EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000037675 (Gene tree)
Gene ID: 553507
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 54433 bases
Position: chr14:5588029-5642461
Accession: ZDB-GENE-080723-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000146562	Nucleoplasmin	PF03066.15	1.2e-36	1	1
ENSDARP00000054875	Nucleoplasmin	PF03066.15	1.4e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000054876	-	3431	XM_005173088	ENSDARP00000054875	329 (aa)	XP_005173145	F1RD77
ENSDART00000183859	-	897	-	ENSDARP00000146562	298 (aa)	-	A0A2R8PZA4

Gene Model

Click here to download ENSDARG00000037675's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000037675's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000037675	npm1b	96	42.321	ENSDARG00000014329	npm1a	98	42.321

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000037675	npm1b	99	66.000	ENSAPOG00000004268	npm1b	99	66.000	Acanthochromis_polyacanthus
ENSDARG00000037675	npm1b	99	66.445	ENSAOCG00000012549	npm1b	99	66.113	Amphiprion_ocellaris
ENSDARG00000037675	npm1b	99	66.107	ENSAPEG00000000868	npm1b	99	65.772	Amphiprion_percula
ENSDARG00000037675	npm1b	99	63.245	ENSATEG00000006254	npm1b	99	65.017	Anabas_testudineus
ENSDARG00000037675	npm1b	96	43.836	ENSACAG00000015626	-	96	45.485	Anolis_carolinensis
ENSDARG00000037675	npm1b	99	75.084	ENSAMXG00000042148	npm1b	99	73.826	Astyanax_mexicanus
ENSDARG00000037675	npm1b	84	34.902	ENSCAFG00000023359	-	70	41.935	Canis_familiaris
ENSDARG00000037675	npm1b	96	46.075	ENSCPBG00000021221	-	60	44.444	Chrysemys_picta_bellii
ENSDARG00000037675	npm1b	99	61.513	ENSCSEG00000004530	npm1b	99	63.279	Cynoglossus_semilaevis
ENSDARG00000037675	npm1b	99	62.914	ENSCVAG00000013016	npm1b	99	62.583	Cyprinodon_variegatus
ENSDARG00000037675	npm1b	99	62.987	ENSELUG00000022123	npm1b	98	64.286	Esox_lucius
ENSDARG00000037675	npm1b	95	46.154	ENSFALG00000003320	-	94	45.645	Ficedula_albicollis
ENSDARG00000037675	npm1b	99	64.145	ENSFHEG00000020794	npm1b	99	63.816	Fundulus_heteroclitus
ENSDARG00000037675	npm1b	99	62.000	ENSGMOG00000002689	npm1b	100	61.333	Gadus_morhua
ENSDARG00000037675	npm1b	99	44.590	ENSGALG00000002197	-	73	44.951	Gallus_gallus
ENSDARG00000037675	npm1b	99	60.927	ENSGAFG00000017709	npm1b	99	62.126	Gambusia_affinis
ENSDARG00000037675	npm1b	99	64.430	ENSGACG00000016706	npm1b	100	66.779	Gasterosteus_aculeatus
ENSDARG00000037675	npm1b	96	44.218	ENSGAGG00000020250	-	96	44.558	Gopherus_agassizii
ENSDARG00000037675	npm1b	99	64.238	ENSHBUG00000019903	npm1b	95	65.798	Haplochromis_burtoni
ENSDARG00000037675	npm1b	99	63.245	ENSHCOG00000003895	npm1b	99	63.245	Hippocampus_comes
ENSDARG00000037675	npm1b	100	74.086	ENSIPUG00000020165	npm1b	100	73.754	Ictalurus_punctatus
ENSDARG00000037675	npm1b	100	65.017	ENSKMAG00000008260	npm1b	100	64.686	Kryptolebias_marmoratus
ENSDARG00000037675	npm1b	51	71.006	ENSLBEG00000001304	-	82	73.964	Labrus_bergylta
ENSDARG00000037675	npm1b	99	34.333	ENSLACG00000013460	-	100	34.853	Latimeria_chalumnae
ENSDARG00000037675	npm1b	90	49.650	ENSLACG00000001779	-	100	50.173	Latimeria_chalumnae
ENSDARG00000037675	npm1b	94	53.767	ENSLOCG00000001942	npm1b	99	54.452	Lepisosteus_oculatus
ENSDARG00000037675	npm1b	71	60.811	ENSMAMG00000015335	npm1b	98	61.435	Mastacembelus_armatus
ENSDARG00000037675	npm1b	94	45.423	ENSMGAG00000001591	-	100	45.070	Meleagris_gallopavo
ENSDARG00000037675	npm1b	81	62.449	ENSMALG00000015383	npm1b	98	63.563	Monopterus_albus
ENSDARG00000037675	npm1b	99	62.542	ENSONIG00000001397	npm1b	99	64.706	Oreochromis_niloticus
ENSDARG00000037675	npm1b	99	56.610	ENSOMEG00000003414	npm1b	100	54.422	Oryzias_melastigma
ENSDARG00000037675	npm1b	99	64.401	ENSPKIG00000020050	npm1b	98	65.372	Paramormyrops_kingsleyae
ENSDARG00000037675	npm1b	97	45.763	ENSPSIG00000011204	-	92	46.048	Pelodiscus_sinensis
ENSDARG00000037675	npm1b	94	37.370	ENSPMAG00000004930	npm1b	99	37.500	Petromyzon_marinus
ENSDARG00000037675	npm1b	99	63.696	ENSPFOG00000018357	npm1b	99	63.907	Poecilia_formosa
ENSDARG00000037675	npm1b	99	78.114	ENSPNAG00000005498	npm1b	99	74.832	Pygocentrus_nattereri
ENSDARG00000037675	npm1b	97	62.284	ENSSFOG00015005064	npm1b	97	62.630	Scleropages_formosus
ENSDARG00000037675	npm1b	99	64.548	ENSSMAG00000008088	npm1b	99	63.880	Scophthalmus_maximus
ENSDARG00000037675	npm1b	99	67.752	ENSSDUG00000007726	npm1b	99	67.442	Seriola_dumerili
ENSDARG00000037675	npm1b	99	68.078	ENSSLDG00000021396	npm1b	99	67.774	Seriola_lalandi_dorsalis
ENSDARG00000037675	npm1b	50	51.899	ENSSPUG00000017271	-	80	52.795	Sphenodon_punctatus
ENSDARG00000037675	npm1b	53	47.826	ENSSPUG00000015604	-	79	48.447	Sphenodon_punctatus
ENSDARG00000037675	npm1b	99	62.252	ENSSPAG00000011152	npm1b	99	64.474	Stegastes_partitus
ENSDARG00000037675	npm1b	94	44.251	ENSTGUG00000014970	-	100	44.599	Taeniopygia_guttata
ENSDARG00000037675	npm1b	99	62.752	ENSTRUG00000008105	npm1b	94	63.455	Takifugu_rubripes
ENSDARG00000037675	npm1b	99	61.333	ENSTNIG00000013057	npm1b	99	61.462	Tetraodon_nigroviridis
ENSDARG00000037675	npm1b	99	46.154	ENSXETG00000008403	npm1	95	46.939	Xenopus_tropicalis
ENSDARG00000037675	npm1b	99	63.696	ENSXMAG00000001986	npm1b	99	63.696	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0030097	hemopoiesis	20197555.	IMP	Process
GO:0042393	histone binding	21873635.	IBA	Function
GO:0042981	regulation of apoptotic process	28432080.	IGI	Process