EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000035427 (Gene tree)
Gene ID: 394040
Gene Symbol: surf6
Alias: surf6l|zgc:64008
Full Name: surfeit 6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6007 bases
Position: chr5:33275150-33281156
Accession: ZDB-GENE-040426-1333
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000051343	SURF6	PF04935.12	4.8e-39	1	1
ENSDARP00000121048	SURF6	PF04935.12	4.8e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138116	-	1500	-	ENSDARP00000121048	362 (aa)	-	Q6DRK9
ENSDART00000051344	-	1378	XM_005171804	ENSDARP00000051343	362 (aa)	XP_005171861	Q6DRK9

Gene Model

Click here to download ENSDARG00000035427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000035427's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000035427	surf6	100	100.000	ENSDARG00000023645	kyat1	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000035427	surf6	100	40.751	ENSG00000148296	SURF6	99	40.000	Homo_sapiens
ENSDARG00000035427	surf6	99	53.699	ENSAPOG00000021015	surf6	99	53.699	Acanthochromis_polyacanthus
ENSDARG00000035427	surf6	100	40.633	ENSAMEG00000011733	SURF6	100	38.802	Ailuropoda_melanoleuca
ENSDARG00000035427	surf6	99	52.603	ENSAOCG00000015839	surf6	99	52.877	Amphiprion_ocellaris
ENSDARG00000035427	surf6	99	52.329	ENSAPEG00000022442	surf6	99	52.603	Amphiprion_percula
ENSDARG00000035427	surf6	99	53.495	ENSATEG00000012640	surf6	99	53.495	Anabas_testudineus
ENSDARG00000035427	surf6	90	41.329	ENSAPLG00000005069	SURF6	88	45.397	Anas_platyrhynchos
ENSDARG00000035427	surf6	100	40.270	ENSANAG00000021046	SURF6	99	39.946	Aotus_nancymaae
ENSDARG00000035427	surf6	99	51.752	ENSACLG00000027819	surf6	99	51.752	Astatotilapia_calliptera
ENSDARG00000035427	surf6	99	63.130	ENSAMXG00000012546	surf6	99	64.191	Astyanax_mexicanus
ENSDARG00000035427	surf6	100	39.782	ENSBTAG00000011554	SURF6	99	39.782	Bos_taurus
ENSDARG00000035427	surf6	100	42.192	ENSCJAG00000017951	SURF6	99	39.189	Callithrix_jacchus
ENSDARG00000035427	surf6	100	39.510	ENSCAFG00000019758	-	99	40.379	Canis_familiaris
ENSDARG00000035427	surf6	100	35.946	ENSCAFG00000005159	-	99	35.946	Canis_familiaris
ENSDARG00000035427	surf6	100	39.510	ENSCAFG00020001156	SURF6	99	40.379	Canis_lupus_dingo
ENSDARG00000035427	surf6	100	39.071	ENSCHIG00000025220	SURF6	99	39.071	Capra_hircus
ENSDARG00000035427	surf6	100	42.350	ENSTSYG00000008431	SURF6	99	42.935	Carlito_syrichta
ENSDARG00000035427	surf6	75	44.161	ENSCAPG00000010696	SURF6	82	44.891	Cavia_aperea
ENSDARG00000035427	surf6	100	41.444	ENSCPOG00000030454	SURF6	99	42.473	Cavia_porcellus
ENSDARG00000035427	surf6	100	41.129	ENSCATG00000042004	SURF6	99	41.176	Cercocebus_atys
ENSDARG00000035427	surf6	100	42.742	ENSCLAG00000004429	SURF6	89	42.588	Chinchilla_lanigera
ENSDARG00000035427	surf6	100	40.431	ENSCSAG00000018888	-	99	40.751	Chlorocebus_sabaeus
ENSDARG00000035427	surf6	100	38.275	ENSCSAG00000015203	-	99	37.903	Chlorocebus_sabaeus
ENSDARG00000035427	surf6	100	47.709	ENSCPBG00000021169	SURF6	99	46.774	Chrysemys_picta_bellii
ENSDARG00000035427	surf6	100	40.599	ENSCGRG00000017035	Surf6	99	40.054	Cricetulus_griseus_crigri
ENSDARG00000035427	surf6	99	49.025	ENSCSEG00000015172	surf6	99	49.722	Cynoglossus_semilaevis
ENSDARG00000035427	surf6	80	54.027	ENSCVAG00000015730	surf6	90	54.362	Cyprinodon_variegatus
ENSDARG00000035427	surf6	100	41.192	ENSDNOG00000049519	SURF6	96	41.144	Dasypus_novemcinctus
ENSDARG00000035427	surf6	100	40.548	ENSDORG00000010761	Surf6	99	40.548	Dipodomys_ordii
ENSDARG00000035427	surf6	82	40.268	ENSETEG00000004239	SURF6	76	44.788	Echinops_telfairi
ENSDARG00000035427	surf6	53	42.105	ENSEBUG00000001547	surf6	62	42.105	Eptatretus_burgeri
ENSDARG00000035427	surf6	80	47.119	ENSEEUG00000011071	-	98	42.034	Erinaceus_europaeus
ENSDARG00000035427	surf6	100	37.500	ENSFCAG00000040914	SURF6	99	37.366	Felis_catus
ENSDARG00000035427	surf6	100	41.129	ENSFALG00000001495	SURF6	99	43.200	Ficedula_albicollis
ENSDARG00000035427	surf6	86	41.479	ENSFDAG00000007052	SURF6	78	45.882	Fukomys_damarensis
ENSDARG00000035427	surf6	99	53.005	ENSFHEG00000002290	surf6	99	53.825	Fundulus_heteroclitus
ENSDARG00000035427	surf6	100	45.989	ENSGALG00000038413	SURF6	100	44.032	Gallus_gallus
ENSDARG00000035427	surf6	99	53.699	ENSGAFG00000013618	surf6	99	52.747	Gambusia_affinis
ENSDARG00000035427	surf6	100	44.186	ENSGAGG00000010286	SURF6	99	43.041	Gopherus_agassizii
ENSDARG00000035427	surf6	100	40.751	ENSGGOG00000014426	SURF6	99	40.000	Gorilla_gorilla
ENSDARG00000035427	surf6	99	51.752	ENSHBUG00000008764	surf6	99	51.752	Haplochromis_burtoni
ENSDARG00000035427	surf6	100	40.318	ENSHGLG00000013027	SURF6	99	42.857	Heterocephalus_glaber_female
ENSDARG00000035427	surf6	80	44.369	ENSHGLG00100015654	SURF6	72	44.369	Heterocephalus_glaber_male
ENSDARG00000035427	surf6	99	47.568	ENSHCOG00000001639	surf6	99	49.591	Hippocampus_comes
ENSDARG00000035427	surf6	100	62.295	ENSIPUG00000008066	surf6	100	62.295	Ictalurus_punctatus
ENSDARG00000035427	surf6	100	41.734	ENSSTOG00000020164	SURF6	99	41.129	Ictidomys_tridecemlineatus
ENSDARG00000035427	surf6	99	51.524	ENSKMAG00000009936	surf6	100	51.934	Kryptolebias_marmoratus
ENSDARG00000035427	surf6	98	51.253	ENSLBEG00000024311	surf6	99	52.066	Labrus_bergylta
ENSDARG00000035427	surf6	99	45.251	ENSLACG00000013322	SURF6	99	46.648	Latimeria_chalumnae
ENSDARG00000035427	surf6	99	52.762	ENSLOCG00000004072	surf6	99	53.315	Lepisosteus_oculatus
ENSDARG00000035427	surf6	100	40.420	ENSLAFG00000026419	SURF6	99	42.779	Loxodonta_africana
ENSDARG00000035427	surf6	80	41.297	ENSMMUG00000022339	-	85	42.034	Macaca_mulatta
ENSDARG00000035427	surf6	100	40.701	ENSMNEG00000033787	SURF6	99	41.019	Macaca_nemestrina
ENSDARG00000035427	surf6	100	40.701	ENSMLEG00000028750	SURF6	99	40.909	Mandrillus_leucophaeus
ENSDARG00000035427	surf6	99	51.762	ENSMAMG00000018269	surf6	99	52.861	Mastacembelus_armatus
ENSDARG00000035427	surf6	99	51.752	ENSMZEG00005003188	surf6	99	51.752	Maylandia_zebra
ENSDARG00000035427	surf6	100	45.989	ENSMGAG00000006371	SURF6	100	43.883	Meleagris_gallopavo
ENSDARG00000035427	surf6	100	40.921	ENSMAUG00000020676	Surf6	99	42.276	Mesocricetus_auratus
ENSDARG00000035427	surf6	100	40.267	ENSMICG00000046077	SURF6	99	40.691	Microcebus_murinus
ENSDARG00000035427	surf6	100	43.733	ENSMOCG00000011956	Surf6	99	42.933	Microtus_ochrogaster
ENSDARG00000035427	surf6	100	44.920	ENSMODG00000012744	SURF6	99	45.093	Monodelphis_domestica
ENSDARG00000035427	surf6	99	52.575	ENSMALG00000012310	surf6	99	52.575	Monopterus_albus
ENSDARG00000035427	surf6	100	40.761	MGP_CAROLIEiJ_G0023325	Surf6	99	40.761	Mus_caroli
ENSDARG00000035427	surf6	100	40.650	ENSMUSG00000036160	Surf6	99	40.650	Mus_musculus
ENSDARG00000035427	surf6	100	41.257	MGP_PahariEiJ_G0024782	Surf6	99	41.257	Mus_pahari
ENSDARG00000035427	surf6	100	40.872	MGP_SPRETEiJ_G0024242	Surf6	99	40.872	Mus_spretus
ENSDARG00000035427	surf6	99	36.911	ENSMPUG00000012416	SURF6	94	37.566	Mustela_putorius_furo
ENSDARG00000035427	surf6	100	40.217	ENSNGAG00000015358	Surf6	99	40.217	Nannospalax_galili
ENSDARG00000035427	surf6	99	52.561	ENSNBRG00000007805	surf6	99	52.022	Neolamprologus_brichardi
ENSDARG00000035427	surf6	100	40.162	ENSNLEG00000013079	SURF6	99	39.678	Nomascus_leucogenys
ENSDARG00000035427	surf6	73	47.148	ENSMEUG00000006545	-	70	43.396	Notamacropus_eugenii
ENSDARG00000035427	surf6	100	41.484	ENSODEG00000015789	SURF6	99	41.484	Octodon_degus
ENSDARG00000035427	surf6	99	50.541	ENSONIG00000011294	surf6	98	52.033	Oreochromis_niloticus
ENSDARG00000035427	surf6	100	36.911	ENSOANG00000011709	-	99	36.170	Ornithorhynchus_anatinus
ENSDARG00000035427	surf6	99	51.752	ENSORLG00000003980	surf6	86	52.291	Oryzias_latipes
ENSDARG00000035427	surf6	99	51.491	ENSORLG00020009339	surf6	86	52.022	Oryzias_latipes_hni
ENSDARG00000035427	surf6	99	51.762	ENSORLG00015016272	surf6	86	52.304	Oryzias_latipes_hsok
ENSDARG00000035427	surf6	99	52.575	ENSOMEG00000011772	surf6	86	53.100	Oryzias_melastigma
ENSDARG00000035427	surf6	73	34.962	ENSOARG00000003711	SURF6	80	33.929	Ovis_aries
ENSDARG00000035427	surf6	100	40.701	ENSPPAG00000032305	SURF6	99	40.642	Pan_paniscus
ENSDARG00000035427	surf6	100	38.587	ENSPPRG00000003090	SURF6	99	38.482	Panthera_pardus
ENSDARG00000035427	surf6	100	40.701	ENSPTRG00000021514	SURF6	99	40.642	Pan_troglodytes
ENSDARG00000035427	surf6	100	40.970	ENSPANG00000026036	SURF6	99	40.642	Papio_anubis
ENSDARG00000035427	surf6	99	53.406	ENSPKIG00000025080	surf6	89	53.406	Paramormyrops_kingsleyae
ENSDARG00000035427	surf6	100	42.933	ENSPSIG00000011771	SURF6	99	44.032	Pelodiscus_sinensis
ENSDARG00000035427	surf6	71	58.527	ENSPMGG00000004798	surf6	95	54.849	Periophthalmus_magnuspinnatus
ENSDARG00000035427	surf6	100	42.120	ENSPEMG00000012589	Surf6	99	43.478	Peromyscus_maniculatus_bairdii
ENSDARG00000035427	surf6	100	48.276	ENSPCIG00000017358	SURF6	99	45.144	Phascolarctos_cinereus
ENSDARG00000035427	surf6	99	51.667	ENSPLAG00000021874	surf6	99	53.425	Poecilia_latipinna
ENSDARG00000035427	surf6	83	54.125	ENSPMEG00000009994	surf6	86	55.263	Poecilia_mexicana
ENSDARG00000035427	surf6	99	51.667	ENSPMEG00000009276	surf6	99	52.632	Poecilia_mexicana
ENSDARG00000035427	surf6	80	53.952	ENSPREG00000021969	surf6	92	55.137	Poecilia_reticulata
ENSDARG00000035427	surf6	100	39.892	ENSPPYG00000019728	SURF6	99	39.410	Pongo_abelii
ENSDARG00000035427	surf6	66	40.249	ENSPCAG00000002906	SURF6	75	40.664	Procavia_capensis
ENSDARG00000035427	surf6	100	40.162	ENSPCOG00000015707	SURF6	99	39.628	Propithecus_coquereli
ENSDARG00000035427	surf6	99	52.022	ENSPNYG00000003445	surf6	99	52.022	Pundamilia_nyererei
ENSDARG00000035427	surf6	100	62.264	ENSPNAG00000006939	surf6	99	63.881	Pygocentrus_nattereri
ENSDARG00000035427	surf6	100	42.547	ENSRNOG00000005031	Surf6	99	41.144	Rattus_norvegicus
ENSDARG00000035427	surf6	100	40.970	ENSRBIG00000028268	SURF6	99	41.287	Rhinopithecus_bieti
ENSDARG00000035427	surf6	100	40.970	ENSRROG00000012667	SURF6	99	41.287	Rhinopithecus_roxellana
ENSDARG00000035427	surf6	100	35.135	ENSSBOG00000024264	-	99	35.135	Saimiri_boliviensis_boliviensis
ENSDARG00000035427	surf6	100	42.782	ENSSHAG00000003742	SURF6	99	42.857	Sarcophilus_harrisii
ENSDARG00000035427	surf6	100	56.510	ENSSFOG00015016640	surf6	97	56.771	Scleropages_formosus
ENSDARG00000035427	surf6	99	52.055	ENSSMAG00000009846	surf6	99	52.446	Scophthalmus_maximus
ENSDARG00000035427	surf6	99	52.486	ENSSDUG00000007947	surf6	99	52.877	Seriola_dumerili
ENSDARG00000035427	surf6	99	52.022	ENSSLDG00000015027	surf6	99	53.743	Seriola_lalandi_dorsalis
ENSDARG00000035427	surf6	99	53.134	ENSSPAG00000005916	surf6	99	54.348	Stegastes_partitus
ENSDARG00000035427	surf6	100	41.425	ENSTGUG00000005438	-	100	44.503	Taeniopygia_guttata
ENSDARG00000035427	surf6	99	49.598	ENSTRUG00000023872	surf6	99	49.596	Takifugu_rubripes
ENSDARG00000035427	surf6	99	48.370	ENSTNIG00000007503	surf6	99	50.833	Tetraodon_nigroviridis
ENSDARG00000035427	surf6	100	39.510	ENSVVUG00000027289	SURF6	99	40.379	Vulpes_vulpes
ENSDARG00000035427	surf6	100	48.767	ENSXETG00000005018	surf6	99	45.405	Xenopus_tropicalis
ENSDARG00000035427	surf6	99	53.571	ENSXCOG00000001322	surf6	99	54.945	Xiphophorus_couchianus
ENSDARG00000035427	surf6	99	55.068	ENSXMAG00000024608	surf6	99	55.068	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0007507	heart development	19652097.	IMP	Process
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process
GO:0042274	ribosomal small subunit biogenesis	21873635.	IBA	Process