EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000035913 (Gene tree)
Gene ID: 368235
Gene Symbol: yars
Alias: TyrRS|cb204|wu:fk52b08
Full Name: tyrosyl-tRNA synthetase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10568 bases
Position: chr19:30884706-30895273
Accession: ZDB-GENE-030425-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000052125	tRNA_bind	PF01588.20	3.2e-31	1	1
ENSDARP00000144984	tRNA_bind	PF01588.20	3.2e-31	1	1
ENSDARP00000052125	tRNA-synt_1b	PF00579.25	1e-73	1	1
ENSDARP00000144984	tRNA-synt_1b	PF00579.25	1e-73	1	1
ENSDARP00000118032	tRNA-synt_1b	PF00579.25	1.3e-65	1	1
ENSDARP00000112715	tRNA-synt_1b	PF00579.25	1.4e-62	1	1
ENSDARP00000120610	tRNA-synt_1b	PF00579.25	5.7e-54	1	1
ENSDARP00000113450	tRNA-synt_1b	PF00579.25	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143394	-	753	-	ENSDARP00000120610	228 (aa)	-	Q1LWM1
ENSDART00000145423	-	758	-	-	- (aa)	-	-
ENSDART00000139599	-	309	-	ENSDARP00000113450	87 (aa)	-	Q1LWM0
ENSDART00000135484	-	898	-	ENSDARP00000118032	286 (aa)	-	Q1LWM3
ENSDART00000052126	-	2445	XM_005159598	ENSDARP00000052125	529 (aa)	XP_005159655	A0A0R4I9C1
ENSDART00000137884	-	608	-	-	- (aa)	-	-
ENSDART00000183224	-	2463	-	ENSDARP00000144984	529 (aa)	-	A0A0R4I9C1
ENSDART00000140603	-	838	-	ENSDARP00000112715	251 (aa)	-	Q1LWM2

Gene Model

Click here to download ENSDARG00000035913's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000035913's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000035913	yars	100	90.805	ENSG00000134684	YARS	100	81.853	Homo_sapiens
ENSDARG00000035913	yars	100	93.421	ENSAPOG00000020788	yars	100	84.615	Acanthochromis_polyacanthus
ENSDARG00000035913	yars	100	91.235	ENSAMEG00000007476	YARS	100	82.420	Ailuropoda_melanoleuca
ENSDARG00000035913	yars	100	94.298	ENSACIG00000017504	yars	100	85.822	Amphilophus_citrinellus
ENSDARG00000035913	yars	100	94.298	ENSAOCG00000009987	yars	100	85.019	Amphiprion_ocellaris
ENSDARG00000035913	yars	100	94.298	ENSAPEG00000001273	yars	100	85.019	Amphiprion_percula
ENSDARG00000035913	yars	100	94.737	ENSATEG00000005301	yars	100	84.831	Anabas_testudineus
ENSDARG00000035913	yars	95	89.815	ENSAPLG00000005739	YARS	98	75.435	Anas_platyrhynchos
ENSDARG00000035913	yars	100	88.446	ENSACAG00000003568	YARS	99	78.220	Anolis_carolinensis
ENSDARG00000035913	yars	100	91.954	ENSANAG00000034533	YARS	100	82.420	Aotus_nancymaae
ENSDARG00000035913	yars	100	92.982	ENSACLG00000004618	yars	100	86.011	Astatotilapia_calliptera
ENSDARG00000035913	yars	100	95.614	ENSAMXG00000010993	yars	100	90.000	Astyanax_mexicanus
ENSDARG00000035913	yars	100	93.103	ENSBTAG00000018065	YARS	100	81.664	Bos_taurus
ENSDARG00000035913	yars	100	91.954	ENSCJAG00000001037	YARS	100	82.231	Callithrix_jacchus
ENSDARG00000035913	yars	100	91.954	ENSCAFG00000010481	YARS	94	81.853	Canis_familiaris
ENSDARG00000035913	yars	100	91.954	ENSCAFG00020025379	YARS	100	81.698	Canis_lupus_dingo
ENSDARG00000035913	yars	100	93.103	ENSCHIG00000014340	YARS	100	81.853	Capra_hircus
ENSDARG00000035913	yars	100	90.438	ENSTSYG00000005019	YARS	100	81.664	Carlito_syrichta
ENSDARG00000035913	yars	78	95.588	ENSCAPG00000008627	YARS	100	57.806	Cavia_aperea
ENSDARG00000035913	yars	100	90.805	ENSCPOG00000009614	YARS	94	81.096	Cavia_porcellus
ENSDARG00000035913	yars	100	91.954	ENSCCAG00000036757	YARS	98	82.231	Cebus_capucinus
ENSDARG00000035913	yars	100	90.438	ENSCATG00000044394	YARS	100	81.853	Cercocebus_atys
ENSDARG00000035913	yars	100	90.837	ENSCLAG00000008977	YARS	93	81.285	Chinchilla_lanigera
ENSDARG00000035913	yars	100	90.040	ENSCSAG00000001062	YARS	100	81.853	Chlorocebus_sabaeus
ENSDARG00000035913	yars	78	95.588	ENSCHOG00000003939	YARS	100	72.745	Choloepus_hoffmanni
ENSDARG00000035913	yars	100	90.351	ENSCPBG00000010998	YARS	100	81.664	Chrysemys_picta_bellii
ENSDARG00000035913	yars	99	87.168	ENSCING00000005113	-	99	71.563	Ciona_intestinalis
ENSDARG00000035913	yars	98	85.714	ENSCSAVG00000003706	-	99	67.742	Ciona_savignyi
ENSDARG00000035913	yars	100	90.040	ENSCANG00000038285	YARS	100	81.474	Colobus_angolensis_palliatus
ENSDARG00000035913	yars	100	91.954	ENSCGRG00001010863	Yars	100	77.694	Cricetulus_griseus_chok1gshd
ENSDARG00000035913	yars	100	91.954	ENSCGRG00000007526	Yars	94	82.042	Cricetulus_griseus_crigri
ENSDARG00000035913	yars	100	92.982	ENSCSEG00000009643	yars	100	84.688	Cynoglossus_semilaevis
ENSDARG00000035913	yars	100	93.421	ENSCVAG00000016583	yars	100	85.633	Cyprinodon_variegatus
ENSDARG00000035913	yars	100	89.641	ENSDNOG00000000536	YARS	100	81.096	Dasypus_novemcinctus
ENSDARG00000035913	yars	100	91.954	ENSDORG00000011871	Yars	100	82.609	Dipodomys_ordii
ENSDARG00000035913	yars	98	85.714	FBgn0027080	TyrRS	99	67.552	Drosophila_melanogaster
ENSDARG00000035913	yars	100	89.655	ENSETEG00000000215	YARS	87	88.889	Echinops_telfairi
ENSDARG00000035913	yars	98	81.250	ENSEBUG00000004750	yars	100	65.720	Eptatretus_burgeri
ENSDARG00000035913	yars	98	92.377	ENSEASG00005011762	YARS	93	81.474	Equus_asinus_asinus
ENSDARG00000035913	yars	98	91.928	ENSECAG00000010015	YARS	68	81.474	Equus_caballus
ENSDARG00000035913	yars	100	89.655	ENSEEUG00000005992	-	88	64.304	Erinaceus_europaeus
ENSDARG00000035913	yars	100	92.829	ENSELUG00000017171	yars	100	87.524	Esox_lucius
ENSDARG00000035913	yars	100	91.228	ENSFCAG00000000704	YARS	99	91.031	Felis_catus
ENSDARG00000035913	yars	97	90.947	ENSFALG00000000592	YARS	92	81.644	Ficedula_albicollis
ENSDARG00000035913	yars	100	89.655	ENSFDAG00000006620	YARS	94	81.096	Fukomys_damarensis
ENSDARG00000035913	yars	100	93.421	ENSFHEG00000022444	yars	100	84.774	Fundulus_heteroclitus
ENSDARG00000035913	yars	92	96.172	ENSGMOG00000006555	yars	100	81.765	Gadus_morhua
ENSDARG00000035913	yars	98	90.204	ENSGALG00000003563	YARS	97	81.071	Gallus_gallus
ENSDARG00000035913	yars	80	87.143	ENSGAFG00000018620	yars	82	89.677	Gambusia_affinis
ENSDARG00000035913	yars	100	92.829	ENSGACG00000008516	yars	100	84.181	Gasterosteus_aculeatus
ENSDARG00000035913	yars	100	89.912	ENSGAGG00000024290	YARS	100	81.853	Gopherus_agassizii
ENSDARG00000035913	yars	100	90.837	ENSGGOG00000014013	YARS	100	82.042	Gorilla_gorilla
ENSDARG00000035913	yars	100	92.982	ENSHBUG00000018909	yars	100	85.047	Haplochromis_burtoni
ENSDARG00000035913	yars	100	89.655	ENSHGLG00000013843	YARS	94	80.340	Heterocephalus_glaber_female
ENSDARG00000035913	yars	70	75.815	ENSHGLG00100020546	-	99	75.815	Heterocephalus_glaber_male
ENSDARG00000035913	yars	100	89.655	ENSHGLG00100002785	-	100	79.395	Heterocephalus_glaber_male
ENSDARG00000035913	yars	100	92.105	ENSHCOG00000006672	yars	100	81.481	Hippocampus_comes
ENSDARG00000035913	yars	100	94.422	ENSIPUG00000021749	yars	99	85.795	Ictalurus_punctatus
ENSDARG00000035913	yars	100	91.954	ENSSTOG00000012031	YARS	94	82.798	Ictidomys_tridecemlineatus
ENSDARG00000035913	yars	100	93.103	ENSJJAG00000013281	Yars	93	81.474	Jaculus_jaculus
ENSDARG00000035913	yars	100	92.982	ENSKMAG00000021752	yars	100	84.586	Kryptolebias_marmoratus
ENSDARG00000035913	yars	100	95.614	ENSLBEG00000024080	yars	100	85.047	Labrus_bergylta
ENSDARG00000035913	yars	100	89.474	ENSLACG00000015577	YARS	100	79.434	Latimeria_chalumnae
ENSDARG00000035913	yars	100	94.298	ENSLOCG00000002165	yars	99	85.795	Lepisosteus_oculatus
ENSDARG00000035913	yars	100	91.954	ENSLAFG00000003786	YARS	96	81.474	Loxodonta_africana
ENSDARG00000035913	yars	100	89.655	ENSMFAG00000040933	YARS	100	76.938	Macaca_fascicularis
ENSDARG00000035913	yars	100	90.438	ENSMMUG00000019746	YARS	100	82.042	Macaca_mulatta
ENSDARG00000035913	yars	100	90.438	ENSMNEG00000031865	YARS	100	76.415	Macaca_nemestrina
ENSDARG00000035913	yars	100	90.438	ENSMLEG00000041315	YARS	100	81.853	Mandrillus_leucophaeus
ENSDARG00000035913	yars	100	95.175	ENSMAMG00000006092	yars	100	86.278	Mastacembelus_armatus
ENSDARG00000035913	yars	100	91.667	ENSMZEG00005011426	yars	100	84.991	Maylandia_zebra
ENSDARG00000035913	yars	99	85.022	ENSMGAG00000005063	YARS	100	79.545	Meleagris_gallopavo
ENSDARG00000035913	yars	94	92.373	ENSMAUG00000021126	Yars	99	82.296	Mesocricetus_auratus
ENSDARG00000035913	yars	100	91.235	ENSMICG00000011204	YARS	100	82.609	Microcebus_murinus
ENSDARG00000035913	yars	100	90.837	ENSMOCG00000011342	Yars	94	82.042	Microtus_ochrogaster
ENSDARG00000035913	yars	100	94.298	ENSMMOG00000021133	yars	100	81.096	Mola_mola
ENSDARG00000035913	yars	100	90.805	ENSMODG00000017404	YARS	100	80.718	Monodelphis_domestica
ENSDARG00000035913	yars	93	94.313	ENSMALG00000003648	yars	96	85.100	Monopterus_albus
ENSDARG00000035913	yars	100	90.837	MGP_CAROLIEiJ_G0026513	Yars	94	82.042	Mus_caroli
ENSDARG00000035913	yars	100	91.954	ENSMUSG00000028811	Yars	94	82.042	Mus_musculus
ENSDARG00000035913	yars	100	90.805	MGP_PahariEiJ_G0028844	Yars	94	80.907	Mus_pahari
ENSDARG00000035913	yars	100	90.805	MGP_SPRETEiJ_G0027493	Yars	94	81.664	Mus_spretus
ENSDARG00000035913	yars	100	91.954	ENSMPUG00000015207	-	79	89.714	Mustela_putorius_furo
ENSDARG00000035913	yars	100	91.954	ENSMLUG00000000759	YARS	100	82.231	Myotis_lucifugus
ENSDARG00000035913	yars	96	89.583	ENSNGAG00000001419	Yars	100	81.569	Nannospalax_galili
ENSDARG00000035913	yars	100	93.421	ENSNBRG00000020413	yars	100	86.389	Neolamprologus_brichardi
ENSDARG00000035913	yars	100	90.837	ENSNLEG00000002922	YARS	100	81.853	Nomascus_leucogenys
ENSDARG00000035913	yars	100	88.506	ENSMEUG00000011824	-	75	84.706	Notamacropus_eugenii
ENSDARG00000035913	yars	100	91.954	ENSOPRG00000003669	YARS	100	76.749	Ochotona_princeps
ENSDARG00000035913	yars	100	91.954	ENSODEG00000005363	YARS	94	80.907	Octodon_degus
ENSDARG00000035913	yars	100	93.421	ENSONIG00000015400	yars	100	85.794	Oreochromis_niloticus
ENSDARG00000035913	yars	100	90.837	ENSOANG00000011779	YARS	100	74.597	Ornithorhynchus_anatinus
ENSDARG00000035913	yars	100	91.954	ENSOCUG00000010007	YARS	100	82.231	Oryctolagus_cuniculus
ENSDARG00000035913	yars	100	93.421	ENSORLG00000013982	yars	96	84.381	Oryzias_latipes
ENSDARG00000035913	yars	100	92.982	ENSORLG00020020750	yars	100	84.746	Oryzias_latipes_hni
ENSDARG00000035913	yars	100	93.421	ENSORLG00015008963	yars	100	84.053	Oryzias_latipes_hsok
ENSDARG00000035913	yars	100	92.544	ENSOMEG00000013016	yars	95	91.453	Oryzias_melastigma
ENSDARG00000035913	yars	100	91.228	ENSOGAG00000007359	YARS	100	81.664	Otolemur_garnettii
ENSDARG00000035913	yars	100	93.103	ENSOARG00000020897	YARS	93	81.664	Ovis_aries
ENSDARG00000035913	yars	100	90.837	ENSPPAG00000035791	YARS	98	82.617	Pan_paniscus
ENSDARG00000035913	yars	100	90.837	ENSPPRG00000023768	YARS	100	82.231	Panthera_pardus
ENSDARG00000035913	yars	100	90.837	ENSPTIG00000003438	YARS	100	82.231	Panthera_tigris_altaica
ENSDARG00000035913	yars	100	90.837	ENSPTRG00000000491	YARS	100	82.042	Pan_troglodytes
ENSDARG00000035913	yars	100	90.438	ENSPANG00000009804	YARS	100	81.853	Papio_anubis
ENSDARG00000035913	yars	100	91.259	ENSPKIG00000024596	yars	100	85.822	Paramormyrops_kingsleyae
ENSDARG00000035913	yars	100	90.040	ENSPSIG00000006945	YARS	100	70.621	Pelodiscus_sinensis
ENSDARG00000035913	yars	100	92.544	ENSPMGG00000022917	yars	100	85.255	Periophthalmus_magnuspinnatus
ENSDARG00000035913	yars	100	90.805	ENSPEMG00000010746	Yars	94	81.664	Peromyscus_maniculatus_bairdii
ENSDARG00000035913	yars	100	90.837	ENSPCIG00000022457	YARS	99	81.250	Phascolarctos_cinereus
ENSDARG00000035913	yars	100	92.982	ENSPFOG00000014808	yars	100	84.211	Poecilia_formosa
ENSDARG00000035913	yars	100	92.982	ENSPLAG00000020075	yars	100	84.398	Poecilia_latipinna
ENSDARG00000035913	yars	100	92.982	ENSPMEG00000002803	yars	100	84.398	Poecilia_mexicana
ENSDARG00000035913	yars	100	92.982	ENSPREG00000018280	yars	100	84.499	Poecilia_reticulata
ENSDARG00000035913	yars	100	89.655	ENSPPYG00000001585	YARS	100	79.887	Pongo_abelii
ENSDARG00000035913	yars	66	90.566	ENSPCAG00000011170	YARS	76	79.104	Procavia_capensis
ENSDARG00000035913	yars	100	90.837	ENSPCOG00000021026	YARS	100	82.042	Propithecus_coquereli
ENSDARG00000035913	yars	100	91.954	ENSPVAG00000010984	YARS	100	81.853	Pteropus_vampyrus
ENSDARG00000035913	yars	100	92.982	ENSPNYG00000000860	yars	100	85.822	Pundamilia_nyererei
ENSDARG00000035913	yars	100	94.298	ENSPNAG00000009622	yars	100	89.414	Pygocentrus_nattereri
ENSDARG00000035913	yars	100	91.954	ENSRNOG00000007213	Yars	94	81.853	Rattus_norvegicus
ENSDARG00000035913	yars	76	71.759	ENSRBIG00000044271	-	85	70.775	Rhinopithecus_bieti
ENSDARG00000035913	yars	100	90.040	ENSRROG00000039913	YARS	100	81.853	Rhinopithecus_roxellana
ENSDARG00000035913	yars	100	91.954	ENSSBOG00000030205	YARS	100	82.042	Saimiri_boliviensis_boliviensis
ENSDARG00000035913	yars	100	90.040	ENSSHAG00000011851	YARS	100	80.718	Sarcophilus_harrisii
ENSDARG00000035913	yars	100	92.829	ENSSFOG00015007179	yars	100	86.767	Scleropages_formosus
ENSDARG00000035913	yars	100	90.351	ENSSMAG00000020736	yars	100	82.231	Scophthalmus_maximus
ENSDARG00000035913	yars	100	95.175	ENSSDUG00000001782	yars	100	86.604	Seriola_dumerili
ENSDARG00000035913	yars	100	95.175	ENSSLDG00000008268	yars	100	86.767	Seriola_lalandi_dorsalis
ENSDARG00000035913	yars	100	90.805	ENSSARG00000012227	-	86	75.458	Sorex_araneus
ENSDARG00000035913	yars	100	89.243	ENSSPUG00000000333	YARS	100	81.664	Sphenodon_punctatus
ENSDARG00000035913	yars	100	92.544	ENSSPAG00000020632	yars	100	80.414	Stegastes_partitus
ENSDARG00000035913	yars	100	93.103	ENSSSCG00000030369	YARS	100	82.231	Sus_scrofa
ENSDARG00000035913	yars	97	91.892	ENSTGUG00000001342	YARS	99	81.453	Taeniopygia_guttata
ENSDARG00000035913	yars	100	92.982	ENSTRUG00000014099	yars	100	84.717	Takifugu_rubripes
ENSDARG00000035913	yars	100	93.860	ENSTNIG00000009237	yars	99	83.902	Tetraodon_nigroviridis
ENSDARG00000035913	yars	92	92.823	ENSTBEG00000014374	YARS	100	73.529	Tupaia_belangeri
ENSDARG00000035913	yars	100	91.954	ENSTTRG00000014987	YARS	100	81.474	Tursiops_truncatus
ENSDARG00000035913	yars	100	91.954	ENSUAMG00000000392	YARS	100	77.694	Ursus_americanus
ENSDARG00000035913	yars	100	91.954	ENSUMAG00000008312	YARS	93	73.458	Ursus_maritimus
ENSDARG00000035913	yars	100	91.954	ENSVPAG00000010958	YARS	100	71.132	Vicugna_pacos
ENSDARG00000035913	yars	100	91.954	ENSVVUG00000015468	YARS	99	82.227	Vulpes_vulpes
ENSDARG00000035913	yars	100	86.207	ENSXETG00000027865	yars	100	76.938	Xenopus_tropicalis
ENSDARG00000035913	yars	100	88.506	ENSXCOG00000001941	yars	88	90.116	Xiphophorus_couchianus
ENSDARG00000035913	yars	100	92.544	ENSXMAG00000016348	yars	81	85.060	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0000049	tRNA binding	-	IEA	Function
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004831	tyrosine-tRNA ligase activity	21873635.	IBA	Function
GO:0004831	tyrosine-tRNA ligase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	28069943.	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0006418	tRNA aminoacylation for protein translation	21873635.	IBA	Process
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0006437	tyrosyl-tRNA aminoacylation	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	25284223.	IMP	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	21873635.	IBA	Component
GO:0017102	methionyl glutamyl tRNA synthetase complex	21873635.	IBA	Component