EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000036386 (Gene tree)
Gene ID: 573001
Gene Symbol: rbm4.1
Alias: rbm4|wu:fc31f07|wu:fc57h11
Full Name: RNA binding motif protein 4.1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 5339 bases
Position: chr7:22801465-22806803
Accession: ZDB-GENE-030131-3902
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000052861	zf-CCHC	PF00098.23	1.8e-07	1	1
ENSDARP00000052861	RRM_5	PF13893.6	1.3e-06	1	1
ENSDARP00000142868	RRM_5	PF13893.6	6.2e-06	1	1
ENSDARP00000142868	RRM_1	PF00076.22	6.5e-35	1	2
ENSDARP00000142868	RRM_1	PF00076.22	6.5e-35	2	2
ENSDARP00000052861	RRM_1	PF00076.22	1.3e-34	1	2
ENSDARP00000052861	RRM_1	PF00076.22	1.3e-34	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000052862	-	1626	XM_021477592	ENSDARP00000052861	419 (aa)	XP_021333267	Q6IQ97
ENSDART00000173633	-	753	XM_009303078	ENSDARP00000142868	175 (aa)	XP_009301353	A0A1D5NSQ1
ENSDART00000148054	-	580	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000036386's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000036386's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000036386	rbm4.1	73	32.099	ENSDARG00000032614	msi2b	84	32.099
ENSDARG00000036386	rbm4.1	79	76.812	ENSDARG00000055080	rbm4.2	100	53.846
ENSDARG00000036386	rbm4.1	73	30.519	ENSDARG00000089302	hnrnpa0a	50	30.519
ENSDARG00000036386	rbm4.1	79	56.522	ENSDARG00000022129	rbm4.3	50	51.136

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000036386	rbm4.1	100	69.811	ENSAPOG00000012353	rbm4.1	100	69.811	Acanthochromis_polyacanthus
ENSDARG00000036386	rbm4.1	79	68.116	ENSAPOG00000012375	-	97	67.376	Acanthochromis_polyacanthus
ENSDARG00000036386	rbm4.1	79	70.290	ENSACIG00000016472	-	86	69.504	Amphilophus_citrinellus
ENSDARG00000036386	rbm4.1	100	69.740	ENSACIG00000016482	rbm4.1	100	70.213	Amphilophus_citrinellus
ENSDARG00000036386	rbm4.1	79	68.841	ENSAOCG00000010907	-	97	68.085	Amphiprion_ocellaris
ENSDARG00000036386	rbm4.1	100	70.283	ENSAOCG00000010915	rbm4.1	100	70.283	Amphiprion_ocellaris
ENSDARG00000036386	rbm4.1	79	68.841	ENSAPEG00000009476	-	88	68.085	Amphiprion_percula
ENSDARG00000036386	rbm4.1	100	70.283	ENSAPEG00000009494	rbm4.1	100	70.283	Amphiprion_percula
ENSDARG00000036386	rbm4.1	81	72.340	ENSATEG00000001912	-	93	72.340	Anabas_testudineus
ENSDARG00000036386	rbm4.1	100	68.706	ENSATEG00000001904	rbm4.1	100	69.176	Anabas_testudineus
ENSDARG00000036386	rbm4.1	100	69.740	ENSACLG00000007722	rbm4.1	100	70.213	Astatotilapia_calliptera
ENSDARG00000036386	rbm4.1	79	71.739	ENSACLG00000007740	-	99	50.721	Astatotilapia_calliptera
ENSDARG00000036386	rbm4.1	84	68.707	ENSAMXG00000032121	rbm4.2	92	68.707	Astyanax_mexicanus
ENSDARG00000036386	rbm4.1	79	92.754	ENSAMXG00000036611	rbm4.1	100	69.834	Astyanax_mexicanus
ENSDARG00000036386	rbm4.1	79	50.000	ENSCPBG00000023666	-	92	50.000	Chrysemys_picta_bellii
ENSDARG00000036386	rbm4.1	79	72.464	ENSCSEG00000007739	-	99	72.464	Cynoglossus_semilaevis
ENSDARG00000036386	rbm4.1	99	51.429	ENSCSEG00000014359	-	99	51.435	Cynoglossus_semilaevis
ENSDARG00000036386	rbm4.1	100	61.137	ENSCSEG00000014365	rbm4.1	100	60.664	Cynoglossus_semilaevis
ENSDARG00000036386	rbm4.1	100	64.706	ENSCVAG00000019349	rbm4.1	100	64.720	Cyprinodon_variegatus
ENSDARG00000036386	rbm4.1	79	59.286	ENSEBUG00000007174	-	97	55.747	Eptatretus_burgeri
ENSDARG00000036386	rbm4.1	78	60.993	ENSEBUG00000008142	-	50	61.326	Eptatretus_burgeri
ENSDARG00000036386	rbm4.1	100	70.991	ENSELUG00000013205	rbm4.1	100	71.529	Esox_lucius
ENSDARG00000036386	rbm4.1	79	68.116	ENSFHEG00000003483	-	92	67.857	Fundulus_heteroclitus
ENSDARG00000036386	rbm4.1	100	65.581	ENSFHEG00000022926	rbm4.1	100	64.637	Fundulus_heteroclitus
ENSDARG00000036386	rbm4.1	79	73.188	ENSGMOG00000007455	-	99	49.543	Gadus_morhua
ENSDARG00000036386	rbm4.1	100	60.233	ENSGMOG00000007464	rbm4.1	100	61.806	Gadus_morhua
ENSDARG00000036386	rbm4.1	79	72.464	ENSGAFG00000019301	-	91	72.464	Gambusia_affinis
ENSDARG00000036386	rbm4.1	100	65.647	ENSGAFG00000019302	rbm4.1	100	64.706	Gambusia_affinis
ENSDARG00000036386	rbm4.1	79	68.841	ENSGACG00000000821	-	99	49.883	Gasterosteus_aculeatus
ENSDARG00000036386	rbm4.1	100	65.258	ENSGACG00000000822	rbm4.1	100	65.258	Gasterosteus_aculeatus
ENSDARG00000036386	rbm4.1	81	48.905	ENSGAGG00000014558	-	93	47.945	Gopherus_agassizii
ENSDARG00000036386	rbm4.1	88	66.883	ENSHBUG00000011624	-	95	66.883	Haplochromis_burtoni
ENSDARG00000036386	rbm4.1	100	69.740	ENSHBUG00000011610	rbm4.1	100	70.213	Haplochromis_burtoni
ENSDARG00000036386	rbm4.1	98	61.404	ENSHCOG00000011413	-	99	61.404	Hippocampus_comes
ENSDARG00000036386	rbm4.1	79	79.710	ENSHCOG00000011403	rbm4.1	98	61.765	Hippocampus_comes
ENSDARG00000036386	rbm4.1	79	77.536	ENSIPUG00000022937	rbm4.2	100	53.756	Ictalurus_punctatus
ENSDARG00000036386	rbm4.1	100	70.115	ENSIPUG00000022931	rbm4.1	100	71.954	Ictalurus_punctatus
ENSDARG00000036386	rbm4.1	100	65.187	ENSKMAG00000006556	rbm4.1	100	65.187	Kryptolebias_marmoratus
ENSDARG00000036386	rbm4.1	79	68.841	ENSKMAG00000006528	-	99	44.368	Kryptolebias_marmoratus
ENSDARG00000036386	rbm4.1	100	68.779	ENSLBEG00000019782	rbm4.1	100	68.706	Labrus_bergylta
ENSDARG00000036386	rbm4.1	79	68.841	ENSLBEG00000019756	-	86	68.841	Labrus_bergylta
ENSDARG00000036386	rbm4.1	79	50.725	ENSLACG00000006343	zgc:77262	52	50.725	Latimeria_chalumnae
ENSDARG00000036386	rbm4.1	79	81.884	ENSLOCG00000002772	rbm4.1	93	81.884	Lepisosteus_oculatus
ENSDARG00000036386	rbm4.1	79	71.014	ENSMAMG00000001760	-	99	49.652	Mastacembelus_armatus
ENSDARG00000036386	rbm4.1	100	68.471	ENSMAMG00000001765	rbm4.1	100	68.941	Mastacembelus_armatus
ENSDARG00000036386	rbm4.1	79	63.043	ENSMZEG00005028161	-	82	60.544	Maylandia_zebra
ENSDARG00000036386	rbm4.1	99	58.192	ENSMZEG00005009210	-	98	58.192	Maylandia_zebra
ENSDARG00000036386	rbm4.1	100	69.740	ENSMZEG00005009205	rbm4.1	100	70.213	Maylandia_zebra
ENSDARG00000036386	rbm4.1	79	71.533	ENSMZEG00005028160	-	96	70.213	Maylandia_zebra
ENSDARG00000036386	rbm4.1	79	71.739	ENSMMOG00000020484	-	86	71.739	Mola_mola
ENSDARG00000036386	rbm4.1	100	67.681	ENSMMOG00000020479	rbm4.1	100	68.150	Mola_mola
ENSDARG00000036386	rbm4.1	100	68.224	ENSMALG00000020544	rbm4.1	100	68.224	Monopterus_albus
ENSDARG00000036386	rbm4.1	79	71.014	ENSMALG00000020557	-	99	49.541	Monopterus_albus
ENSDARG00000036386	rbm4.1	100	69.740	ENSNBRG00000017755	rbm4.1	100	70.213	Neolamprologus_brichardi
ENSDARG00000036386	rbm4.1	88	66.234	ENSNBRG00000017763	-	90	70.504	Neolamprologus_brichardi
ENSDARG00000036386	rbm4.1	100	69.740	ENSONIG00000015730	rbm4.1	100	70.213	Oreochromis_niloticus
ENSDARG00000036386	rbm4.1	100	65.888	ENSORLG00000012496	rbm4.1	100	65.888	Oryzias_latipes
ENSDARG00000036386	rbm4.1	100	65.888	ENSORLG00020012454	rbm4.1	100	65.888	Oryzias_latipes_hni
ENSDARG00000036386	rbm4.1	100	65.888	ENSORLG00015013678	rbm4.1	100	65.888	Oryzias_latipes_hsok
ENSDARG00000036386	rbm4.1	100	66.589	ENSOMEG00000001001	rbm4.1	100	66.589	Oryzias_melastigma
ENSDARG00000036386	rbm4.1	100	67.447	ENSPKIG00000020805	rbm4.1	87	84.058	Paramormyrops_kingsleyae
ENSDARG00000036386	rbm4.1	81	76.596	ENSPMGG00000004331	rbm4.1	94	76.596	Periophthalmus_magnuspinnatus
ENSDARG00000036386	rbm4.1	79	54.015	ENSPMAG00000003433	rbm4.2	84	54.190	Petromyzon_marinus
ENSDARG00000036386	rbm4.1	100	65.647	ENSPFOG00000012675	rbm4.1	100	64.706	Poecilia_formosa
ENSDARG00000036386	rbm4.1	79	71.739	ENSPFOG00000012685	-	99	48.077	Poecilia_formosa
ENSDARG00000036386	rbm4.1	100	65.647	ENSPLAG00000018572	rbm4.1	100	64.706	Poecilia_latipinna
ENSDARG00000036386	rbm4.1	88	66.234	ENSPLAG00000018569	-	94	66.234	Poecilia_latipinna
ENSDARG00000036386	rbm4.1	88	66.234	ENSPMEG00000006278	-	94	66.234	Poecilia_mexicana
ENSDARG00000036386	rbm4.1	100	65.647	ENSPMEG00000006290	rbm4.1	100	64.706	Poecilia_mexicana
ENSDARG00000036386	rbm4.1	100	65.647	ENSPREG00000003724	rbm4.1	100	64.706	Poecilia_reticulata
ENSDARG00000036386	rbm4.1	99	67.742	ENSPREG00000003764	-	99	67.742	Poecilia_reticulata
ENSDARG00000036386	rbm4.1	88	66.883	ENSPNYG00000004649	-	90	71.223	Pundamilia_nyererei
ENSDARG00000036386	rbm4.1	100	69.740	ENSPNYG00000004662	rbm4.1	100	70.213	Pundamilia_nyererei
ENSDARG00000036386	rbm4.1	100	74.882	ENSPNAG00000002539	rbm4.1	100	77.725	Pygocentrus_nattereri
ENSDARG00000036386	rbm4.1	100	54.717	ENSPNAG00000013057	rbm4.2	100	53.991	Pygocentrus_nattereri
ENSDARG00000036386	rbm4.1	100	66.979	ENSSFOG00015021996	sf1	100	68.692	Scleropages_formosus
ENSDARG00000036386	rbm4.1	79	51.667	ENSSFOG00015018567	zgc:77262	89	51.667	Scleropages_formosus
ENSDARG00000036386	rbm4.1	100	67.765	ENSSMAG00000007571	rbm4.1	100	66.274	Scophthalmus_maximus
ENSDARG00000036386	rbm4.1	79	70.290	ENSSMAG00000007575	-	99	65.584	Scophthalmus_maximus
ENSDARG00000036386	rbm4.1	79	72.464	ENSSDUG00000003936	-	99	52.983	Seriola_dumerili
ENSDARG00000036386	rbm4.1	100	69.882	ENSSDUG00000003925	rbm4.1	100	70.353	Seriola_dumerili
ENSDARG00000036386	rbm4.1	79	71.014	ENSSLDG00000013157	-	99	52.267	Seriola_lalandi_dorsalis
ENSDARG00000036386	rbm4.1	100	69.882	ENSSLDG00000013147	rbm4.1	100	70.353	Seriola_lalandi_dorsalis
ENSDARG00000036386	rbm4.1	100	69.718	ENSSPAG00000019053	rbm4.1	100	70.423	Stegastes_partitus
ENSDARG00000036386	rbm4.1	99	48.712	ENSSPAG00000019046	-	99	48.585	Stegastes_partitus
ENSDARG00000036386	rbm4.1	100	64.387	ENSTRUG00000013334	rbm4.1	100	64.387	Takifugu_rubripes
ENSDARG00000036386	rbm4.1	99	48.916	ENSTRUG00000013328	-	99	48.193	Takifugu_rubripes
ENSDARG00000036386	rbm4.1	79	66.667	ENSTNIG00000000316	-	98	49.275	Tetraodon_nigroviridis
ENSDARG00000036386	rbm4.1	100	76.884	ENSTNIG00000004821	rbm4.1	100	76.884	Tetraodon_nigroviridis
ENSDARG00000036386	rbm4.1	99	61.086	ENSXETG00000026649	rbm4b	99	61.086	Xenopus_tropicalis
ENSDARG00000036386	rbm4.1	79	72.464	ENSXCOG00000003730	-	87	72.143	Xiphophorus_couchianus
ENSDARG00000036386	rbm4.1	100	65.647	ENSXCOG00000003731	rbm4.1	100	64.706	Xiphophorus_couchianus
ENSDARG00000036386	rbm4.1	94	72.393	ENSXMAG00000008059	-	99	69.355	Xiphophorus_maculatus
ENSDARG00000036386	rbm4.1	100	65.647	ENSXMAG00000008069	rbm4.1	100	64.706	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function