EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000037405 (Gene tree)
Gene ID: 550461
Gene Symbol: zgc:112083
Alias: im:7144560|wu:fb73f06
Full Name: zgc:112083
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 13805 bases
Position: chr15:19990068-20003872
Accession: ZDB-GENE-050417-284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000054427	zf-C2H2	PF00096.26	8.5e-17	1	2
ENSDARP00000054427	zf-C2H2	PF00096.26	8.5e-17	2	2
ENSDARP00000149261	zf-C2H2	PF00096.26	8.5e-17	1	2
ENSDARP00000149261	zf-C2H2	PF00096.26	8.5e-17	2	2
ENSDARP00000054427	zf-met	PF12874.7	3.8e-05	1	1
ENSDARP00000149261	zf-met	PF12874.7	3.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000054428	-	2229	XM_009291649	ENSDARP00000054427	504 (aa)	XP_009289924	Q567F5
ENSDART00000155199	-	902	-	ENSDARP00000128787	52 (aa)	-	X1WEY5
ENSDART00000154033	-	846	-	ENSDARP00000129268	181 (aa)	-	X1WGB3
ENSDART00000186677	-	1521	-	ENSDARP00000149261	504 (aa)	-	Q567F5

Gene Model

Click here to download ENSDARG00000037405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000037405's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000037405	zgc:112083	99	45.020	ENSDARG00000004851	hinfp	84	49.880

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000037405	zgc:112083	84	46.495	ENSAPOG00000016594	hinfp	86	46.495	Acanthochromis_polyacanthus
ENSDARG00000037405	zgc:112083	84	47.073	ENSAOCG00000014008	hinfp	86	47.073	Amphiprion_ocellaris
ENSDARG00000037405	zgc:112083	84	47.430	ENSAPEG00000002011	hinfp	86	47.430	Amphiprion_percula
ENSDARG00000037405	zgc:112083	79	49.132	ENSACLG00000014969	hinfp	84	48.317	Astatotilapia_calliptera
ENSDARG00000037405	zgc:112083	99	45.614	ENSAMXG00000003514	hinfp	80	52.020	Astyanax_mexicanus
ENSDARG00000037405	zgc:112083	80	53.676	ENSCPBG00000012908	-	80	53.676	Chrysemys_picta_bellii
ENSDARG00000037405	zgc:112083	79	48.628	ENSCVAG00000012763	hinfp	81	48.628	Cyprinodon_variegatus
ENSDARG00000037405	zgc:112083	78	43.885	ENSEBUG00000007941	hinfp	83	43.885	Eptatretus_burgeri
ENSDARG00000037405	zgc:112083	78	48.861	ENSFHEG00000003465	hinfp	83	48.387	Fundulus_heteroclitus
ENSDARG00000037405	zgc:112083	77	51.031	ENSGMOG00000005447	hinfp	96	51.031	Gadus_morhua
ENSDARG00000037405	zgc:112083	79	48.000	ENSGAFG00000004250	hinfp	81	48.000	Gambusia_affinis
ENSDARG00000037405	zgc:112083	78	48.241	ENSGACG00000020411	hinfp	97	48.241	Gasterosteus_aculeatus
ENSDARG00000037405	zgc:112083	80	53.808	ENSGAGG00000009315	-	79	53.808	Gopherus_agassizii
ENSDARG00000037405	zgc:112083	79	49.631	ENSGGOG00000008087	HINFP	79	49.631	Gorilla_gorilla
ENSDARG00000037405	zgc:112083	79	49.254	ENSHBUG00000023339	hinfp	84	48.558	Haplochromis_burtoni
ENSDARG00000037405	zgc:112083	87	43.848	ENSHCOG00000002113	hinfp	82	47.475	Hippocampus_comes
ENSDARG00000037405	zgc:112083	99	44.950	ENSIPUG00000008809	hinfp	87	49.883	Ictalurus_punctatus
ENSDARG00000037405	zgc:112083	99	62.598	ENSKMAG00000019874	zgc:112083	99	63.889	Kryptolebias_marmoratus
ENSDARG00000037405	zgc:112083	79	48.387	ENSKMAG00000008905	hinfp	81	48.387	Kryptolebias_marmoratus
ENSDARG00000037405	zgc:112083	79	47.525	ENSLBEG00000024749	hinfp	84	47.525	Labrus_bergylta
ENSDARG00000037405	zgc:112083	99	45.383	ENSLOCG00000003801	hinfp	81	52.405	Lepisosteus_oculatus
ENSDARG00000037405	zgc:112083	100	73.016	ENSLOCG00000004586	zgc:112083	98	73.016	Lepisosteus_oculatus
ENSDARG00000037405	zgc:112083	79	48.649	ENSMFAG00000035740	HINFP	79	49.386	Macaca_fascicularis
ENSDARG00000037405	zgc:112083	79	49.254	ENSMZEG00005016624	hinfp	84	48.558	Maylandia_zebra
ENSDARG00000037405	zgc:112083	98	43.393	ENSMGAG00000002682	HINFP	76	48.649	Meleagris_gallopavo
ENSDARG00000037405	zgc:112083	79	47.772	ENSMMOG00000016620	hinfp	90	45.921	Mola_mola
ENSDARG00000037405	zgc:112083	99	43.275	ENSMALG00000017304	hinfp	81	49.132	Monopterus_albus
ENSDARG00000037405	zgc:112083	79	49.254	ENSNBRG00000020685	hinfp	84	48.558	Neolamprologus_brichardi
ENSDARG00000037405	zgc:112083	79	49.877	ENSNLEG00000007387	HINFP	79	49.877	Nomascus_leucogenys
ENSDARG00000037405	zgc:112083	78	50.127	ENSONIG00000005379	hinfp	82	49.876	Oreochromis_niloticus
ENSDARG00000037405	zgc:112083	81	46.829	ENSOMEG00000000955	hinfp	84	46.829	Oryzias_melastigma
ENSDARG00000037405	zgc:112083	79	49.631	ENSPPAG00000042389	HINFP	79	49.631	Pan_paniscus
ENSDARG00000037405	zgc:112083	79	49.631	ENSPTRG00000004372	HINFP	79	49.631	Pan_troglodytes
ENSDARG00000037405	zgc:112083	99	45.759	ENSPKIG00000018654	hinfp	80	52.618	Paramormyrops_kingsleyae
ENSDARG00000037405	zgc:112083	100	73.964	ENSPKIG00000012562	zgc:112083	100	73.964	Paramormyrops_kingsleyae
ENSDARG00000037405	zgc:112083	98	61.584	ENSPMGG00000011183	zgc:112083	98	61.782	Periophthalmus_magnuspinnatus
ENSDARG00000037405	zgc:112083	79	48.750	ENSPFOG00000010093	hinfp	82	48.750	Poecilia_formosa
ENSDARG00000037405	zgc:112083	79	48.500	ENSPLAG00000015218	hinfp	82	48.500	Poecilia_latipinna
ENSDARG00000037405	zgc:112083	79	48.750	ENSPMEG00000008910	hinfp	82	48.750	Poecilia_mexicana
ENSDARG00000037405	zgc:112083	79	48.250	ENSPREG00000022954	hinfp	94	43.408	Poecilia_reticulata
ENSDARG00000037405	zgc:112083	79	49.254	ENSPNYG00000017332	hinfp	84	48.558	Pundamilia_nyererei
ENSDARG00000037405	zgc:112083	99	45.652	ENSPNAG00000012579	hinfp	80	51.899	Pygocentrus_nattereri
ENSDARG00000037405	zgc:112083	100	82.143	ENSPNAG00000013245	zgc:112083	100	82.341	Pygocentrus_nattereri
ENSDARG00000037405	zgc:112083	100	73.570	ENSSFOG00015002582	zgc:112083	100	73.084	Scleropages_formosus
ENSDARG00000037405	zgc:112083	99	45.243	ENSSFOG00015008241	hinfp	78	51.880	Scleropages_formosus
ENSDARG00000037405	zgc:112083	84	44.289	ENSSMAG00000014076	hinfp	96	41.615	Scophthalmus_maximus
ENSDARG00000037405	zgc:112083	84	46.963	ENSSDUG00000010783	hinfp	86	46.963	Seriola_dumerili
ENSDARG00000037405	zgc:112083	84	46.963	ENSSLDG00000018686	hinfp	86	46.963	Seriola_lalandi_dorsalis
ENSDARG00000037405	zgc:112083	94	38.650	ENSSPAG00000016177	hinfp	86	41.822	Stegastes_partitus
ENSDARG00000037405	zgc:112083	84	46.172	ENSTRUG00000016621	hinfp	92	46.172	Takifugu_rubripes
ENSDARG00000037405	zgc:112083	79	46.437	ENSTNIG00000011746	hinfp	99	47.654	Tetraodon_nigroviridis
ENSDARG00000037405	zgc:112083	79	48.500	ENSXCOG00000006699	hinfp	80	48.750	Xiphophorus_couchianus
ENSDARG00000037405	zgc:112083	79	48.250	ENSXMAG00000005943	hinfp	84	48.500	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function