EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000036625 (Gene tree)
Gene ID: 436817
Gene Symbol: polr2f
Alias: zgc:92790
Full Name: polymerase (RNA) II (DNA directed) polypeptide F
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 9459 bases
Position: chr3:1511199-1520657
Accession: ZDB-GENE-040718-279
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000053200	RNA_pol_Rpb6	PF01192.22	5.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000053201	-	792	-	ENSDARP00000053200	127 (aa)	-	Q6DGS5
ENSDART00000146552	-	888	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000036625's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03020	RNA polymerase	KEGG
dre04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000036625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000036625	polr2f	100	87.402	ENSG00000100142	POLR2F	100	87.402	Homo_sapiens
ENSDARG00000036625	polr2f	100	95.276	ENSAPOG00000002902	polr2f	100	95.276	Acanthochromis_polyacanthus
ENSDARG00000036625	polr2f	100	86.614	ENSAMEG00000010331	POLR2F	100	86.614	Ailuropoda_melanoleuca
ENSDARG00000036625	polr2f	100	95.276	ENSACIG00000000923	polr2f	100	95.276	Amphilophus_citrinellus
ENSDARG00000036625	polr2f	100	96.063	ENSAOCG00000003182	polr2f	100	96.063	Amphiprion_ocellaris
ENSDARG00000036625	polr2f	100	96.063	ENSAPEG00000012999	polr2f	100	96.063	Amphiprion_percula
ENSDARG00000036625	polr2f	100	95.276	ENSATEG00000008929	polr2f	100	95.276	Anabas_testudineus
ENSDARG00000036625	polr2f	80	89.109	ENSAPLG00000015235	POLR2F	85	88.679	Anas_platyrhynchos
ENSDARG00000036625	polr2f	100	88.189	ENSACAG00000015288	POLR2F	100	88.189	Anolis_carolinensis
ENSDARG00000036625	polr2f	100	87.402	ENSANAG00000020840	POLR2F	100	87.402	Aotus_nancymaae
ENSDARG00000036625	polr2f	100	94.488	ENSACLG00000016129	polr2f	100	94.488	Astatotilapia_calliptera
ENSDARG00000036625	polr2f	100	96.063	ENSAMXG00000012812	polr2f	100	96.063	Astyanax_mexicanus
ENSDARG00000036625	polr2f	100	87.402	ENSBTAG00000004820	POLR2F	100	87.402	Bos_taurus
ENSDARG00000036625	polr2f	63	76.250	WBGene00007355	rpb-6	74	66.019	Caenorhabditis_elegans
ENSDARG00000036625	polr2f	100	87.402	ENSCJAG00000048241	POLR2F	100	87.402	Callithrix_jacchus
ENSDARG00000036625	polr2f	100	86.614	ENSCAFG00000001437	POLR2F	100	86.614	Canis_familiaris
ENSDARG00000036625	polr2f	83	89.623	ENSCHIG00000012907	POLR2F	83	89.623	Capra_hircus
ENSDARG00000036625	polr2f	100	86.614	ENSTSYG00000008187	POLR2F	100	86.614	Carlito_syrichta
ENSDARG00000036625	polr2f	83	89.623	ENSCAPG00000013419	POLR2F	83	89.623	Cavia_aperea
ENSDARG00000036625	polr2f	100	87.402	ENSCPOG00000034094	POLR2F	100	87.402	Cavia_porcellus
ENSDARG00000036625	polr2f	100	87.402	ENSCCAG00000036489	POLR2F	100	87.402	Cebus_capucinus
ENSDARG00000036625	polr2f	100	87.402	ENSCATG00000041014	POLR2F	100	87.402	Cercocebus_atys
ENSDARG00000036625	polr2f	100	87.402	ENSCLAG00000017167	POLR2F	100	87.402	Chinchilla_lanigera
ENSDARG00000036625	polr2f	100	87.402	ENSCSAG00000006862	POLR2F	100	87.402	Chlorocebus_sabaeus
ENSDARG00000036625	polr2f	83	90.566	ENSCPBG00000023030	POLR2F	54	90.566	Chrysemys_picta_bellii
ENSDARG00000036625	polr2f	81	75.962	ENSCING00000019359	-	73	75.962	Ciona_intestinalis
ENSDARG00000036625	polr2f	100	87.402	ENSCANG00000041884	POLR2F	100	87.402	Colobus_angolensis_palliatus
ENSDARG00000036625	polr2f	100	87.402	ENSCGRG00001023541	POLR2F	100	87.402	Cricetulus_griseus_chok1gshd
ENSDARG00000036625	polr2f	100	87.402	ENSCGRG00000011921	POLR2F	100	87.402	Cricetulus_griseus_crigri
ENSDARG00000036625	polr2f	83	99.057	ENSCSEG00000006848	polr2f	83	99.057	Cynoglossus_semilaevis
ENSDARG00000036625	polr2f	100	94.488	ENSCVAG00000010437	polr2f	100	94.488	Cyprinodon_variegatus
ENSDARG00000036625	polr2f	100	87.402	ENSDNOG00000005884	POLR2F	100	87.402	Dasypus_novemcinctus
ENSDARG00000036625	polr2f	100	87.402	ENSDORG00000024789	Polr2f	100	87.402	Dipodomys_ordii
ENSDARG00000036625	polr2f	78	70.588	FBgn0003275	RpII18	78	72.549	Drosophila_melanogaster
ENSDARG00000036625	polr2f	54	83.824	ENSEBUG00000008509	polr2f	70	83.824	Eptatretus_burgeri
ENSDARG00000036625	polr2f	77	66.327	ENSEBUG00000002842	-	90	63.462	Eptatretus_burgeri
ENSDARG00000036625	polr2f	60	86.842	ENSEASG00005018802	-	68	86.842	Equus_asinus_asinus
ENSDARG00000036625	polr2f	100	85.827	ENSEEUG00000011014	POLR2F	100	85.827	Erinaceus_europaeus
ENSDARG00000036625	polr2f	100	92.126	ENSELUG00000000319	polr2f	100	92.126	Esox_lucius
ENSDARG00000036625	polr2f	100	86.614	ENSFCAG00000002806	POLR2F	100	86.614	Felis_catus
ENSDARG00000036625	polr2f	100	87.402	ENSFDAG00000009926	POLR2F	100	87.402	Fukomys_damarensis
ENSDARG00000036625	polr2f	88	93.750	ENSFHEG00000005448	polr2f	84	97.170	Fundulus_heteroclitus
ENSDARG00000036625	polr2f	100	86.614	ENSGMOG00000009967	polr2f	100	86.614	Gadus_morhua
ENSDARG00000036625	polr2f	100	88.189	ENSGALG00000012291	POLR2F	100	88.189	Gallus_gallus
ENSDARG00000036625	polr2f	100	93.701	ENSGAFG00000017573	polr2f	100	93.701	Gambusia_affinis
ENSDARG00000036625	polr2f	100	89.764	ENSGACG00000007322	polr2f	100	89.764	Gasterosteus_aculeatus
ENSDARG00000036625	polr2f	100	88.189	ENSGAGG00000021757	POLR2F	100	88.189	Gopherus_agassizii
ENSDARG00000036625	polr2f	100	87.402	ENSGGOG00000005213	POLR2F	100	87.402	Gorilla_gorilla
ENSDARG00000036625	polr2f	100	94.488	ENSHBUG00000022089	polr2f	100	94.488	Haplochromis_burtoni
ENSDARG00000036625	polr2f	100	87.402	ENSHGLG00000018942	POLR2F	100	87.402	Heterocephalus_glaber_female
ENSDARG00000036625	polr2f	100	87.402	ENSHGLG00100012851	POLR2F	100	87.402	Heterocephalus_glaber_male
ENSDARG00000036625	polr2f	100	91.339	ENSHCOG00000006149	polr2f	100	91.339	Hippocampus_comes
ENSDARG00000036625	polr2f	76	97.938	ENSIPUG00000000814	polr2f	100	97.938	Ictalurus_punctatus
ENSDARG00000036625	polr2f	100	87.402	ENSSTOG00000025722	POLR2F	100	87.402	Ictidomys_tridecemlineatus
ENSDARG00000036625	polr2f	100	87.402	ENSJJAG00000008097	Polr2f	100	87.402	Jaculus_jaculus
ENSDARG00000036625	polr2f	100	95.276	ENSKMAG00000014230	polr2f	100	95.276	Kryptolebias_marmoratus
ENSDARG00000036625	polr2f	83	95.283	ENSLBEG00000008383	polr2f	88	95.283	Labrus_bergylta
ENSDARG00000036625	polr2f	100	89.764	ENSLACG00000003931	POLR2F	100	89.764	Latimeria_chalumnae
ENSDARG00000036625	polr2f	100	93.846	ENSLOCG00000011827	polr2f	100	93.846	Lepisosteus_oculatus
ENSDARG00000036625	polr2f	100	87.402	ENSLAFG00000012632	POLR2F	100	87.402	Loxodonta_africana
ENSDARG00000036625	polr2f	100	87.402	ENSMFAG00000033687	POLR2F	100	87.402	Macaca_fascicularis
ENSDARG00000036625	polr2f	83	89.623	ENSMMUG00000038231	POLR2F	87	89.623	Macaca_mulatta
ENSDARG00000036625	polr2f	100	87.402	ENSMNEG00000044365	POLR2F	100	87.402	Macaca_nemestrina
ENSDARG00000036625	polr2f	100	87.402	ENSMLEG00000033077	POLR2F	100	87.402	Mandrillus_leucophaeus
ENSDARG00000036625	polr2f	100	94.488	ENSMAMG00000008056	polr2f	100	94.488	Mastacembelus_armatus
ENSDARG00000036625	polr2f	100	94.488	ENSMZEG00005005705	polr2f	100	94.488	Maylandia_zebra
ENSDARG00000036625	polr2f	100	88.189	ENSMGAG00000012504	POLR2F	100	88.189	Meleagris_gallopavo
ENSDARG00000036625	polr2f	100	87.402	ENSMAUG00000018586	Polr2f	100	87.402	Mesocricetus_auratus
ENSDARG00000036625	polr2f	100	87.402	ENSMICG00000013128	POLR2F	100	87.402	Microcebus_murinus
ENSDARG00000036625	polr2f	100	87.402	ENSMOCG00000000237	Polr2f	100	87.402	Microtus_ochrogaster
ENSDARG00000036625	polr2f	100	96.063	ENSMMOG00000005106	polr2f	100	96.063	Mola_mola
ENSDARG00000036625	polr2f	100	87.402	ENSMODG00000019063	POLR2F	100	87.402	Monodelphis_domestica
ENSDARG00000036625	polr2f	100	95.276	ENSMALG00000001444	polr2f	100	95.276	Monopterus_albus
ENSDARG00000036625	polr2f	100	86.614	MGP_CAROLIEiJ_G0020006	Polr2f	100	86.614	Mus_caroli
ENSDARG00000036625	polr2f	100	86.614	ENSMUSG00000033020	Polr2f	100	86.614	Mus_musculus
ENSDARG00000036625	polr2f	100	86.614	MGP_PahariEiJ_G0020008	Polr2f	100	86.614	Mus_pahari
ENSDARG00000036625	polr2f	100	86.614	MGP_SPRETEiJ_G0020904	Polr2f	100	86.614	Mus_spretus
ENSDARG00000036625	polr2f	100	86.614	ENSMPUG00000012997	POLR2F	100	86.614	Mustela_putorius_furo
ENSDARG00000036625	polr2f	100	85.271	ENSMLUG00000014315	-	100	85.271	Myotis_lucifugus
ENSDARG00000036625	polr2f	98	81.452	ENSMLUG00000029612	-	98	81.452	Myotis_lucifugus
ENSDARG00000036625	polr2f	100	87.402	ENSNGAG00000020682	Polr2f	100	87.402	Nannospalax_galili
ENSDARG00000036625	polr2f	100	95.276	ENSNBRG00000002492	polr2f	100	95.276	Neolamprologus_brichardi
ENSDARG00000036625	polr2f	100	87.402	ENSNLEG00000014987	-	100	87.402	Nomascus_leucogenys
ENSDARG00000036625	polr2f	100	87.402	ENSODEG00000014123	POLR2F	100	87.402	Octodon_degus
ENSDARG00000036625	polr2f	100	95.276	ENSONIG00000008394	polr2f	100	95.276	Oreochromis_niloticus
ENSDARG00000036625	polr2f	100	88.189	ENSOANG00000014684	POLR2F	100	88.189	Ornithorhynchus_anatinus
ENSDARG00000036625	polr2f	100	87.402	ENSOCUG00000012064	POLR2F	100	87.402	Oryctolagus_cuniculus
ENSDARG00000036625	polr2f	100	93.701	ENSORLG00000014580	polr2f	100	93.701	Oryzias_latipes
ENSDARG00000036625	polr2f	100	94.488	ENSORLG00020006910	polr2f	100	94.488	Oryzias_latipes_hni
ENSDARG00000036625	polr2f	90	92.105	ENSORLG00015015332	polr2f	77	92.105	Oryzias_latipes_hsok
ENSDARG00000036625	polr2f	80	91.176	ENSOMEG00000006530	polr2f	65	85.455	Oryzias_melastigma
ENSDARG00000036625	polr2f	100	87.402	ENSOGAG00000025463	POLR2F	100	87.402	Otolemur_garnettii
ENSDARG00000036625	polr2f	100	87.402	ENSOARG00000014692	POLR2F	100	87.402	Ovis_aries
ENSDARG00000036625	polr2f	100	87.402	ENSPPAG00000024276	POLR2F	100	87.402	Pan_paniscus
ENSDARG00000036625	polr2f	100	86.614	ENSPPRG00000013030	POLR2F	100	86.614	Panthera_pardus
ENSDARG00000036625	polr2f	82	88.462	ENSPTIG00000000632	POLR2F	85	88.462	Panthera_tigris_altaica
ENSDARG00000036625	polr2f	100	87.402	ENSPTRG00000014356	POLR2F	100	87.402	Pan_troglodytes
ENSDARG00000036625	polr2f	100	87.402	ENSPANG00000023979	POLR2F	100	87.402	Papio_anubis
ENSDARG00000036625	polr2f	100	96.063	ENSPKIG00000002464	polr2f	100	96.063	Paramormyrops_kingsleyae
ENSDARG00000036625	polr2f	56	95.775	ENSPSIG00000013913	POLR2F	100	95.775	Pelodiscus_sinensis
ENSDARG00000036625	polr2f	100	96.063	ENSPMGG00000009619	polr2f	100	96.063	Periophthalmus_magnuspinnatus
ENSDARG00000036625	polr2f	100	87.402	ENSPEMG00000008322	Polr2f	100	87.402	Peromyscus_maniculatus_bairdii
ENSDARG00000036625	polr2f	100	87.402	ENSPCIG00000012000	-	100	87.402	Phascolarctos_cinereus
ENSDARG00000036625	polr2f	100	94.488	ENSPFOG00000000139	polr2f	100	94.488	Poecilia_formosa
ENSDARG00000036625	polr2f	100	94.488	ENSPLAG00000000988	polr2f	100	94.488	Poecilia_latipinna
ENSDARG00000036625	polr2f	100	94.488	ENSPMEG00000019063	polr2f	100	94.488	Poecilia_mexicana
ENSDARG00000036625	polr2f	77	93.878	ENSPREG00000016749	polr2f	100	93.878	Poecilia_reticulata
ENSDARG00000036625	polr2f	100	87.402	ENSPPYG00000011809	POLR2F	100	87.402	Pongo_abelii
ENSDARG00000036625	polr2f	100	87.402	ENSPCOG00000025716	POLR2F	100	87.402	Propithecus_coquereli
ENSDARG00000036625	polr2f	79	84.000	ENSPVAG00000010107	POLR2F	50	86.076	Pteropus_vampyrus
ENSDARG00000036625	polr2f	100	94.488	ENSPNYG00000019790	polr2f	100	94.488	Pundamilia_nyererei
ENSDARG00000036625	polr2f	100	96.850	ENSPNAG00000009017	polr2f	100	96.850	Pygocentrus_nattereri
ENSDARG00000036625	polr2f	100	86.614	ENSRNOG00000011214	Polr2f	100	86.614	Rattus_norvegicus
ENSDARG00000036625	polr2f	100	87.402	ENSRBIG00000044878	POLR2F	100	87.402	Rhinopithecus_bieti
ENSDARG00000036625	polr2f	100	87.402	ENSRROG00000019586	POLR2F	100	87.402	Rhinopithecus_roxellana
ENSDARG00000036625	polr2f	100	87.402	ENSSBOG00000023340	POLR2F	100	87.402	Saimiri_boliviensis_boliviensis
ENSDARG00000036625	polr2f	100	87.402	ENSSHAG00000008502	POLR2F	100	87.402	Sarcophilus_harrisii
ENSDARG00000036625	polr2f	100	95.276	ENSSFOG00015012810	polr2f	100	95.276	Scleropages_formosus
ENSDARG00000036625	polr2f	100	95.276	ENSSMAG00000005354	polr2f	100	95.276	Scophthalmus_maximus
ENSDARG00000036625	polr2f	100	96.063	ENSSDUG00000016273	polr2f	100	96.063	Seriola_dumerili
ENSDARG00000036625	polr2f	100	96.063	ENSSLDG00000024895	polr2f	100	96.063	Seriola_lalandi_dorsalis
ENSDARG00000036625	polr2f	100	88.189	ENSSPUG00000011343	POLR2F	100	88.189	Sphenodon_punctatus
ENSDARG00000036625	polr2f	100	94.488	ENSSPAG00000019646	polr2f	100	94.488	Stegastes_partitus
ENSDARG00000036625	polr2f	100	86.614	ENSSSCG00000000116	POLR2F	100	86.614	Sus_scrofa
ENSDARG00000036625	polr2f	80	90.099	ENSTGUG00000010476	POLR2F	93	87.402	Taeniopygia_guttata
ENSDARG00000036625	polr2f	57	88.889	ENSTGUG00000016504	-	88	88.312	Taeniopygia_guttata
ENSDARG00000036625	polr2f	100	95.276	ENSTRUG00000021130	polr2f	71	95.276	Takifugu_rubripes
ENSDARG00000036625	polr2f	100	96.063	ENSTNIG00000010827	polr2f	100	96.063	Tetraodon_nigroviridis
ENSDARG00000036625	polr2f	79	84.000	ENSTTRG00000004817	POLR2F	50	86.076	Tursiops_truncatus
ENSDARG00000036625	polr2f	100	86.614	ENSUAMG00000020504	POLR2F	100	86.614	Ursus_americanus
ENSDARG00000036625	polr2f	100	86.614	ENSUMAG00000015052	POLR2F	100	86.614	Ursus_maritimus
ENSDARG00000036625	polr2f	83	88.679	ENSVVUG00000024021	POLR2F	80	88.679	Vulpes_vulpes
ENSDARG00000036625	polr2f	100	89.764	ENSXETG00000006346	polr2f	100	89.764	Xenopus_tropicalis
ENSDARG00000036625	polr2f	100	94.488	ENSXCOG00000015983	polr2f	100	94.488	Xiphophorus_couchianus
ENSDARG00000036625	polr2f	100	94.488	ENSXMAG00000001559	polr2f	100	94.488	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	-	IEA	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process