EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000035391 (Gene tree)
Gene ID: 550275
Gene Symbol: ptcd2
Alias: zgc:112401
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 11061 bases
Position: chr5:35253457-35264517
Accession: ZDB-GENE-050417-82
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000097803	MRP-S27	PF10037.9	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000114981	-	1389	XM_005171851	ENSDARP00000097803	381 (aa)	XP_005171908	F1QQL7

Gene Model

Click here to download ENSDARG00000035391's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000035391's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000035391	ptcd2	97	44.118	ENSG00000049883	PTCD2	96	44.118	Homo_sapiens
ENSDARG00000035391	ptcd2	100	52.742	ENSAPOG00000020682	ptcd2	100	52.742	Acanthochromis_polyacanthus
ENSDARG00000035391	ptcd2	97	45.308	ENSAMEG00000007194	PTCD2	96	45.308	Ailuropoda_melanoleuca
ENSDARG00000035391	ptcd2	90	49.856	ENSACIG00000002053	ptcd2	100	49.856	Amphilophus_citrinellus
ENSDARG00000035391	ptcd2	100	53.786	ENSAOCG00000006616	ptcd2	98	53.786	Amphiprion_ocellaris
ENSDARG00000035391	ptcd2	100	53.525	ENSAPEG00000022926	ptcd2	98	53.525	Amphiprion_percula
ENSDARG00000035391	ptcd2	93	48.343	ENSACAG00000009747	PTCD2	92	48.343	Anolis_carolinensis
ENSDARG00000035391	ptcd2	94	45.429	ENSANAG00000029353	PTCD2	93	45.429	Aotus_nancymaae
ENSDARG00000035391	ptcd2	100	51.958	ENSACLG00000027742	ptcd2	98	51.958	Astatotilapia_calliptera
ENSDARG00000035391	ptcd2	95	53.134	ENSAMXG00000029404	ptcd2	98	53.134	Astyanax_mexicanus
ENSDARG00000035391	ptcd2	97	44.297	ENSBTAG00000014675	PTCD2	98	44.297	Bos_taurus
ENSDARG00000035391	ptcd2	97	44.533	ENSCJAG00000016364	PTCD2	96	44.533	Callithrix_jacchus
ENSDARG00000035391	ptcd2	97	45.040	ENSCAFG00000007982	PTCD2	87	45.040	Canis_familiaris
ENSDARG00000035391	ptcd2	90	45.821	ENSCAFG00020019147	PTCD2	97	45.821	Canis_lupus_dingo
ENSDARG00000035391	ptcd2	97	44.149	ENSCHIG00000017118	PTCD2	98	44.149	Capra_hircus
ENSDARG00000035391	ptcd2	93	44.382	ENSCPOG00000040168	PTCD2	93	44.382	Cavia_porcellus
ENSDARG00000035391	ptcd2	74	47.887	ENSCCAG00000021996	-	87	47.887	Cebus_capucinus
ENSDARG00000035391	ptcd2	94	45.152	ENSCCAG00000029389	-	93	45.152	Cebus_capucinus
ENSDARG00000035391	ptcd2	99	44.241	ENSCATG00000019069	PTCD2	99	44.241	Cercocebus_atys
ENSDARG00000035391	ptcd2	98	44.180	ENSCLAG00000000072	PTCD2	98	44.180	Chinchilla_lanigera
ENSDARG00000035391	ptcd2	99	44.764	ENSCSAG00000015623	PTCD2	99	44.764	Chlorocebus_sabaeus
ENSDARG00000035391	ptcd2	70	53.529	ENSCHOG00000010634	PTCD2	77	53.529	Choloepus_hoffmanni
ENSDARG00000035391	ptcd2	97	46.917	ENSCPBG00000000216	PTCD2	95	46.917	Chrysemys_picta_bellii
ENSDARG00000035391	ptcd2	99	44.764	ENSCANG00000035636	PTCD2	98	44.764	Colobus_angolensis_palliatus
ENSDARG00000035391	ptcd2	96	45.135	ENSCGRG00001015289	Ptcd2	81	45.135	Cricetulus_griseus_chok1gshd
ENSDARG00000035391	ptcd2	96	45.135	ENSCGRG00000006193	Ptcd2	81	45.135	Cricetulus_griseus_crigri
ENSDARG00000035391	ptcd2	95	51.240	ENSCVAG00000001285	ptcd2	93	51.240	Cyprinodon_variegatus
ENSDARG00000035391	ptcd2	94	46.111	ENSDNOG00000008719	PTCD2	94	46.111	Dasypus_novemcinctus
ENSDARG00000035391	ptcd2	97	46.561	ENSDORG00000004921	Ptcd2	97	46.561	Dipodomys_ordii
ENSDARG00000035391	ptcd2	92	43.343	ENSETEG00000016542	PTCD2	90	43.343	Echinops_telfairi
ENSDARG00000035391	ptcd2	97	45.040	ENSEASG00005018038	PTCD2	97	45.040	Equus_asinus_asinus
ENSDARG00000035391	ptcd2	98	44.855	ENSECAG00000007022	PTCD2	97	44.855	Equus_caballus
ENSDARG00000035391	ptcd2	97	42.781	ENSEEUG00000014031	PTCD2	96	42.781	Erinaceus_europaeus
ENSDARG00000035391	ptcd2	100	53.003	ENSELUG00000003584	ptcd2	100	53.003	Esox_lucius
ENSDARG00000035391	ptcd2	81	46.129	ENSFCAG00000045432	PTCD2	72	46.129	Felis_catus
ENSDARG00000035391	ptcd2	85	45.846	ENSFALG00000010299	PTCD2	99	45.846	Ficedula_albicollis
ENSDARG00000035391	ptcd2	92	45.480	ENSFDAG00000018461	PTCD2	92	45.480	Fukomys_damarensis
ENSDARG00000035391	ptcd2	91	52.571	ENSGMOG00000003637	ptcd2	91	52.571	Gadus_morhua
ENSDARG00000035391	ptcd2	92	46.328	ENSGALG00000038260	PTCD2	97	45.676	Gallus_gallus
ENSDARG00000035391	ptcd2	92	52.260	ENSGAGG00000021952	PTCD2	91	52.260	Gopherus_agassizii
ENSDARG00000035391	ptcd2	97	44.118	ENSGGOG00000010695	PTCD2	96	44.118	Gorilla_gorilla
ENSDARG00000035391	ptcd2	100	51.697	ENSHBUG00000009191	ptcd2	98	51.697	Haplochromis_burtoni
ENSDARG00000035391	ptcd2	94	45.556	ENSHGLG00000001234	PTCD2	94	45.556	Heterocephalus_glaber_female
ENSDARG00000035391	ptcd2	94	45.556	ENSHGLG00100015419	PTCD2	94	45.556	Heterocephalus_glaber_male
ENSDARG00000035391	ptcd2	85	54.769	ENSHCOG00000001703	ptcd2	91	53.429	Hippocampus_comes
ENSDARG00000035391	ptcd2	94	54.270	ENSIPUG00000006080	ptcd2	98	53.476	Ictalurus_punctatus
ENSDARG00000035391	ptcd2	97	44.267	ENSSTOG00000006596	PTCD2	97	44.267	Ictidomys_tridecemlineatus
ENSDARG00000035391	ptcd2	93	46.218	ENSJJAG00000024388	Ptcd2	93	46.218	Jaculus_jaculus
ENSDARG00000035391	ptcd2	96	47.411	ENSKMAG00000009329	ptcd2	96	47.411	Kryptolebias_marmoratus
ENSDARG00000035391	ptcd2	100	50.392	ENSLBEG00000024871	ptcd2	98	50.392	Labrus_bergylta
ENSDARG00000035391	ptcd2	100	51.169	ENSLOCG00000011122	ptcd2	100	51.169	Lepisosteus_oculatus
ENSDARG00000035391	ptcd2	72	50.909	ENSLAFG00000004115	PTCD2	98	48.684	Loxodonta_africana
ENSDARG00000035391	ptcd2	99	44.503	ENSMFAG00000031516	PTCD2	98	44.503	Macaca_fascicularis
ENSDARG00000035391	ptcd2	99	44.503	ENSMNEG00000007537	PTCD2	99	44.503	Macaca_nemestrina
ENSDARG00000035391	ptcd2	99	44.503	ENSMLEG00000031093	PTCD2	98	44.503	Mandrillus_leucophaeus
ENSDARG00000035391	ptcd2	100	52.219	ENSMAMG00000018529	ptcd2	100	52.219	Mastacembelus_armatus
ENSDARG00000035391	ptcd2	100	51.958	ENSMZEG00005003625	ptcd2	98	51.958	Maylandia_zebra
ENSDARG00000035391	ptcd2	91	45.690	ENSMGAG00000005033	PTCD2	99	45.690	Meleagris_gallopavo
ENSDARG00000035391	ptcd2	94	43.213	ENSMICG00000004535	PTCD2	93	43.213	Microcebus_murinus
ENSDARG00000035391	ptcd2	93	46.629	ENSMOCG00000019985	Ptcd2	93	46.629	Microtus_ochrogaster
ENSDARG00000035391	ptcd2	97	46.933	ENSMODG00000001695	PTCD2	97	46.933	Monodelphis_domestica
ENSDARG00000035391	ptcd2	100	50.131	ENSMALG00000022372	ptcd2	100	50.131	Monopterus_albus
ENSDARG00000035391	ptcd2	93	46.629	MGP_CAROLIEiJ_G0018829	Ptcd2	93	46.629	Mus_caroli
ENSDARG00000035391	ptcd2	93	45.787	ENSMUSG00000021650	Ptcd2	93	45.787	Mus_musculus
ENSDARG00000035391	ptcd2	93	46.910	MGP_PahariEiJ_G0015904	Ptcd2	93	46.910	Mus_pahari
ENSDARG00000035391	ptcd2	93	46.629	MGP_SPRETEiJ_G0019711	Ptcd2	93	46.629	Mus_spretus
ENSDARG00000035391	ptcd2	97	45.576	ENSMPUG00000014401	PTCD2	97	45.576	Mustela_putorius_furo
ENSDARG00000035391	ptcd2	92	45.455	ENSMLUG00000007374	PTCD2	96	43.979	Myotis_lucifugus
ENSDARG00000035391	ptcd2	96	44.624	ENSNGAG00000005027	Ptcd2	96	44.624	Nannospalax_galili
ENSDARG00000035391	ptcd2	100	51.958	ENSNBRG00000008174	ptcd2	100	51.958	Neolamprologus_brichardi
ENSDARG00000035391	ptcd2	86	50.606	ENSNBRG00000000092	-	100	50.606	Neolamprologus_brichardi
ENSDARG00000035391	ptcd2	99	44.764	ENSNLEG00000004516	PTCD2	98	44.764	Nomascus_leucogenys
ENSDARG00000035391	ptcd2	93	46.218	ENSOPRG00000007290	PTCD2	91	46.218	Ochotona_princeps
ENSDARG00000035391	ptcd2	92	46.610	ENSODEG00000016417	PTCD2	92	46.610	Octodon_degus
ENSDARG00000035391	ptcd2	86	52.744	ENSONIG00000011269	ptcd2	96	52.744	Oreochromis_niloticus
ENSDARG00000035391	ptcd2	95	45.628	ENSOCUG00000007970	PTCD2	97	45.455	Oryctolagus_cuniculus
ENSDARG00000035391	ptcd2	94	51.524	ENSORLG00000003851	ptcd2	92	51.524	Oryzias_latipes
ENSDARG00000035391	ptcd2	94	50.416	ENSORLG00020009823	ptcd2	94	50.416	Oryzias_latipes_hni
ENSDARG00000035391	ptcd2	91	52.000	ENSORLG00015016777	ptcd2	99	52.000	Oryzias_latipes_hsok
ENSDARG00000035391	ptcd2	90	51.734	ENSOMEG00000012396	ptcd2	84	51.734	Oryzias_melastigma
ENSDARG00000035391	ptcd2	94	44.722	ENSOGAG00000008390	PTCD2	93	44.722	Otolemur_garnettii
ENSDARG00000035391	ptcd2	97	43.883	ENSOARG00000005087	PTCD2	96	43.883	Ovis_aries
ENSDARG00000035391	ptcd2	97	44.118	ENSPPAG00000028480	PTCD2	96	44.118	Pan_paniscus
ENSDARG00000035391	ptcd2	94	45.278	ENSPTRG00000016968	PTCD2	92	45.278	Pan_troglodytes
ENSDARG00000035391	ptcd2	90	45.376	ENSPANG00000006611	PTCD2	89	45.376	Papio_anubis
ENSDARG00000035391	ptcd2	100	49.610	ENSPKIG00000019896	ptcd2	100	49.610	Paramormyrops_kingsleyae
ENSDARG00000035391	ptcd2	80	51.780	ENSPSIG00000014559	PTCD2	96	51.780	Pelodiscus_sinensis
ENSDARG00000035391	ptcd2	96	44.744	ENSPEMG00000000884	Ptcd2	97	44.744	Peromyscus_maniculatus_bairdii
ENSDARG00000035391	ptcd2	98	45.238	ENSPCIG00000029047	PTCD2	98	45.238	Phascolarctos_cinereus
ENSDARG00000035391	ptcd2	88	51.929	ENSPLAG00000010456	ptcd2	93	51.240	Poecilia_latipinna
ENSDARG00000035391	ptcd2	95	51.781	ENSPREG00000021797	ptcd2	92	51.781	Poecilia_reticulata
ENSDARG00000035391	ptcd2	99	39.529	ENSPPYG00000015543	PTCD2	98	39.529	Pongo_abelii
ENSDARG00000035391	ptcd2	75	43.007	ENSPCAG00000006806	PTCD2	91	43.007	Procavia_capensis
ENSDARG00000035391	ptcd2	97	44.118	ENSPVAG00000010935	PTCD2	96	44.118	Pteropus_vampyrus
ENSDARG00000035391	ptcd2	100	51.697	ENSPNYG00000003122	ptcd2	98	51.697	Pundamilia_nyererei
ENSDARG00000035391	ptcd2	100	61.140	ENSPNAG00000021490	ptcd2	100	61.140	Pygocentrus_nattereri
ENSDARG00000035391	ptcd2	93	47.191	ENSRNOG00000028403	Ptcd2	93	47.191	Rattus_norvegicus
ENSDARG00000035391	ptcd2	99	40.052	ENSRBIG00000032929	PTCD2	98	40.052	Rhinopithecus_bieti
ENSDARG00000035391	ptcd2	99	44.503	ENSRROG00000000080	PTCD2	99	44.503	Rhinopithecus_roxellana
ENSDARG00000035391	ptcd2	97	44.533	ENSSBOG00000018911	PTCD2	97	44.533	Saimiri_boliviensis_boliviensis
ENSDARG00000035391	ptcd2	98	42.147	ENSSHAG00000003833	PTCD2	98	42.147	Sarcophilus_harrisii
ENSDARG00000035391	ptcd2	92	50.568	ENSSFOG00015015415	ptcd2	92	50.568	Scleropages_formosus
ENSDARG00000035391	ptcd2	98	51.337	ENSSMAG00000010350	ptcd2	96	51.337	Scophthalmus_maximus
ENSDARG00000035391	ptcd2	95	54.545	ENSSDUG00000008142	ptcd2	91	54.545	Seriola_dumerili
ENSDARG00000035391	ptcd2	95	53.994	ENSSLDG00000015284	ptcd2	95	53.994	Seriola_lalandi_dorsalis
ENSDARG00000035391	ptcd2	58	48.230	ENSSARG00000004983	PTCD2	95	41.806	Sorex_araneus
ENSDARG00000035391	ptcd2	92	46.045	ENSSPUG00000000176	PTCD2	89	46.045	Sphenodon_punctatus
ENSDARG00000035391	ptcd2	99	51.969	ENSSPAG00000008591	ptcd2	98	51.969	Stegastes_partitus
ENSDARG00000035391	ptcd2	95	44.565	ENSSSCG00000016975	PTCD2	86	44.565	Sus_scrofa
ENSDARG00000035391	ptcd2	90	46.974	ENSTGUG00000005705	PTCD2	100	46.974	Taeniopygia_guttata
ENSDARG00000035391	ptcd2	98	42.971	ENSTBEG00000016559	PTCD2	97	42.971	Tupaia_belangeri
ENSDARG00000035391	ptcd2	94	45.682	ENSTTRG00000011851	PTCD2	92	45.682	Tursiops_truncatus
ENSDARG00000035391	ptcd2	97	45.040	ENSUAMG00000007583	PTCD2	87	45.040	Ursus_americanus
ENSDARG00000035391	ptcd2	97	45.040	ENSUMAG00000007666	PTCD2	97	45.040	Ursus_maritimus
ENSDARG00000035391	ptcd2	97	42.933	ENSVPAG00000009597	PTCD2	96	42.933	Vicugna_pacos
ENSDARG00000035391	ptcd2	92	45.455	ENSVVUG00000007299	-	97	44.772	Vulpes_vulpes
ENSDARG00000035391	ptcd2	100	44.301	ENSXETG00000031652	PTCD2	100	44.301	Xenopus_tropicalis
ENSDARG00000035391	ptcd2	88	51.335	ENSXMAG00000005940	ptcd2	86	50.689	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0050684	regulation of mRNA processing	-	IEA	Process
GO:0050684	regulation of mRNA processing	-	ISS	Process