENSDARG00000033537	p4ha1a	100	67.403	ENSAOCG00000005531	p4ha1a	100	67.403	Amphiprion_ocellaris
ENSDARG00000033537	p4ha1a	100	75.691	ENSAOCG00000005514	-	100	75.691	Amphiprion_ocellaris
ENSDARG00000033537	p4ha1a	100	75.138	ENSAPEG00000010462	-	100	75.138	Amphiprion_percula
ENSDARG00000033537	p4ha1a	99	84.502	ENSAMXG00000018364	p4ha1a	96	86.233	Astyanax_mexicanus
ENSDARG00000033537	p4ha1a	96	73.218	ENSCSEG00000001857	-	95	75.362	Cynoglossus_semilaevis
ENSDARG00000033537	p4ha1a	99	72.097	ENSCVAG00000020081	p4ha1a	99	72.097	Cyprinodon_variegatus
ENSDARG00000033537	p4ha1a	99	78.388	ENSELUG00000005174	p4ha1a	100	78.388	Esox_lucius
ENSDARG00000033537	p4ha1a	99	76.623	ENSMAMG00000010119	p4ha1a	99	76.623	Mastacembelus_armatus
ENSDARG00000033537	p4ha1a	99	71.723	ENSMMOG00000009210	-	95	73.643	Mola_mola
ENSDARG00000033537	p4ha1a	99	75.047	ENSMALG00000013083	-	96	80.435	Monopterus_albus
ENSDARG00000033537	p4ha1a	98	70.245	ENSORLG00000014906	-	94	70.056	Oryzias_latipes
ENSDARG00000033537	p4ha1a	99	72.948	ENSORLG00020015227	-	97	72.575	Oryzias_latipes_hni
ENSDARG00000033537	p4ha1a	99	72.948	ENSORLG00015012970	-	97	72.575	Oryzias_latipes_hsok
ENSDARG00000033537	p4ha1a	98	73.171	ENSOMEG00000019702	-	99	72.897	Oryzias_melastigma
ENSDARG00000033537	p4ha1a	99	78.957	ENSPKIG00000002519	p4ha1a	96	80.268	Paramormyrops_kingsleyae
ENSDARG00000033537	p4ha1a	99	74.019	ENSPREG00000016136	p4ha1a	99	74.019	Poecilia_reticulata
ENSDARG00000033537	p4ha1a	99	85.424	ENSPNAG00000025732	p4ha1a	100	85.055	Pygocentrus_nattereri
ENSDARG00000033537	p4ha1a	96	81.382	ENSSFOG00015009731	p4ha1	96	81.298	Scleropages_formosus
ENSDARG00000033537	p4ha1a	98	70.301	ENSTNIG00000003570	-	97	71.017	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004656	procollagen-proline 4-dioxygenase activity	21873635.	IBA	Function
GO:0004656	procollagen-proline 4-dioxygenase activity	-	IEA	Function
GO:0005506	iron ion binding	-	IEA	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	-	IEA	Function
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	-	IEA	Function
GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	21873635.	IBA	Process
GO:0031418	L-ascorbic acid binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0055114	oxidation-reduction process	-	IEA	Process