EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000034178 (Gene tree)
Gene ID: 432372
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 77534 bases
Position: chr19:11897631-11975164
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000135813	PARP	PF00644.20	3.8e-25	1	1
ENSDARP00000023736	CPSF_A	PF03178.15	2.8e-92	1	1
ENSDARP00000130523	CPSF_A	PF03178.15	2.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000168308	-	4825	-	ENSDARP00000135813	1125 (aa)	-	A0A0R4IJ92
ENSDART00000024861	-	4746	XM_005159584	ENSDARP00000023736	1448 (aa)	XP_005159641	F6NXE7
ENSDART00000163478	-	4356	-	ENSDARP00000130523	1451 (aa)	-	A0A0R4IC37
ENSDART00000167299	-	1203	-	ENSDARP00000134781	400 (aa)	-	A0A0R4IH63

Gene Model

Click here to download ENSDARG00000034178's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000034178's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000034178	cpsf1	99	100.000	ENSDARG00000087145	si:ch1073-296d18.1	95	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000034178	cpsf1	100	79.545	ENSG00000071894	CPSF1	100	79.477	Homo_sapiens
ENSDARG00000034178	cpsf1	100	87.095	ENSAPOG00000019621	cpsf1	100	86.959	Acanthochromis_polyacanthus
ENSDARG00000034178	cpsf1	97	78.125	ENSAMEG00000005557	CPSF1	99	78.607	Ailuropoda_melanoleuca
ENSDARG00000034178	cpsf1	100	86.079	ENSACIG00000006112	cpsf1	100	86.285	Amphilophus_citrinellus
ENSDARG00000034178	cpsf1	100	86.942	ENSAOCG00000007120	cpsf1	100	86.942	Amphiprion_ocellaris
ENSDARG00000034178	cpsf1	100	87.904	ENSAPEG00000005755	cpsf1	100	87.835	Amphiprion_percula
ENSDARG00000034178	cpsf1	100	86.486	ENSATEG00000011097	cpsf1	100	86.689	Anabas_testudineus
ENSDARG00000034178	cpsf1	93	76.036	ENSACAG00000009655	CPSF1	100	75.962	Anolis_carolinensis
ENSDARG00000034178	cpsf1	100	79.752	ENSANAG00000036514	CPSF1	100	79.683	Aotus_nancymaae
ENSDARG00000034178	cpsf1	99	86.357	ENSACLG00000012231	cpsf1	99	86.428	Astatotilapia_calliptera
ENSDARG00000034178	cpsf1	100	83.713	ENSAMXG00000008485	cpsf1	100	83.506	Astyanax_mexicanus
ENSDARG00000034178	cpsf1	100	78.161	ENSBTAG00000008355	CPSF1	100	78.898	Bos_taurus
ENSDARG00000034178	cpsf1	100	32.507	WBGene00022301	cpsf-1	99	41.243	Caenorhabditis_elegans
ENSDARG00000034178	cpsf1	100	79.752	ENSCJAG00000021421	CPSF1	100	79.683	Callithrix_jacchus
ENSDARG00000034178	cpsf1	96	79.829	ENSCAFG00000001600	CPSF1	100	79.230	Canis_familiaris
ENSDARG00000034178	cpsf1	100	79.367	ENSCAFG00020020821	CPSF1	100	79.298	Canis_lupus_dingo
ENSDARG00000034178	cpsf1	100	75.620	ENSCHIG00000015833	CPSF1	100	75.496	Capra_hircus
ENSDARG00000034178	cpsf1	100	79.821	ENSTSYG00000028560	CPSF1	100	79.752	Carlito_syrichta
ENSDARG00000034178	cpsf1	97	78.809	ENSCAPG00000014921	CPSF1	98	79.513	Cavia_aperea
ENSDARG00000034178	cpsf1	100	78.611	ENSCPOG00000011448	CPSF1	100	78.542	Cavia_porcellus
ENSDARG00000034178	cpsf1	100	79.821	ENSCCAG00000037658	CPSF1	100	79.752	Cebus_capucinus
ENSDARG00000034178	cpsf1	100	79.821	ENSCATG00000037234	CPSF1	99	81.493	Cercocebus_atys
ENSDARG00000034178	cpsf1	100	79.904	ENSCLAG00000012166	CPSF1	100	79.835	Chinchilla_lanigera
ENSDARG00000034178	cpsf1	100	79.959	ENSCSAG00000008502	CPSF1	100	79.890	Chlorocebus_sabaeus
ENSDARG00000034178	cpsf1	99	80.932	ENSCPBG00000018910	CPSF1	96	80.724	Chrysemys_picta_bellii
ENSDARG00000034178	cpsf1	96	48.712	ENSCING00000000514	-	100	48.641	Ciona_intestinalis
ENSDARG00000034178	cpsf1	99	49.214	ENSCSAVG00000002293	-	98	52.804	Ciona_savignyi
ENSDARG00000034178	cpsf1	98	76.972	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSDARG00000034178	cpsf1	100	79.491	ENSCGRG00001016344	Cpsf1	100	79.422	Cricetulus_griseus_chok1gshd
ENSDARG00000034178	cpsf1	100	77.839	ENSCGRG00000003118	Cpsf1	100	77.770	Cricetulus_griseus_crigri
ENSDARG00000034178	cpsf1	100	84.679	ENSCSEG00000013464	cpsf1	100	84.679	Cynoglossus_semilaevis
ENSDARG00000034178	cpsf1	85	83.333	ENSCVAG00000014059	cpsf1	100	77.778	Cyprinodon_variegatus
ENSDARG00000034178	cpsf1	57	80.870	ENSDNOG00000043654	CPSF1	94	80.870	Dasypus_novemcinctus
ENSDARG00000034178	cpsf1	97	79.686	ENSDORG00000006278	Cpsf1	99	79.799	Dipodomys_ordii
ENSDARG00000034178	cpsf1	100	44.214	FBgn0024698	Cpsf160	100	44.035	Drosophila_melanogaster
ENSDARG00000034178	cpsf1	80	84.564	ENSETEG00000006022	CPSF1	83	84.564	Echinops_telfairi
ENSDARG00000034178	cpsf1	100	79.711	ENSEASG00005010774	CPSF1	100	79.574	Equus_asinus_asinus
ENSDARG00000034178	cpsf1	100	79.574	ENSECAG00000022209	CPSF1	100	79.436	Equus_caballus
ENSDARG00000034178	cpsf1	100	79.313	ENSEEUG00000000471	CPSF1	100	79.244	Erinaceus_europaeus
ENSDARG00000034178	cpsf1	100	86.739	ENSELUG00000012271	cpsf1	100	86.929	Esox_lucius
ENSDARG00000034178	cpsf1	100	79.972	ENSFDAG00000016060	CPSF1	100	79.904	Fukomys_damarensis
ENSDARG00000034178	cpsf1	100	84.684	ENSFHEG00000016801	cpsf1	100	84.753	Fundulus_heteroclitus
ENSDARG00000034178	cpsf1	100	85.911	ENSGMOG00000000796	cpsf1	100	85.842	Gadus_morhua
ENSDARG00000034178	cpsf1	96	83.057	ENSGAFG00000018890	cpsf1	100	82.870	Gambusia_affinis
ENSDARG00000034178	cpsf1	100	87.157	ENSGACG00000008703	cpsf1	100	87.019	Gasterosteus_aculeatus
ENSDARG00000034178	cpsf1	100	77.816	ENSGAGG00000004276	CPSF1	98	81.667	Gopherus_agassizii
ENSDARG00000034178	cpsf1	100	79.600	ENSGGOG00000016185	CPSF1	100	79.531	Gorilla_gorilla
ENSDARG00000034178	cpsf1	100	87.388	ENSHBUG00000018900	cpsf1	100	87.388	Haplochromis_burtoni
ENSDARG00000034178	cpsf1	100	80.041	ENSHGLG00000016139	CPSF1	100	79.972	Heterocephalus_glaber_female
ENSDARG00000034178	cpsf1	100	79.972	ENSHGLG00100009750	CPSF1	100	79.904	Heterocephalus_glaber_male
ENSDARG00000034178	cpsf1	100	84.125	ENSHCOG00000018509	cpsf1	100	84.057	Hippocampus_comes
ENSDARG00000034178	cpsf1	100	86.067	ENSIPUG00000011259	cpsf1	100	85.930	Ictalurus_punctatus
ENSDARG00000034178	cpsf1	97	79.362	ENSSTOG00000009957	CPSF1	98	79.872	Ictidomys_tridecemlineatus
ENSDARG00000034178	cpsf1	100	79.738	ENSJJAG00000023002	Cpsf1	100	79.669	Jaculus_jaculus
ENSDARG00000034178	cpsf1	91	90.909	ENSKMAG00000001940	cpsf1	99	90.909	Kryptolebias_marmoratus
ENSDARG00000034178	cpsf1	100	85.579	ENSLBEG00000003601	cpsf1	100	85.917	Labrus_bergylta
ENSDARG00000034178	cpsf1	92	75.168	ENSLACG00000000233	CPSF1	100	67.531	Latimeria_chalumnae
ENSDARG00000034178	cpsf1	100	83.104	ENSLOCG00000008484	cpsf1	100	83.471	Lepisosteus_oculatus
ENSDARG00000034178	cpsf1	97	79.602	ENSLAFG00000022601	CPSF1	99	79.957	Loxodonta_africana
ENSDARG00000034178	cpsf1	100	79.890	ENSMFAG00000037013	CPSF1	99	81.493	Macaca_fascicularis
ENSDARG00000034178	cpsf1	100	79.890	ENSMMUG00000007380	CPSF1	100	79.821	Macaca_mulatta
ENSDARG00000034178	cpsf1	97	80.128	ENSMNEG00000043564	CPSF1	99	80.430	Macaca_nemestrina
ENSDARG00000034178	cpsf1	100	79.890	ENSMLEG00000043010	CPSF1	99	81.493	Mandrillus_leucophaeus
ENSDARG00000034178	cpsf1	100	86.486	ENSMAMG00000003803	cpsf1	100	86.554	Mastacembelus_armatus
ENSDARG00000034178	cpsf1	100	84.425	ENSMZEG00005001168	cpsf1	100	84.425	Maylandia_zebra
ENSDARG00000034178	cpsf1	100	79.669	ENSMAUG00000003601	Cpsf1	100	79.600	Mesocricetus_auratus
ENSDARG00000034178	cpsf1	100	79.531	ENSMICG00000015767	CPSF1	100	79.462	Microcebus_murinus
ENSDARG00000034178	cpsf1	100	79.462	ENSMOCG00000022758	Cpsf1	100	79.256	Microtus_ochrogaster
ENSDARG00000034178	cpsf1	100	86.777	ENSMMOG00000021245	cpsf1	100	86.639	Mola_mola
ENSDARG00000034178	cpsf1	100	80.082	ENSMODG00000010755	CPSF1	100	80.165	Monodelphis_domestica
ENSDARG00000034178	cpsf1	100	86.536	ENSMALG00000020545	cpsf1	100	86.536	Monopterus_albus
ENSDARG00000034178	cpsf1	100	79.394	MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.325	Mus_caroli
ENSDARG00000034178	cpsf1	100	79.325	ENSMUSG00000034022	Cpsf1	100	79.256	Mus_musculus
ENSDARG00000034178	cpsf1	100	79.394	MGP_PahariEiJ_G0019946	Cpsf1	100	79.325	Mus_pahari
ENSDARG00000034178	cpsf1	100	79.394	MGP_SPRETEiJ_G0020839	Cpsf1	100	79.325	Mus_spretus
ENSDARG00000034178	cpsf1	94	79.617	ENSMPUG00000006419	CPSF1	93	79.544	Mustela_putorius_furo
ENSDARG00000034178	cpsf1	100	79.600	ENSNGAG00000022460	Cpsf1	100	79.394	Nannospalax_galili
ENSDARG00000034178	cpsf1	100	81.875	ENSNBRG00000000813	cpsf1	100	81.875	Neolamprologus_brichardi
ENSDARG00000034178	cpsf1	86	68.919	ENSNLEG00000010633	-	100	79.167	Nomascus_leucogenys
ENSDARG00000034178	cpsf1	82	86.047	ENSMEUG00000014922	CPSF1	84	86.047	Notamacropus_eugenii
ENSDARG00000034178	cpsf1	60	88.889	ENSOPRG00000004693	-	70	88.889	Ochotona_princeps
ENSDARG00000034178	cpsf1	100	79.972	ENSODEG00000013995	CPSF1	100	79.904	Octodon_degus
ENSDARG00000034178	cpsf1	100	87.741	ENSONIG00000007676	cpsf1	100	87.741	Oreochromis_niloticus
ENSDARG00000034178	cpsf1	58	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSDARG00000034178	cpsf1	100	85.977	ENSORLG00000013544	cpsf1	100	85.977	Oryzias_latipes
ENSDARG00000034178	cpsf1	100	86.045	ENSORLG00020021693	cpsf1	100	86.045	Oryzias_latipes_hni
ENSDARG00000034178	cpsf1	100	85.977	ENSORLG00015009979	cpsf1	100	85.977	Oryzias_latipes_hsok
ENSDARG00000034178	cpsf1	100	85.326	ENSOMEG00000011849	cpsf1	100	85.258	Oryzias_melastigma
ENSDARG00000034178	cpsf1	100	79.821	ENSOGAG00000000315	CPSF1	100	79.752	Otolemur_garnettii
ENSDARG00000034178	cpsf1	100	79.752	ENSPPAG00000019280	CPSF1	100	80.090	Pan_paniscus
ENSDARG00000034178	cpsf1	100	79.752	ENSPTRG00000049288	-	100	80.090	Pan_troglodytes
ENSDARG00000034178	cpsf1	100	78.402	ENSPTRG00000051253	-	100	80.090	Pan_troglodytes
ENSDARG00000034178	cpsf1	97	80.128	ENSPANG00000015005	CPSF1	99	80.430	Papio_anubis
ENSDARG00000034178	cpsf1	100	88.094	ENSPKIG00000002582	cpsf1	100	87.818	Paramormyrops_kingsleyae
ENSDARG00000034178	cpsf1	100	80.151	ENSPCIG00000009035	CPSF1	100	80.233	Phascolarctos_cinereus
ENSDARG00000034178	cpsf1	100	84.089	ENSPFOG00000012870	cpsf1	100	84.563	Poecilia_formosa
ENSDARG00000034178	cpsf1	100	83.829	ENSPREG00000016307	cpsf1	100	84.157	Poecilia_reticulata
ENSDARG00000034178	cpsf1	100	72.865	ENSPPYG00000018973	CPSF1	100	72.796	Pongo_abelii
ENSDARG00000034178	cpsf1	91	84.659	ENSPCAG00000011541	CPSF1	93	84.659	Procavia_capensis
ENSDARG00000034178	cpsf1	100	76.256	ENSPCOG00000020001	CPSF1	100	78.704	Propithecus_coquereli
ENSDARG00000034178	cpsf1	91	88.000	ENSPVAG00000006761	CPSF1	91	88.000	Pteropus_vampyrus
ENSDARG00000034178	cpsf1	100	86.419	ENSPNYG00000004906	cpsf1	100	86.342	Pundamilia_nyererei
ENSDARG00000034178	cpsf1	100	85.320	ENSPNAG00000024395	cpsf1	100	85.183	Pygocentrus_nattereri
ENSDARG00000034178	cpsf1	100	79.586	ENSRNOG00000030705	Cpsf1	100	79.517	Rattus_norvegicus
ENSDARG00000034178	cpsf1	100	79.890	ENSRBIG00000044907	CPSF1	99	81.250	Rhinopithecus_bieti
ENSDARG00000034178	cpsf1	100	79.959	ENSRROG00000044861	CPSF1	99	81.250	Rhinopithecus_roxellana
ENSDARG00000034178	cpsf1	97	80.100	ENSSBOG00000027177	CPSF1	99	80.287	Saimiri_boliviensis_boliviensis
ENSDARG00000034178	cpsf1	100	80.082	ENSSHAG00000006500	CPSF1	100	80.014	Sarcophilus_harrisii
ENSDARG00000034178	cpsf1	100	85.557	ENSSFOG00015004606	cpsf1	100	88.517	Scleropages_formosus
ENSDARG00000034178	cpsf1	100	85.724	ENSSMAG00000020547	cpsf1	100	85.995	Scophthalmus_maximus
ENSDARG00000034178	cpsf1	100	88.215	ENSSDUG00000001100	cpsf1	100	87.939	Seriola_dumerili
ENSDARG00000034178	cpsf1	100	88.008	ENSSLDG00000003619	cpsf1	100	87.939	Seriola_lalandi_dorsalis
ENSDARG00000034178	cpsf1	89	76.701	ENSSARG00000003643	CPSF1	92	76.621	Sorex_araneus
ENSDARG00000034178	cpsf1	96	81.935	ENSSPUG00000014396	CPSF1	100	81.792	Sphenodon_punctatus
ENSDARG00000034178	cpsf1	100	86.815	ENSSPAG00000005349	cpsf1	100	86.883	Stegastes_partitus
ENSDARG00000034178	cpsf1	100	78.611	ENSSSCG00000005906	CPSF1	100	78.542	Sus_scrofa
ENSDARG00000034178	cpsf1	96	85.484	ENSTRUG00000013134	cpsf1	99	85.203	Takifugu_rubripes
ENSDARG00000034178	cpsf1	100	86.233	ENSTNIG00000014027	cpsf1	100	86.164	Tetraodon_nigroviridis
ENSDARG00000034178	cpsf1	77	74.276	ENSTBEG00000001756	CPSF1	91	73.935	Tupaia_belangeri
ENSDARG00000034178	cpsf1	89	83.304	ENSTTRG00000001937	CPSF1	89	83.304	Tursiops_truncatus
ENSDARG00000034178	cpsf1	97	79.688	ENSUAMG00000006476	CPSF1	97	80.187	Ursus_americanus
ENSDARG00000034178	cpsf1	100	84.690	ENSXCOG00000003608	cpsf1	100	84.897	Xiphophorus_couchianus
ENSDARG00000034178	cpsf1	100	84.425	ENSXMAG00000005798	cpsf1	100	84.631	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003950	NAD+ ADP-ribosyltransferase activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	21330472.	IMP	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016757	transferase activity, transferring glycosyl groups	-	IEA	Function
GO:0060216	definitive hemopoiesis	21330472.	IMP	Process