EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000034215 (Gene tree)
Gene ID: 406315
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: RAB42%2C member RAS oncogene family a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3765 bases
Position: chr19:16032383-16036147
Accession: ZDB-GENE-040426-1983
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000046529	MMR_HSR1	PF01926.23	5.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000046530	-	1090	-	ENSDARP00000046529	213 (aa)	-	Q6P977

Gene Model

Click here to download ENSDARG00000034215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000034215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000034215	rab42a	75	32.919	ENSDARG00000010844	kras	90	32.184
ENSDARG00000034215	rab42a	59	30.534	ENSDARG00000063223	arl14	61	30.534
ENSDARG00000034215	rab42a	85	33.871	ENSDARG00000087243	zgc:100918	89	33.871
ENSDARG00000034215	rab42a	77	40.000	ENSDARG00000055291	rab18a	80	40.000
ENSDARG00000034215	rab42a	71	34.437	ENSDARG00000005651	hrasb	99	31.034
ENSDARG00000034215	rab42a	77	32.927	ENSDARG00000098497	hrasa	97	30.097
ENSDARG00000034215	rab42a	86	43.716	ENSDARG00000037884	rab30	89	43.716
ENSDARG00000034215	rab42a	99	38.095	ENSDARG00000052954	rab25b	97	38.095
ENSDARG00000034215	rab42a	84	42.135	ENSDARG00000056479	rab1bb	88	42.135
ENSDARG00000034215	rab42a	97	34.951	ENSDARG00000029885	rab41	93	34.951
ENSDARG00000034215	rab42a	80	42.105	ENSDARG00000034771	rab13	85	42.105
ENSDARG00000034215	rab42a	77	37.725	ENSDARG00000103391	rab9b	82	37.725
ENSDARG00000034215	rab42a	99	38.208	ENSDARG00000041878	rab11ba	98	38.424
ENSDARG00000034215	rab42a	97	32.536	ENSDARG00000026098	si:dkey-13a21.4	97	32.536
ENSDARG00000034215	rab42a	97	33.495	ENSDARG00000103714	rab6a	94	33.495
ENSDARG00000034215	rab42a	69	45.270	ENSDARG00000052290	rab33ba	62	45.270
ENSDARG00000034215	rab42a	74	45.223	ENSDARG00000102078	CABZ01072548.1	79	45.223
ENSDARG00000034215	rab42a	89	33.333	ENSDARG00000007257	rab5ab	88	33.333
ENSDARG00000034215	rab42a	78	36.905	ENSDARG00000036252	rras2	83	36.628
ENSDARG00000034215	rab42a	84	32.022	ENSDARG00000038225	nras	99	31.414
ENSDARG00000034215	rab42a	100	38.967	ENSDARG00000033056	zgc:171927	99	38.967
ENSDARG00000034215	rab42a	83	40.341	ENSDARG00000098344	rab18b	85	40.341
ENSDARG00000034215	rab42a	69	42.568	ENSDARG00000003257	zgc:101559	63	42.568
ENSDARG00000034215	rab42a	58	30.400	ENSDARG00000006915	arl8ba	64	30.400
ENSDARG00000034215	rab42a	100	58.685	ENSDARG00000019312	rab39ba	100	58.685
ENSDARG00000034215	rab42a	71	37.500	ENSDARG00000075285	si:ch73-116o1.2	78	37.195
ENSDARG00000034215	rab42a	95	30.435	ENSDARG00000014058	rab36	79	30.435
ENSDARG00000034215	rab42a	87	42.703	ENSDARG00000029663	rab1ab	90	42.703
ENSDARG00000034215	rab42a	76	35.542	ENSDARG00000020497	rab7a	79	35.542
ENSDARG00000034215	rab42a	80	32.948	ENSDARG00000045628	rab34a	71	32.948
ENSDARG00000034215	rab42a	80	45.614	ENSDARG00000103934	megf8	98	45.614
ENSDARG00000034215	rab42a	99	37.736	ENSDARG00000090086	rab11bb	96	37.736
ENSDARG00000034215	rab42a	100	47.664	ENSDARG00000102580	CU571310.1	99	47.664
ENSDARG00000034215	rab42a	97	33.981	ENSDARG00000034522	rab6ba	94	33.981
ENSDARG00000034215	rab42a	79	41.071	ENSDARG00000026484	rab15	78	41.071
ENSDARG00000034215	rab42a	85	42.308	ENSDARG00000100379	si:dkey-34d22.2	98	42.308
ENSDARG00000034215	rab42a	69	38.776	ENSDARG00000004151	rab23	70	36.310
ENSDARG00000034215	rab42a	95	31.527	ENSDARG00000063321	rabl2	88	31.527
ENSDARG00000034215	rab42a	88	47.872	ENSDARG00000020261	rab2a	88	47.872
ENSDARG00000034215	rab42a	98	39.535	ENSDARG00000035188	rab14l	97	39.535
ENSDARG00000034215	rab42a	82	41.714	ENSDARG00000037967	si:dkey-16l2.16	88	49.057
ENSDARG00000034215	rab42a	80	40.698	ENSDARG00000089428	rab12	86	37.864
ENSDARG00000034215	rab42a	83	31.579	ENSDARG00000015807	rab22a	96	31.579
ENSDARG00000034215	rab42a	77	42.683	ENSDARG00000058425	rab35b	80	42.683
ENSDARG00000034215	rab42a	80	33.714	ENSDARG00000010977	rab34b	80	31.068
ENSDARG00000034215	rab42a	86	41.304	ENSDARG00000058044	rab1ba	91	41.304
ENSDARG00000034215	rab42a	99	39.048	ENSDARG00000041450	rab11a	97	39.048
ENSDARG00000034215	rab42a	69	41.216	ENSDARG00000057394	rab33a	62	41.216
ENSDARG00000034215	rab42a	84	42.697	ENSDARG00000052263	rab1aa	88	42.697
ENSDARG00000034215	rab42a	97	33.010	ENSDARG00000031343	rab6bb	94	33.010
ENSDARG00000034215	rab42a	99	39.048	ENSDARG00000058800	rab25a	97	39.048
ENSDARG00000034215	rab42a	86	32.086	ENSDARG00000021287	rab7b	90	32.086
ENSDARG00000034215	rab42a	71	32.450	ENSDARG00000006553	rras	83	31.707
ENSDARG00000034215	rab42a	71	35.294	ENSDARG00000062865	mras	83	34.839
ENSDARG00000034215	rab42a	100	59.624	ENSDARG00000036501	rab39bb	100	59.624
ENSDARG00000034215	rab42a	71	35.099	ENSDARG00000013161	zgc:55558	86	34.146
ENSDARG00000034215	rab42a	78	37.059	ENSDARG00000045027	rab9a	84	37.059
ENSDARG00000034215	rab42a	84	39.326	ENSDARG00000114797	rab3b	80	39.326
ENSDARG00000034215	rab42a	77	35.366	ENSDARG00000018602	rab5aa	75	35.366
ENSDARG00000034215	rab42a	98	40.000	ENSDARG00000074246	rab14	97	40.000
ENSDARG00000034215	rab42a	97	40.191	ENSDARG00000014340	rab11al	95	40.191
ENSDARG00000034215	rab42a	68	40.690	ENSDARG00000018107	rab3da	85	40.690

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000034215	rab42a	100	89.908	ENSAPOG00000009188	rab42a	100	91.743	Acanthochromis_polyacanthus
ENSDARG00000034215	rab42a	100	89.908	ENSACIG00000003102	rab42a	100	90.826	Amphilophus_citrinellus
ENSDARG00000034215	rab42a	100	88.991	ENSAOCG00000012921	rab42a	83	90.367	Amphiprion_ocellaris
ENSDARG00000034215	rab42a	100	88.991	ENSAPEG00000007713	rab42a	83	90.367	Amphiprion_percula
ENSDARG00000034215	rab42a	100	89.450	ENSATEG00000009052	rab42a	100	89.450	Anabas_testudineus
ENSDARG00000034215	rab42a	100	91.244	ENSACLG00000007514	rab42a	100	91.244	Astatotilapia_calliptera
ENSDARG00000034215	rab42a	100	95.305	ENSAMXG00000032729	rab42a	100	95.305	Astyanax_mexicanus
ENSDARG00000034215	rab42a	100	87.615	ENSCSEG00000010582	rab42a	100	87.615	Cynoglossus_semilaevis
ENSDARG00000034215	rab42a	100	89.352	ENSELUG00000010345	rab42a	100	89.352	Esox_lucius
ENSDARG00000034215	rab42a	100	90.367	ENSFHEG00000013106	rab42a	100	90.367	Fundulus_heteroclitus
ENSDARG00000034215	rab42a	100	89.908	ENSGAFG00000002141	rab42a	100	89.908	Gambusia_affinis
ENSDARG00000034215	rab42a	100	91.244	ENSHBUG00000015126	rab42a	82	91.244	Haplochromis_burtoni
ENSDARG00000034215	rab42a	100	93.897	ENSIPUG00000011376	rab42a	100	93.897	Ictalurus_punctatus
ENSDARG00000034215	rab42a	100	89.450	ENSKMAG00000007267	rab42a	100	90.367	Kryptolebias_marmoratus
ENSDARG00000034215	rab42a	100	89.401	ENSLBEG00000001193	rab42a	100	90.323	Labrus_bergylta
ENSDARG00000034215	rab42a	100	64.789	ENSLACG00000012755	-	100	64.789	Latimeria_chalumnae
ENSDARG00000034215	rab42a	100	50.000	ENSLOCG00000015825	-	99	50.000	Lepisosteus_oculatus
ENSDARG00000034215	rab42a	100	85.915	ENSLOCG00000003453	rab42a	100	85.915	Lepisosteus_oculatus
ENSDARG00000034215	rab42a	100	89.908	ENSMAMG00000002296	rab42a	100	91.284	Mastacembelus_armatus
ENSDARG00000034215	rab42a	100	91.244	ENSMZEG00005012460	rab42a	82	91.244	Maylandia_zebra
ENSDARG00000034215	rab42a	100	88.532	ENSMMOG00000014358	rab42a	100	88.532	Mola_mola
ENSDARG00000034215	rab42a	100	91.284	ENSNBRG00000021487	rab42a	82	91.284	Neolamprologus_brichardi
ENSDARG00000034215	rab42a	100	91.284	ENSORLG00000022335	rab42a	100	91.284	Oryzias_latipes
ENSDARG00000034215	rab42a	100	91.284	ENSORLG00020013895	rab42a	100	91.284	Oryzias_latipes_hni
ENSDARG00000034215	rab42a	100	91.284	ENSORLG00015004273	rab42a	100	91.284	Oryzias_latipes_hsok
ENSDARG00000034215	rab42a	100	91.284	ENSOMEG00000020418	rab42a	100	91.284	Oryzias_melastigma
ENSDARG00000034215	rab42a	100	78.404	ENSPKIG00000021215	-	100	78.404	Paramormyrops_kingsleyae
ENSDARG00000034215	rab42a	99	47.642	ENSPKIG00000015234	-	99	47.642	Paramormyrops_kingsleyae
ENSDARG00000034215	rab42a	92	94.416	ENSPMGG00000024112	rab42a	90	94.416	Periophthalmus_magnuspinnatus
ENSDARG00000034215	rab42a	100	89.908	ENSPFOG00000004838	rab42a	82	89.908	Poecilia_formosa
ENSDARG00000034215	rab42a	100	89.908	ENSPLAG00000005628	rab42a	100	89.908	Poecilia_latipinna
ENSDARG00000034215	rab42a	100	89.908	ENSPMEG00000019497	rab42a	100	89.908	Poecilia_mexicana
ENSDARG00000034215	rab42a	100	89.908	ENSPREG00000013962	rab42a	100	89.908	Poecilia_reticulata
ENSDARG00000034215	rab42a	100	91.244	ENSPNYG00000010325	rab42a	82	91.244	Pundamilia_nyererei
ENSDARG00000034215	rab42a	100	96.244	ENSPNAG00000016567	rab42a	100	96.244	Pygocentrus_nattereri
ENSDARG00000034215	rab42a	100	46.262	ENSSFOG00015016000	-	97	46.262	Scleropages_formosus
ENSDARG00000034215	rab42a	100	88.263	ENSSFOG00015020732	rab42a	100	88.263	Scleropages_formosus
ENSDARG00000034215	rab42a	100	89.450	ENSSMAG00000020311	rab42a	100	89.450	Scophthalmus_maximus
ENSDARG00000034215	rab42a	100	91.743	ENSSDUG00000011851	rab42a	100	91.743	Seriola_dumerili
ENSDARG00000034215	rab42a	100	91.743	ENSSLDG00000020354	rab42a	100	91.743	Seriola_lalandi_dorsalis
ENSDARG00000034215	rab42a	100	89.908	ENSSPAG00000016167	rab42a	100	91.284	Stegastes_partitus
ENSDARG00000034215	rab42a	100	91.284	ENSTRUG00000010224	rab42a	100	91.284	Takifugu_rubripes
ENSDARG00000034215	rab42a	100	90.367	ENSXCOG00000003428	rab42a	100	90.367	Xiphophorus_couchianus
ENSDARG00000034215	rab42a	100	90.367	ENSXMAG00000028376	rab42a	100	90.367	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process