EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000034771 (Gene tree)
Gene ID: 373105
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13000 bases
Position: chr16:23796612-23809611
Accession: ZDB-GENE-030826-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000046921	MMR_HSR1	PF01926.23	5.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000046922	-	1823	-	ENSDARP00000046921	200 (aa)	-	Q7T3A4
ENSDART00000131698	-	499	-	ENSDARP00000118739	96 (aa)	-	E9QI28

Gene Model

Click here to download ENSDARG00000034771's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000034771's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000034771	rab13	98	53.234	ENSDARG00000052263	rab1aa	98	53.234
ENSDARG00000034771	rab13	63	30.000	ENSDARG00000063223	arl14	63	30.000
ENSDARG00000034771	rab13	81	35.976	ENSDARG00000062865	mras	100	31.892
ENSDARG00000034771	rab13	97	41.951	ENSDARG00000041450	rab11a	95	41.951
ENSDARG00000034771	rab13	83	44.242	ENSDARG00000035188	rab14l	77	44.242
ENSDARG00000034771	rab13	90	32.418	ENSDARG00000036252	rras2	94	32.990
ENSDARG00000034771	rab13	81	40.373	ENSDARG00000015807	rab22a	82	40.373
ENSDARG00000034771	rab13	85	42.105	ENSDARG00000034215	rab42a	80	42.105
ENSDARG00000034771	rab13	61	31.343	ENSDARG00000057857	arfrp1	70	31.343
ENSDARG00000034771	rab13	88	41.053	ENSDARG00000031343	rab6bb	91	41.053
ENSDARG00000034771	rab13	95	38.693	ENSDARG00000003257	zgc:101559	84	38.693
ENSDARG00000034771	rab13	85	46.512	ENSDARG00000019312	rab39ba	81	46.512
ENSDARG00000034771	rab13	85	46.512	ENSDARG00000036501	rab39bb	81	46.512
ENSDARG00000034771	rab13	85	38.506	ENSDARG00000087243	zgc:100918	85	38.506
ENSDARG00000034771	rab13	85	37.931	ENSDARG00000020497	rab7a	84	37.931
ENSDARG00000034771	rab13	85	49.112	ENSDARG00000037967	si:dkey-16l2.16	92	55.046
ENSDARG00000034771	rab13	96	41.146	ENSDARG00000052954	rab25b	91	41.146
ENSDARG00000034771	rab13	86	38.596	ENSDARG00000004151	rab23	76	38.251
ENSDARG00000034771	rab13	53	47.170	ENSDARG00000099205	CABZ01081908.1	92	47.170
ENSDARG00000034771	rab13	89	50.847	ENSDARG00000058425	rab35b	100	46.305
ENSDARG00000034771	rab13	85	37.791	ENSDARG00000102580	CU571310.1	81	37.791
ENSDARG00000034771	rab13	73	38.255	ENSDARG00000010977	rab34b	63	39.375
ENSDARG00000034771	rab13	85	30.899	ENSDARG00000070916	dnajc27	65	30.899
ENSDARG00000034771	rab13	80	44.512	ENSDARG00000057394	rab33a	69	44.512
ENSDARG00000034771	rab13	96	52.792	ENSDARG00000026484	rab15	92	52.792
ENSDARG00000034771	rab13	98	52.284	ENSDARG00000029663	rab1ab	98	52.284
ENSDARG00000034771	rab13	80	33.333	ENSDARG00000046013	rasl11a	67	33.333
ENSDARG00000034771	rab13	79	41.875	ENSDARG00000045628	rab34a	66	41.875
ENSDARG00000034771	rab13	81	36.420	ENSDARG00000010844	kras	98	35.233
ENSDARG00000034771	rab13	81	37.423	ENSDARG00000075285	si:ch73-116o1.2	78	37.423
ENSDARG00000034771	rab13	85	38.506	ENSDARG00000021287	rab7b	85	38.506
ENSDARG00000034771	rab13	95	41.026	ENSDARG00000055291	rab18a	93	41.026
ENSDARG00000034771	rab13	71	54.225	ENSDARG00000018107	rab3da	85	54.225
ENSDARG00000034771	rab13	83	45.455	ENSDARG00000074246	rab14	77	45.455
ENSDARG00000034771	rab13	90	55.307	ENSDARG00000058044	rab1ba	87	55.747
ENSDARG00000034771	rab13	82	39.394	ENSDARG00000100379	si:dkey-34d22.2	89	39.394
ENSDARG00000034771	rab13	79	45.570	ENSDARG00000058800	rab25a	75	45.570
ENSDARG00000034771	rab13	77	31.373	ENSDARG00000063321	rabl2	68	31.373
ENSDARG00000034771	rab13	79	44.937	ENSDARG00000034522	rab6ba	76	44.937
ENSDARG00000034771	rab13	83	47.590	ENSDARG00000041878	rab11ba	78	46.541
ENSDARG00000034771	rab13	77	43.226	ENSDARG00000052290	rab33ba	65	43.226
ENSDARG00000034771	rab13	83	48.193	ENSDARG00000090086	rab11bb	76	48.193
ENSDARG00000034771	rab13	95	40.104	ENSDARG00000018602	rab5aa	89	40.104
ENSDARG00000034771	rab13	96	33.161	ENSDARG00000013161	zgc:55558	98	32.828
ENSDARG00000034771	rab13	84	47.024	ENSDARG00000020261	rab2a	79	47.024
ENSDARG00000034771	rab13	82	39.053	ENSDARG00000045027	rab9a	83	39.053
ENSDARG00000034771	rab13	86	35.838	ENSDARG00000098497	hrasa	90	35.838
ENSDARG00000034771	rab13	96	34.872	ENSDARG00000006553	rras	97	34.872
ENSDARG00000034771	rab13	97	53.030	ENSDARG00000056479	rab1bb	98	53.030
ENSDARG00000034771	rab13	95	38.776	ENSDARG00000026098	si:dkey-13a21.4	95	38.776
ENSDARG00000034771	rab13	82	38.462	ENSDARG00000103391	rab9b	83	38.462
ENSDARG00000034771	rab13	79	42.138	ENSDARG00000014058	rab36	61	42.138
ENSDARG00000034771	rab13	86	35.260	ENSDARG00000005651	hrasb	98	34.965
ENSDARG00000034771	rab13	81	35.185	ENSDARG00000038225	nras	85	35.185
ENSDARG00000034771	rab13	95	38.974	ENSDARG00000007257	rab5ab	89	38.974
ENSDARG00000034771	rab13	79	45.570	ENSDARG00000029885	rab41	75	45.570
ENSDARG00000034771	rab13	84	48.214	ENSDARG00000037884	rab30	84	48.214
ENSDARG00000034771	rab13	79	46.203	ENSDARG00000103714	rab6a	76	46.203
ENSDARG00000034771	rab13	86	72.674	ENSDARG00000103934	megf8	99	72.674
ENSDARG00000034771	rab13	84	50.595	ENSDARG00000089428	rab12	73	49.419
ENSDARG00000034771	rab13	98	46.766	ENSDARG00000114797	rab3b	93	46.766
ENSDARG00000034771	rab13	84	53.892	ENSDARG00000102078	CABZ01072548.1	85	53.892
ENSDARG00000034771	rab13	97	44.059	ENSDARG00000014340	rab11al	94	44.059
ENSDARG00000034771	rab13	85	55.030	ENSDARG00000033056	zgc:171927	80	55.030
ENSDARG00000034771	rab13	95	41.026	ENSDARG00000098344	rab18b	93	41.026

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000034771	rab13	99	78.218	ENSG00000143545	RAB13	99	78.218	Homo_sapiens
ENSDARG00000034771	rab13	91	91.758	ENSACIG00000008584	rab13	88	91.758	Amphilophus_citrinellus
ENSDARG00000034771	rab13	99	78.261	ENSANAG00000030247	-	99	78.261	Aotus_nancymaae
ENSDARG00000034771	rab13	100	93.564	ENSAMXG00000030712	rab13	100	93.564	Astyanax_mexicanus
ENSDARG00000034771	rab13	99	78.641	ENSBTAG00000017604	RAB13	99	78.641	Bos_taurus
ENSDARG00000034771	rab13	81	47.531	WBGene00019317	K02E10.1	74	47.531	Caenorhabditis_elegans
ENSDARG00000034771	rab13	95	82.105	ENSCJAG00000009933	-	99	78.713	Callithrix_jacchus
ENSDARG00000034771	rab13	99	77.670	ENSCHIG00000022271	-	99	77.670	Capra_hircus
ENSDARG00000034771	rab13	99	78.218	ENSCPOG00000011491	-	99	78.218	Cavia_porcellus
ENSDARG00000034771	rab13	99	78.218	ENSCCAG00000028502	-	99	78.218	Cebus_capucinus
ENSDARG00000034771	rab13	99	78.218	ENSCATG00000041779	-	99	78.218	Cercocebus_atys
ENSDARG00000034771	rab13	99	77.723	ENSCLAG00000006603	-	99	77.723	Chinchilla_lanigera
ENSDARG00000034771	rab13	99	78.218	ENSCANG00000036573	-	99	78.218	Colobus_angolensis_palliatus
ENSDARG00000034771	rab13	99	78.922	ENSCGRG00001021505	Rab13	99	78.922	Cricetulus_griseus_chok1gshd
ENSDARG00000034771	rab13	99	78.922	ENSCGRG00000012126	Rab13	99	78.922	Cricetulus_griseus_crigri
ENSDARG00000034771	rab13	100	91.500	ENSCSEG00000002358	rab13	100	91.500	Cynoglossus_semilaevis
ENSDARG00000034771	rab13	99	80.693	ENSDORG00000001591	Rab13	99	80.693	Dipodomys_ordii
ENSDARG00000034771	rab13	99	78.713	ENSEASG00005000683	-	99	78.713	Equus_asinus_asinus
ENSDARG00000034771	rab13	99	78.713	ENSECAG00000016551	RAB13	99	78.713	Equus_caballus
ENSDARG00000034771	rab13	100	75.369	ENSEEUG00000001233	-	100	75.369	Erinaceus_europaeus
ENSDARG00000034771	rab13	100	92.000	ENSELUG00000012801	rab13	100	92.000	Esox_lucius
ENSDARG00000034771	rab13	99	79.208	ENSFCAG00000045269	-	99	79.208	Felis_catus
ENSDARG00000034771	rab13	66	88.636	ENSFDAG00000014469	-	100	88.636	Fukomys_damarensis
ENSDARG00000034771	rab13	100	89.000	ENSFHEG00000021221	rab13	97	93.785	Fundulus_heteroclitus
ENSDARG00000034771	rab13	100	92.000	ENSGACG00000011925	rab13	99	92.000	Gasterosteus_aculeatus
ENSDARG00000034771	rab13	91	84.153	ENSGAGG00000000742	-	100	80.693	Gopherus_agassizii
ENSDARG00000034771	rab13	99	78.218	ENSGGOG00000023693	RAB13	99	78.218	Gorilla_gorilla
ENSDARG00000034771	rab13	99	76.617	ENSHGLG00000008749	RAB13	99	76.617	Heterocephalus_glaber_female
ENSDARG00000034771	rab13	99	76.617	ENSHGLG00100013608	RAB13	99	76.617	Heterocephalus_glaber_male
ENSDARG00000034771	rab13	100	87.000	ENSHCOG00000007440	rab13	97	95.480	Hippocampus_comes
ENSDARG00000034771	rab13	100	91.542	ENSIPUG00000003199	rab13	100	91.542	Ictalurus_punctatus
ENSDARG00000034771	rab13	99	79.512	ENSSTOG00000011222	-	99	79.512	Ictidomys_tridecemlineatus
ENSDARG00000034771	rab13	99	78.713	ENSJJAG00000010575	Rab13	99	78.713	Jaculus_jaculus
ENSDARG00000034771	rab13	100	88.500	ENSKMAG00000001908	rab13	100	88.500	Kryptolebias_marmoratus
ENSDARG00000034771	rab13	100	92.500	ENSLBEG00000026779	rab13	100	92.500	Labrus_bergylta
ENSDARG00000034771	rab13	89	77.401	ENSLACG00000008103	-	99	77.401	Latimeria_chalumnae
ENSDARG00000034771	rab13	99	78.218	ENSMFAG00000041018	RAB13	99	78.218	Macaca_fascicularis
ENSDARG00000034771	rab13	99	78.218	ENSMNEG00000028951	-	99	78.218	Macaca_nemestrina
ENSDARG00000034771	rab13	99	78.218	ENSMLEG00000042247	-	99	78.218	Mandrillus_leucophaeus
ENSDARG00000034771	rab13	100	92.000	ENSMAMG00000014602	rab13	100	92.000	Mastacembelus_armatus
ENSDARG00000034771	rab13	99	78.431	ENSMAUG00000015713	Rab13	99	78.431	Mesocricetus_auratus
ENSDARG00000034771	rab13	99	78.607	ENSMICG00000010340	-	99	78.607	Microcebus_murinus
ENSDARG00000034771	rab13	99	79.208	ENSMOCG00000021448	Rab13	99	79.208	Microtus_ochrogaster
ENSDARG00000034771	rab13	99	80.000	ENSMODG00000017295	-	84	80.000	Monodelphis_domestica
ENSDARG00000034771	rab13	99	76.699	MGP_CAROLIEiJ_G0025227	Rab13	99	76.699	Mus_caroli
ENSDARG00000034771	rab13	99	77.184	ENSMUSG00000027935	Rab13	99	77.184	Mus_musculus
ENSDARG00000034771	rab13	100	77.073	MGP_PahariEiJ_G0026671	Rab13	100	77.073	Mus_pahari
ENSDARG00000034771	rab13	99	78.431	ENSNGAG00000010309	Rab13	99	78.431	Nannospalax_galili
ENSDARG00000034771	rab13	100	90.500	ENSNBRG00000004124	rab13	100	90.500	Neolamprologus_brichardi
ENSDARG00000034771	rab13	99	78.218	ENSNLEG00000028944	-	96	82.011	Nomascus_leucogenys
ENSDARG00000034771	rab13	99	80.198	ENSMEUG00000009667	-	99	80.198	Notamacropus_eugenii
ENSDARG00000034771	rab13	99	77.723	ENSODEG00000010443	-	99	77.723	Octodon_degus
ENSDARG00000034771	rab13	64	88.976	ENSODEG00000012634	-	100	88.976	Octodon_degus
ENSDARG00000034771	rab13	100	88.614	ENSONIG00000006340	rab13	100	88.614	Oreochromis_niloticus
ENSDARG00000034771	rab13	87	86.705	ENSOCUG00000006286	-	97	86.705	Oryctolagus_cuniculus
ENSDARG00000034771	rab13	100	93.000	ENSOMEG00000008210	rab13	100	93.000	Oryzias_melastigma
ENSDARG00000034771	rab13	99	77.723	ENSOGAG00000016969	-	99	77.723	Otolemur_garnettii
ENSDARG00000034771	rab13	99	78.218	ENSPPAG00000028435	-	99	78.218	Pan_paniscus
ENSDARG00000034771	rab13	99	79.208	ENSPPRG00000008865	-	99	79.208	Panthera_pardus
ENSDARG00000034771	rab13	99	78.218	ENSPTRG00000001370	RAB13	99	78.218	Pan_troglodytes
ENSDARG00000034771	rab13	99	78.218	ENSPANG00000004479	-	99	78.218	Papio_anubis
ENSDARG00000034771	rab13	100	89.500	ENSPMGG00000007680	rab13	100	89.500	Periophthalmus_magnuspinnatus
ENSDARG00000034771	rab13	54	91.667	ENSPEMG00000017353	-	81	91.667	Peromyscus_maniculatus_bairdii
ENSDARG00000034771	rab13	99	80.198	ENSPCIG00000029350	-	99	80.198	Phascolarctos_cinereus
ENSDARG00000034771	rab13	89	94.350	ENSPLAG00000005832	RAB13	95	94.350	Poecilia_latipinna
ENSDARG00000034771	rab13	100	90.500	ENSPREG00000017567	rab13	100	90.500	Poecilia_reticulata
ENSDARG00000034771	rab13	99	78.218	ENSPPYG00000000790	-	99	78.218	Pongo_abelii
ENSDARG00000034771	rab13	99	79.104	ENSPCOG00000012189	-	99	79.104	Propithecus_coquereli
ENSDARG00000034771	rab13	99	78.109	ENSPVAG00000011095	-	99	78.109	Pteropus_vampyrus
ENSDARG00000034771	rab13	89	96.045	ENSPNAG00000004189	rab13	94	96.045	Pygocentrus_nattereri
ENSDARG00000034771	rab13	99	77.941	ENSRNOG00000016733	Rab13	99	77.941	Rattus_norvegicus
ENSDARG00000034771	rab13	99	78.218	ENSRBIG00000008552	-	99	78.218	Rhinopithecus_bieti
ENSDARG00000034771	rab13	99	78.218	ENSRROG00000036885	-	99	78.218	Rhinopithecus_roxellana
ENSDARG00000034771	rab13	99	78.607	ENSSBOG00000020342	-	99	78.607	Saimiri_boliviensis_boliviensis
ENSDARG00000034771	rab13	99	81.188	ENSSHAG00000011866	-	99	81.188	Sarcophilus_harrisii
ENSDARG00000034771	rab13	99	78.713	ENSSSCG00000006564	-	99	78.713	Sus_scrofa
ENSDARG00000034771	rab13	100	92.000	ENSTRUG00000024177	rab13	100	92.000	Takifugu_rubripes
ENSDARG00000034771	rab13	99	79.208	ENSTBEG00000012734	-	99	79.208	Tupaia_belangeri
ENSDARG00000034771	rab13	99	78.713	ENSTTRG00000011183	-	99	78.713	Tursiops_truncatus
ENSDARG00000034771	rab13	69	81.884	ENSXETG00000020729	rab13	100	75.625	Xenopus_tropicalis
ENSDARG00000034771	rab13	89	93.220	ENSXCOG00000019533	rab13	95	93.220	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001525	angiogenesis	21543326.	IMP	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005768	endosome	-	IEA	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005802	trans-Golgi network	-	ISS	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISS	Component
GO:0005923	bicellular tight junction	-	IEA	Component
GO:0005923	bicellular tight junction	-	ISS	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0010737	protein kinase A signaling	-	ISS	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016328	lateral plasma membrane	-	ISS	Component
GO:0030027	lamellipodium	-	ISS	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030139	endocytic vesicle	-	ISS	Component
GO:0030659	cytoplasmic vesicle membrane	-	IEA	Component
GO:0030866	cortical actin cytoskeleton organization	-	ISS	Process
GO:0031175	neuron projection development	-	ISS	Process
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0032456	endocytic recycling	-	ISS	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0032593	insulin-responsive compartment	-	ISS	Component
GO:0032869	cellular response to insulin stimulus	-	ISS	Process
GO:0035767	endothelial cell chemotaxis	-	ISS	Process
GO:0042995	cell projection	-	IEA	Component
GO:0043005	neuron projection	-	ISS	Component
GO:0044795	trans-Golgi network to recycling endosome transport	-	ISS	Process
GO:0055037	recycling endosome	-	ISS	Component
GO:0055038	recycling endosome membrane	-	IEA	Component
GO:0070830	bicellular tight junction assembly	-	ISS	Process
GO:0072659	protein localization to plasma membrane	-	ISS	Process
GO:1902463	protein localization to cell leading edge	-	ISS	Process