EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000033901 (Gene tree)
Gene ID: 100002680
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: musashi RNA-binding protein 2a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 283791 bases
Position: chr10:37500234-37784024
Accession: ZDB-GENE-030826-25
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000090247	RRM_1	PF00076.22	2.3e-32	1	2
ENSDARP00000090247	RRM_1	PF00076.22	2.3e-32	2	2
ENSDARP00000123512	RRM_1	PF00076.22	2.3e-32	1	2
ENSDARP00000123512	RRM_1	PF00076.22	2.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000132096	-	2259	XM_009305537	ENSDARP00000123512	388 (aa)	XP_009303812	Q7ZW10
ENSDART00000135642	-	521	-	-	- (aa)	-	-
ENSDART00000141183	-	493	-	-	- (aa)	-	-
ENSDART00000134104	-	406	-	-	- (aa)	-	-
ENSDART00000099473	-	1169	-	ENSDARP00000090247	388 (aa)	-	Q7ZW10

Gene Model

Click here to download ENSDARG00000033901's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000033901's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000033901	msi2a	100	84.804	ENSDARG00000032614	msi2b	100	96.354
ENSDARG00000033901	msi2a	65	37.589	ENSDARG00000070846	dazap1	94	41.379
ENSDARG00000033901	msi2a	95	60.340	ENSDARG00000010710	msi1	99	59.773
ENSDARG00000033901	msi2a	81	52.326	ENSDARG00000102015	CABZ01037298.1	98	52.326
ENSDARG00000033901	msi2a	52	41.509	ENSDARG00000059246	hnrnpd	58	45.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000033901	msi2a	100	77.320	ENSG00000153944	MSI2	93	92.857	Homo_sapiens
ENSDARG00000033901	msi2a	100	84.275	ENSAPOG00000001658	msi2a	100	93.827	Acanthochromis_polyacanthus
ENSDARG00000033901	msi2a	95	79.564	ENSAMEG00000002697	MSI2	99	79.564	Ailuropoda_melanoleuca
ENSDARG00000033901	msi2a	100	84.949	ENSACIG00000009475	msi2a	100	84.949	Amphilophus_citrinellus
ENSDARG00000033901	msi2a	100	74.242	ENSAPEG00000007706	msi2a	100	81.443	Amphiprion_percula
ENSDARG00000033901	msi2a	95	75.444	ENSATEG00000003301	-	100	75.444	Anabas_testudineus
ENSDARG00000033901	msi2a	100	84.275	ENSATEG00000010498	msi2a	100	93.827	Anabas_testudineus
ENSDARG00000033901	msi2a	95	80.791	ENSACAG00000005452	MSI2	88	80.791	Anolis_carolinensis
ENSDARG00000033901	msi2a	100	77.320	ENSANAG00000037827	MSI2	91	93.274	Aotus_nancymaae
ENSDARG00000033901	msi2a	100	84.275	ENSACLG00000007752	msi2a	100	93.846	Astatotilapia_calliptera
ENSDARG00000033901	msi2a	100	90.464	ENSAMXG00000010474	msi2b	100	90.464	Astyanax_mexicanus
ENSDARG00000033901	msi2a	100	90.488	ENSAMXG00000032796	msi2a	100	90.746	Astyanax_mexicanus
ENSDARG00000033901	msi2a	95	76.839	ENSBTAG00000004406	MSI2	82	94.144	Bos_taurus
ENSDARG00000033901	msi2a	60	60.643	WBGene00003423	msi-1	76	60.643	Caenorhabditis_elegans
ENSDARG00000033901	msi2a	100	77.320	ENSCJAG00000013998	MSI2	91	93.274	Callithrix_jacchus
ENSDARG00000033901	msi2a	95	78.632	ENSCAFG00020025620	MSI2	72	91.244	Canis_lupus_dingo
ENSDARG00000033901	msi2a	100	76.546	ENSCHIG00000016580	MSI2	100	76.289	Capra_hircus
ENSDARG00000033901	msi2a	95	71.637	ENSCPOG00000034042	MSI2	99	71.637	Cavia_porcellus
ENSDARG00000033901	msi2a	100	77.320	ENSCCAG00000033927	MSI2	91	93.274	Cebus_capucinus
ENSDARG00000033901	msi2a	97	77.454	ENSCATG00000040879	MSI2	91	93.274	Cercocebus_atys
ENSDARG00000033901	msi2a	100	79.639	ENSCLAG00000014325	MSI2	100	79.639	Chinchilla_lanigera
ENSDARG00000033901	msi2a	100	77.320	ENSCSAG00000005633	MSI2	100	77.062	Chlorocebus_sabaeus
ENSDARG00000033901	msi2a	64	88.235	ENSCHOG00000008660	MSI2	83	88.235	Choloepus_hoffmanni
ENSDARG00000033901	msi2a	95	83.478	ENSCPBG00000009942	MSI2	96	83.478	Chrysemys_picta_bellii
ENSDARG00000033901	msi2a	52	65.438	ENSCSAVG00000010397	-	67	66.038	Ciona_savignyi
ENSDARG00000033901	msi2a	95	79.508	ENSCANG00000036414	MSI2	91	93.274	Colobus_angolensis_palliatus
ENSDARG00000033901	msi2a	100	76.864	ENSCGRG00001013330	Msi2	100	76.546	Cricetulus_griseus_chok1gshd
ENSDARG00000033901	msi2a	95	79.348	ENSCGRG00000003141	Msi2	100	79.348	Cricetulus_griseus_crigri
ENSDARG00000033901	msi2a	81	47.638	ENSCSEG00000013557	msi2a	83	47.638	Cynoglossus_semilaevis
ENSDARG00000033901	msi2a	100	62.468	ENSCSEG00000003266	-	100	64.948	Cynoglossus_semilaevis
ENSDARG00000033901	msi2a	100	89.691	ENSCVAG00000017075	msi2a	100	93.827	Cyprinodon_variegatus
ENSDARG00000033901	msi2a	95	75.862	ENSDNOG00000014501	MSI2	100	75.575	Dasypus_novemcinctus
ENSDARG00000033901	msi2a	59	88.235	ENSDORG00000005394	Msi2	86	61.089	Dipodomys_ordii
ENSDARG00000033901	msi2a	96	50.639	FBgn0260943	Rbp6	88	65.753	Drosophila_melanogaster
ENSDARG00000033901	msi2a	57	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSDARG00000033901	msi2a	90	58.000	ENSEBUG00000006732	msi2a	87	58.000	Eptatretus_burgeri
ENSDARG00000033901	msi2a	95	76.839	ENSEASG00005002965	MSI2	97	78.400	Equus_asinus_asinus
ENSDARG00000033901	msi2a	100	76.289	ENSECAG00000011435	MSI2	100	77.778	Equus_caballus
ENSDARG00000033901	msi2a	67	86.047	ENSEEUG00000007810	MSI2	100	58.147	Erinaceus_europaeus
ENSDARG00000033901	msi2a	97	90.426	ENSELUG00000011747	msi2a	99	88.281	Esox_lucius
ENSDARG00000033901	msi2a	100	88.861	ENSELUG00000001361	msi2b	100	88.861	Esox_lucius
ENSDARG00000033901	msi2a	100	77.320	ENSFCAG00000041686	MSI2	91	93.274	Felis_catus
ENSDARG00000033901	msi2a	95	79.564	ENSFDAG00000016118	MSI2	100	79.564	Fukomys_damarensis
ENSDARG00000033901	msi2a	100	84.275	ENSFHEG00000000084	msi2a	100	89.706	Fundulus_heteroclitus
ENSDARG00000033901	msi2a	100	79.124	ENSGALG00000005567	MSI2	100	79.124	Gallus_gallus
ENSDARG00000033901	msi2a	82	88.889	ENSGAFG00000006974	msi2a	99	88.889	Gambusia_affinis
ENSDARG00000033901	msi2a	100	81.373	ENSGAGG00000016542	MSI2	100	81.418	Gopherus_agassizii
ENSDARG00000033901	msi2a	95	79.508	ENSGGOG00000013182	MSI2	91	93.274	Gorilla_gorilla
ENSDARG00000033901	msi2a	100	84.275	ENSHBUG00000020800	msi2a	100	93.846	Haplochromis_burtoni
ENSDARG00000033901	msi2a	100	71.907	ENSHGLG00000012444	MSI2	100	71.907	Heterocephalus_glaber_female
ENSDARG00000033901	msi2a	79	72.289	ENSHGLG00100003744	MSI2	100	71.486	Heterocephalus_glaber_male
ENSDARG00000033901	msi2a	100	83.784	ENSHCOG00000000266	msi2a	100	85.012	Hippocampus_comes
ENSDARG00000033901	msi2a	97	69.727	ENSHCOG00000017241	-	98	68.905	Hippocampus_comes
ENSDARG00000033901	msi2a	100	89.433	ENSIPUG00000003732	msi2b	100	89.433	Ictalurus_punctatus
ENSDARG00000033901	msi2a	100	84.236	ENSIPUG00000021097	msi2a	100	93.004	Ictalurus_punctatus
ENSDARG00000033901	msi2a	95	71.637	ENSSTOG00000007884	MSI2	99	71.637	Ictidomys_tridecemlineatus
ENSDARG00000033901	msi2a	79	65.863	ENSJJAG00000006292	-	100	65.863	Jaculus_jaculus
ENSDARG00000033901	msi2a	100	89.433	ENSKMAG00000009494	msi2a	100	89.433	Kryptolebias_marmoratus
ENSDARG00000033901	msi2a	100	84.275	ENSLBEG00000007061	msi2a	100	85.749	Labrus_bergylta
ENSDARG00000033901	msi2a	95	77.193	ENSLBEG00000026223	-	100	77.193	Labrus_bergylta
ENSDARG00000033901	msi2a	100	90.464	ENSLOCG00000004675	msi2b	100	90.464	Lepisosteus_oculatus
ENSDARG00000033901	msi2a	95	79.508	ENSMFAG00000003775	MSI2	91	93.274	Macaca_fascicularis
ENSDARG00000033901	msi2a	95	79.508	ENSMMUG00000002069	MSI2	91	93.274	Macaca_mulatta
ENSDARG00000033901	msi2a	100	77.320	ENSMNEG00000045275	MSI2	91	93.274	Macaca_nemestrina
ENSDARG00000033901	msi2a	95	79.508	ENSMLEG00000033888	MSI2	91	93.274	Mandrillus_leucophaeus
ENSDARG00000033901	msi2a	100	80.435	ENSMAMG00000002488	-	99	92.053	Mastacembelus_armatus
ENSDARG00000033901	msi2a	100	84.069	ENSMAMG00000010503	msi2a	100	93.827	Mastacembelus_armatus
ENSDARG00000033901	msi2a	100	84.275	ENSMZEG00005007676	msi2a	100	93.939	Maylandia_zebra
ENSDARG00000033901	msi2a	100	79.177	ENSMAUG00000003862	Msi2	100	79.177	Mesocricetus_auratus
ENSDARG00000033901	msi2a	81	81.159	ENSMICG00000032913	-	100	63.402	Microcebus_murinus
ENSDARG00000033901	msi2a	100	77.320	ENSMICG00000013598	-	91	93.274	Microcebus_murinus
ENSDARG00000033901	msi2a	100	79.381	ENSMOCG00000005820	Msi2	100	79.381	Microtus_ochrogaster
ENSDARG00000033901	msi2a	96	76.203	ENSMMOG00000008348	msi2a	89	88.608	Mola_mola
ENSDARG00000033901	msi2a	79	72.289	ENSMODG00000014790	MSI2	100	72.289	Monodelphis_domestica
ENSDARG00000033901	msi2a	100	92.157	ENSMALG00000000071	msi2a	100	93.846	Monopterus_albus
ENSDARG00000033901	msi2a	100	79.381	MGP_CAROLIEiJ_G0016948	Msi2	100	94.690	Mus_caroli
ENSDARG00000033901	msi2a	100	79.381	ENSMUSG00000069769	Msi2	100	94.690	Mus_musculus
ENSDARG00000033901	msi2a	100	79.381	MGP_PahariEiJ_G0018079	Msi2	100	94.690	Mus_pahari
ENSDARG00000033901	msi2a	100	79.381	MGP_SPRETEiJ_G0017795	Msi2	100	94.690	Mus_spretus
ENSDARG00000033901	msi2a	95	77.112	ENSMPUG00000015377	MSI2	97	76.839	Mustela_putorius_furo
ENSDARG00000033901	msi2a	95	76.839	ENSMLUG00000007865	MSI2	97	76.567	Myotis_lucifugus
ENSDARG00000033901	msi2a	100	79.381	ENSNGAG00000017807	Msi2	100	79.381	Nannospalax_galili
ENSDARG00000033901	msi2a	100	89.948	ENSNBRG00000014596	msi2a	100	91.176	Neolamprologus_brichardi
ENSDARG00000033901	msi2a	95	78.754	ENSNLEG00000008059	MSI2	95	92.823	Nomascus_leucogenys
ENSDARG00000033901	msi2a	57	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSDARG00000033901	msi2a	100	79.639	ENSODEG00000011974	MSI2	100	79.639	Octodon_degus
ENSDARG00000033901	msi2a	98	72.340	ENSOANG00000005667	MSI2	99	74.941	Ornithorhynchus_anatinus
ENSDARG00000033901	msi2a	95	77.112	ENSOCUG00000010440	MSI2	97	76.839	Oryctolagus_cuniculus
ENSDARG00000033901	msi2a	100	90.206	ENSORLG00000009671	msi2a	100	90.206	Oryzias_latipes
ENSDARG00000033901	msi2a	100	84.521	ENSORLG00020021556	msi2a	100	93.846	Oryzias_latipes_hni
ENSDARG00000033901	msi2a	100	90.206	ENSORLG00015004592	msi2a	100	90.206	Oryzias_latipes_hsok
ENSDARG00000033901	msi2a	100	90.206	ENSOMEG00000000146	msi2a	100	93.846	Oryzias_melastigma
ENSDARG00000033901	msi2a	95	73.025	ENSOGAG00000005621	MSI2	99	73.025	Otolemur_garnettii
ENSDARG00000033901	msi2a	95	79.508	ENSPPAG00000037697	MSI2	91	93.274	Pan_paniscus
ENSDARG00000033901	msi2a	95	77.112	ENSPPRG00000001848	MSI2	91	93.274	Panthera_pardus
ENSDARG00000033901	msi2a	95	78.754	ENSPTIG00000021678	MSI2	83	92.823	Panthera_tigris_altaica
ENSDARG00000033901	msi2a	61	75.424	ENSPTIG00000021873	-	89	75.424	Panthera_tigris_altaica
ENSDARG00000033901	msi2a	95	79.508	ENSPTRG00000009437	MSI2	91	93.274	Pan_troglodytes
ENSDARG00000033901	msi2a	100	77.320	ENSPANG00000022319	MSI2	91	93.274	Papio_anubis
ENSDARG00000033901	msi2a	100	80.670	ENSPKIG00000007038	-	96	91.358	Paramormyrops_kingsleyae
ENSDARG00000033901	msi2a	100	84.975	ENSPSIG00000008618	MSI2	100	84.975	Pelodiscus_sinensis
ENSDARG00000033901	msi2a	100	73.711	ENSPMGG00000005888	msi2a	100	73.711	Periophthalmus_magnuspinnatus
ENSDARG00000033901	msi2a	97	81.067	ENSPCIG00000006063	MSI2	100	78.283	Phascolarctos_cinereus
ENSDARG00000033901	msi2a	100	84.029	ENSPREG00000000881	msi2a	100	85.504	Poecilia_reticulata
ENSDARG00000033901	msi2a	95	70.470	ENSPPYG00000008244	-	100	70.470	Pongo_abelii
ENSDARG00000033901	msi2a	77	50.000	ENSPCAG00000010552	MSI2	100	47.987	Procavia_capensis
ENSDARG00000033901	msi2a	68	95.604	ENSPVAG00000017053	MSI2	100	69.688	Pteropus_vampyrus
ENSDARG00000033901	msi2a	100	84.275	ENSPNYG00000018393	msi2a	100	93.939	Pundamilia_nyererei
ENSDARG00000033901	msi2a	100	90.231	ENSPNAG00000000844	msi2b	100	90.231	Pygocentrus_nattereri
ENSDARG00000033901	msi2a	100	91.003	ENSPNAG00000014957	msi2a	100	91.003	Pygocentrus_nattereri
ENSDARG00000033901	msi2a	95	75.444	ENSRNOG00000025338	Msi2	100	75.148	Rattus_norvegicus
ENSDARG00000033901	msi2a	95	79.508	ENSSBOG00000026425	MSI2	91	93.274	Saimiri_boliviensis_boliviensis
ENSDARG00000033901	msi2a	95	79.781	ENSSHAG00000008672	MSI2	100	79.781	Sarcophilus_harrisii
ENSDARG00000033901	msi2a	100	67.647	ENSSFOG00015012168	msi2b	100	67.647	Scleropages_formosus
ENSDARG00000033901	msi2a	95	71.662	ENSSFOG00015021687	-	97	91.441	Scleropages_formosus
ENSDARG00000033901	msi2a	100	84.521	ENSSMAG00000018484	msi2a	100	93.846	Scophthalmus_maximus
ENSDARG00000033901	msi2a	100	71.392	ENSSDUG00000021968	-	99	90.066	Seriola_dumerili
ENSDARG00000033901	msi2a	100	84.275	ENSSDUG00000014507	msi2a	100	93.827	Seriola_dumerili
ENSDARG00000033901	msi2a	100	84.275	ENSSLDG00000017172	msi2a	95	93.827	Seriola_lalandi_dorsalis
ENSDARG00000033901	msi2a	100	84.275	ENSSPAG00000017793	msi2a	95	93.827	Stegastes_partitus
ENSDARG00000033901	msi2a	100	77.320	ENSSSCG00000038505	MSI2	96	93.004	Sus_scrofa
ENSDARG00000033901	msi2a	79	72.289	ENSTGUG00000008452	MSI2	100	72.289	Taeniopygia_guttata
ENSDARG00000033901	msi2a	96	83.715	ENSTRUG00000021248	msi2a	95	84.987	Takifugu_rubripes
ENSDARG00000033901	msi2a	62	77.273	ENSTBEG00000001241	MSI2	73	77.273	Tupaia_belangeri
ENSDARG00000033901	msi2a	73	94.737	ENSTTRG00000002189	MSI2	91	94.737	Tursiops_truncatus
ENSDARG00000033901	msi2a	95	77.112	ENSUAMG00000000700	MSI2	96	94.144	Ursus_americanus
ENSDARG00000033901	msi2a	77	88.462	ENSUMAG00000000505	MSI2	95	93.782	Ursus_maritimus
ENSDARG00000033901	msi2a	100	79.639	ENSVVUG00000011783	MSI2	97	91.244	Vulpes_vulpes
ENSDARG00000033901	msi2a	100	87.887	ENSXCOG00000006113	msi2a	100	87.887	Xiphophorus_couchianus
ENSDARG00000033901	msi2a	100	84.275	ENSXMAG00000000608	msi2a	100	93.827	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component