EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000035146 (Gene tree)
Gene ID: 554099
Gene Symbol: polr2j
Alias: rpb11|zgc:110005
Full Name: polymerase (RNA) II (DNA directed) polypeptide J
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5607 bases
Position: chr5:61459422-61465028
Accession: ZDB-GENE-050522-120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000050901	RNA_pol_L_2	PF13656.6	6.3e-29	1	1
ENSDARP00000050901	RNA_pol_L	PF01193.24	3.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000050902	-	631	-	ENSDARP00000050901	117 (aa)	-	Q4VBU5

Gene Model

Click here to download ENSDARG00000035146's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000035146's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000035146	polr2j	73	34.884	ENSDARG00000037570	polr1d	77	34.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000035146	polr2j	91	93.458	ENSG00000228049	POLR2J2	94	90.826	Homo_sapiens
ENSDARG00000035146	polr2j	100	95.726	ENSG00000005075	POLR2J	100	95.726	Homo_sapiens
ENSDARG00000035146	polr2j	100	96.581	ENSAPOG00000019538	polr2j	100	96.581	Acanthochromis_polyacanthus
ENSDARG00000035146	polr2j	100	88.189	ENSAMEG00000015480	-	100	88.189	Ailuropoda_melanoleuca
ENSDARG00000035146	polr2j	93	73.636	ENSACIG00000014549	POLR2J2	91	73.636	Amphilophus_citrinellus
ENSDARG00000035146	polr2j	100	95.726	ENSAOCG00000006937	polr2j	100	95.726	Amphiprion_ocellaris
ENSDARG00000035146	polr2j	100	96.581	ENSAPEG00000021761	polr2j	100	96.581	Amphiprion_percula
ENSDARG00000035146	polr2j	100	96.581	ENSATEG00000009731	polr2j	100	96.581	Anabas_testudineus
ENSDARG00000035146	polr2j	100	96.581	ENSATEG00000013312	-	100	96.581	Anabas_testudineus
ENSDARG00000035146	polr2j	86	93.069	ENSAPLG00000003744	-	100	93.069	Anas_platyrhynchos
ENSDARG00000035146	polr2j	100	86.325	ENSACAG00000000251	POLR2J	100	86.325	Anolis_carolinensis
ENSDARG00000035146	polr2j	100	96.581	ENSACLG00000014564	polr2j	100	96.581	Astatotilapia_calliptera
ENSDARG00000035146	polr2j	100	99.145	ENSAMXG00000007517	polr2j	100	99.145	Astyanax_mexicanus
ENSDARG00000035146	polr2j	62	65.753	ENSBTAG00000048046	-	61	65.753	Bos_taurus
ENSDARG00000035146	polr2j	94	67.273	WBGene00012187	rpb-11	89	67.273	Caenorhabditis_elegans
ENSDARG00000035146	polr2j	100	95.726	ENSCJAG00000016203	-	100	95.726	Callithrix_jacchus
ENSDARG00000035146	polr2j	100	95.726	ENSCAFG00000013683	-	100	95.726	Canis_familiaris
ENSDARG00000035146	polr2j	85	94.949	ENSTSYG00000029243	-	85	94.949	Carlito_syrichta
ENSDARG00000035146	polr2j	100	95.726	ENSCPOG00000001401	-	100	95.726	Cavia_porcellus
ENSDARG00000035146	polr2j	100	72.650	ENSCATG00000016595	-	96	83.516	Cercocebus_atys
ENSDARG00000035146	polr2j	100	95.726	ENSCLAG00000005238	-	100	95.726	Chinchilla_lanigera
ENSDARG00000035146	polr2j	100	95.726	ENSCSAG00000018092	-	100	95.726	Chlorocebus_sabaeus
ENSDARG00000035146	polr2j	100	82.051	ENSCING00000020531	-	100	82.051	Ciona_intestinalis
ENSDARG00000035146	polr2j	100	82.051	ENSCSAVG00000006948	-	100	82.051	Ciona_savignyi
ENSDARG00000035146	polr2j	100	95.726	ENSCGRG00001012814	Polr2j	100	95.726	Cricetulus_griseus_chok1gshd
ENSDARG00000035146	polr2j	100	82.051	ENSCGRG00000008433	Polr2j	100	82.051	Cricetulus_griseus_crigri
ENSDARG00000035146	polr2j	100	94.017	ENSCSEG00000020352	polr2j	100	94.017	Cynoglossus_semilaevis
ENSDARG00000035146	polr2j	100	95.726	ENSCVAG00000014267	polr2j	100	95.726	Cyprinodon_variegatus
ENSDARG00000035146	polr2j	100	95.726	ENSDORG00000005934	Polr2j	100	95.726	Dipodomys_ordii
ENSDARG00000035146	polr2j	98	79.130	FBgn0032634	Rpb11	98	79.130	Drosophila_melanogaster
ENSDARG00000035146	polr2j	100	65.812	ENSEBUG00000016100	polr2j	100	65.812	Eptatretus_burgeri
ENSDARG00000035146	polr2j	100	95.726	ENSEASG00005016864	-	100	95.726	Equus_asinus_asinus
ENSDARG00000035146	polr2j	100	97.436	ENSELUG00000012822	polr2j	100	97.436	Esox_lucius
ENSDARG00000035146	polr2j	100	95.726	ENSFCAG00000000377	-	100	95.726	Felis_catus
ENSDARG00000035146	polr2j	100	95.726	ENSFALG00000009523	POLR2J	100	95.726	Ficedula_albicollis
ENSDARG00000035146	polr2j	100	95.726	ENSFDAG00000010507	-	100	95.726	Fukomys_damarensis
ENSDARG00000035146	polr2j	100	96.581	ENSFHEG00000006625	polr2j	100	96.581	Fundulus_heteroclitus
ENSDARG00000035146	polr2j	100	97.436	ENSGMOG00000018207	polr2j	100	97.436	Gadus_morhua
ENSDARG00000035146	polr2j	100	95.726	ENSGALG00000030808	-	100	95.726	Gallus_gallus
ENSDARG00000035146	polr2j	100	96.581	ENSGAFG00000019555	polr2j	100	96.581	Gambusia_affinis
ENSDARG00000035146	polr2j	100	96.581	ENSGACG00000003310	polr2j	100	96.581	Gasterosteus_aculeatus
ENSDARG00000035146	polr2j	97	85.841	ENSGAGG00000018304	-	96	85.841	Gopherus_agassizii
ENSDARG00000035146	polr2j	85	90.000	ENSGGOG00000004519	-	80	90.000	Gorilla_gorilla
ENSDARG00000035146	polr2j	100	96.581	ENSHBUG00000008467	polr2j	100	96.581	Haplochromis_burtoni
ENSDARG00000035146	polr2j	100	95.726	ENSHGLG00000013598	POLR2J	100	95.726	Heterocephalus_glaber_female
ENSDARG00000035146	polr2j	100	95.726	ENSHGLG00100011242	POLR2J	100	95.726	Heterocephalus_glaber_male
ENSDARG00000035146	polr2j	100	97.436	ENSHCOG00000014827	polr2j	68	97.436	Hippocampus_comes
ENSDARG00000035146	polr2j	100	99.145	ENSIPUG00000023960	polr2j	100	99.145	Ictalurus_punctatus
ENSDARG00000035146	polr2j	100	95.726	ENSSTOG00000006377	POLR2J	100	95.726	Ictidomys_tridecemlineatus
ENSDARG00000035146	polr2j	100	90.598	ENSJJAG00000018834	-	100	90.598	Jaculus_jaculus
ENSDARG00000035146	polr2j	100	95.726	ENSJJAG00000013854	-	100	95.726	Jaculus_jaculus
ENSDARG00000035146	polr2j	100	96.581	ENSKMAG00000014581	polr2j	79	96.581	Kryptolebias_marmoratus
ENSDARG00000035146	polr2j	100	97.436	ENSLBEG00000005885	polr2j	100	97.436	Labrus_bergylta
ENSDARG00000035146	polr2j	100	99.145	ENSLOCG00000001885	polr2j	89	99.145	Lepisosteus_oculatus
ENSDARG00000035146	polr2j	100	95.726	ENSLAFG00000021507	-	100	95.726	Loxodonta_africana
ENSDARG00000035146	polr2j	100	86.154	ENSMMUG00000012019	POLR2J	100	86.154	Macaca_mulatta
ENSDARG00000035146	polr2j	100	97.436	ENSMAMG00000009374	polr2j	100	97.436	Mastacembelus_armatus
ENSDARG00000035146	polr2j	100	96.581	ENSMZEG00005011932	polr2j	100	96.581	Maylandia_zebra
ENSDARG00000035146	polr2j	100	95.726	ENSMGAG00000003534	POLR2J	100	95.726	Meleagris_gallopavo
ENSDARG00000035146	polr2j	100	95.726	ENSMAUG00000013049	Polr2j	100	95.726	Mesocricetus_auratus
ENSDARG00000035146	polr2j	80	90.426	ENSMICG00000026811	-	94	90.426	Microcebus_murinus
ENSDARG00000035146	polr2j	100	95.726	ENSMOCG00000001294	Polr2j	100	95.726	Microtus_ochrogaster
ENSDARG00000035146	polr2j	100	96.581	ENSMMOG00000013265	polr2j	100	96.581	Mola_mola
ENSDARG00000035146	polr2j	100	87.500	ENSMODG00000013617	-	100	87.500	Monodelphis_domestica
ENSDARG00000035146	polr2j	100	97.436	ENSMALG00000020749	polr2j	100	97.436	Monopterus_albus
ENSDARG00000035146	polr2j	100	95.726	MGP_CAROLIEiJ_G0027851	Polr2j	100	95.726	Mus_caroli
ENSDARG00000035146	polr2j	100	95.726	ENSMUSG00000039771	Polr2j	100	95.726	Mus_musculus
ENSDARG00000035146	polr2j	100	95.726	MGP_PahariEiJ_G0024434	Polr2j	100	95.726	Mus_pahari
ENSDARG00000035146	polr2j	100	95.726	MGP_SPRETEiJ_G0028853	Polr2j	100	95.726	Mus_spretus
ENSDARG00000035146	polr2j	100	95.726	ENSMLUG00000010467	POLR2J	100	95.726	Myotis_lucifugus
ENSDARG00000035146	polr2j	100	95.726	ENSNGAG00000023412	Polr2j	100	95.726	Nannospalax_galili
ENSDARG00000035146	polr2j	66	93.506	ENSNBRG00000006580	polr2j	59	93.506	Neolamprologus_brichardi
ENSDARG00000035146	polr2j	100	95.726	ENSODEG00000015648	-	100	95.726	Octodon_degus
ENSDARG00000035146	polr2j	100	74.359	ENSODEG00000008559	-	100	74.359	Octodon_degus
ENSDARG00000035146	polr2j	100	96.581	ENSONIG00000000259	polr2j	100	96.581	Oreochromis_niloticus
ENSDARG00000035146	polr2j	100	93.162	ENSOANG00000020912	POLR2J	100	93.162	Ornithorhynchus_anatinus
ENSDARG00000035146	polr2j	100	88.189	ENSOCUG00000023609	POLR2J	100	88.189	Oryctolagus_cuniculus
ENSDARG00000035146	polr2j	100	96.581	ENSORLG00000029046	polr2j	83	96.581	Oryzias_latipes
ENSDARG00000035146	polr2j	100	96.581	ENSORLG00020007625	polr2j	83	96.581	Oryzias_latipes_hni
ENSDARG00000035146	polr2j	100	96.581	ENSORLG00015003457	polr2j	83	96.581	Oryzias_latipes_hsok
ENSDARG00000035146	polr2j	100	95.726	ENSOMEG00000002097	polr2j	100	95.726	Oryzias_melastigma
ENSDARG00000035146	polr2j	100	71.094	ENSOGAG00000008250	-	100	71.094	Otolemur_garnettii
ENSDARG00000035146	polr2j	100	95.726	ENSOARG00000014204	-	98	95.726	Ovis_aries
ENSDARG00000035146	polr2j	100	95.726	ENSPPRG00000012439	-	100	95.726	Panthera_pardus
ENSDARG00000035146	polr2j	97	86.842	ENSPTIG00000018714	-	100	92.233	Panthera_tigris_altaica
ENSDARG00000035146	polr2j	85	94.000	ENSPSIG00000010173	-	100	94.000	Pelodiscus_sinensis
ENSDARG00000035146	polr2j	100	96.581	ENSPMGG00000021256	polr2j	100	96.581	Periophthalmus_magnuspinnatus
ENSDARG00000035146	polr2j	100	95.726	ENSPEMG00000015733	Polr2j	100	95.726	Peromyscus_maniculatus_bairdii
ENSDARG00000035146	polr2j	100	95.726	ENSPCIG00000009026	-	100	95.726	Phascolarctos_cinereus
ENSDARG00000035146	polr2j	100	96.581	ENSPFOG00000012001	polr2j	99	96.581	Poecilia_formosa
ENSDARG00000035146	polr2j	100	96.581	ENSPLAG00000014075	polr2j	100	96.581	Poecilia_latipinna
ENSDARG00000035146	polr2j	100	96.581	ENSPMEG00000020585	polr2j	100	96.581	Poecilia_mexicana
ENSDARG00000035146	polr2j	100	96.581	ENSPREG00000015255	polr2j	100	96.581	Poecilia_reticulata
ENSDARG00000035146	polr2j	100	95.726	ENSPCOG00000024573	-	100	95.726	Propithecus_coquereli
ENSDARG00000035146	polr2j	99	89.655	ENSPVAG00000017770	-	66	89.655	Pteropus_vampyrus
ENSDARG00000035146	polr2j	100	96.581	ENSPNYG00000014832	polr2j	100	96.581	Pundamilia_nyererei
ENSDARG00000035146	polr2j	100	98.291	ENSPNAG00000016595	polr2j	100	98.291	Pygocentrus_nattereri
ENSDARG00000035146	polr2j	100	95.726	ENSRNOG00000001430	Polr2j	100	95.726	Rattus_norvegicus
ENSDARG00000035146	polr2j	100	95.726	ENSSBOG00000025579	-	100	95.726	Saimiri_boliviensis_boliviensis
ENSDARG00000035146	polr2j	59	97.101	ENSSHAG00000010443	-	81	97.101	Sarcophilus_harrisii
ENSDARG00000035146	polr2j	93	96.330	ENSSFOG00015003371	polr2j	83	96.330	Scleropages_formosus
ENSDARG00000035146	polr2j	100	96.581	ENSSMAG00000006729	polr2j	100	96.581	Scophthalmus_maximus
ENSDARG00000035146	polr2j	100	96.581	ENSSDUG00000018490	polr2j	100	96.581	Seriola_dumerili
ENSDARG00000035146	polr2j	100	96.581	ENSSLDG00000022354	polr2j	100	96.581	Seriola_lalandi_dorsalis
ENSDARG00000035146	polr2j	100	95.726	ENSSPUG00000010802	-	100	95.726	Sphenodon_punctatus
ENSDARG00000035146	polr2j	100	96.581	ENSSPAG00000021953	polr2j	100	96.581	Stegastes_partitus
ENSDARG00000035146	polr2j	100	79.487	ENSSSCG00000003703	-	83	79.487	Sus_scrofa
ENSDARG00000035146	polr2j	100	95.726	ENSSSCG00000007688	-	100	95.726	Sus_scrofa
ENSDARG00000035146	polr2j	59	97.101	ENSTGUG00000004510	-	100	97.101	Taeniopygia_guttata
ENSDARG00000035146	polr2j	85	94.000	ENSTGUG00000004501	-	100	94.000	Taeniopygia_guttata
ENSDARG00000035146	polr2j	100	96.581	ENSTRUG00000020842	polr2j	100	96.581	Takifugu_rubripes
ENSDARG00000035146	polr2j	100	95.726	ENSTNIG00000002994	polr2j	100	95.726	Tetraodon_nigroviridis
ENSDARG00000035146	polr2j	91	79.439	ENSTBEG00000005797	-	70	79.439	Tupaia_belangeri
ENSDARG00000035146	polr2j	100	95.726	ENSUAMG00000011310	-	100	95.726	Ursus_americanus
ENSDARG00000035146	polr2j	100	95.726	ENSUMAG00000012594	-	100	95.726	Ursus_maritimus
ENSDARG00000035146	polr2j	100	95.726	ENSXETG00000001108	polr2j	100	95.726	Xenopus_tropicalis
ENSDARG00000035146	polr2j	100	96.581	ENSXMAG00000012422	polr2j	100	96.581	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0001055	RNA polymerase II activity	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	-	IEA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	IEA	Process
GO:0046983	protein dimerization activity	-	IEA	Function