EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000038312 (Gene tree)
Gene ID: 445388
Gene Symbol: rcl1
Alias: zgc:109921
Full Name: RNA terminal phosphate cyclase-like 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 36242 bases
Position: chr5:1833741-1869982
Accession: ZDB-GENE-040930-11
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000055877	RTC	PF01137.21	2.3e-57	1	1
ENSDARP00000055877	RTC_insert	PF05189.13	1.7e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000055878	-	1539	XM_021476091	ENSDARP00000055877	367 (aa)	XP_021331766	F1RAI8

Gene Model

Click here to download ENSDARG00000038312's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000038312's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000038312	rcl1	100	76.567	ENSG00000120158	RCL1	96	86.260	Homo_sapiens
ENSDARG00000038312	rcl1	100	82.289	ENSAPOG00000015666	rcl1	99	82.289	Acanthochromis_polyacanthus
ENSDARG00000038312	rcl1	100	77.929	ENSAMEG00000002631	RCL1	98	77.929	Ailuropoda_melanoleuca
ENSDARG00000038312	rcl1	100	80.381	ENSACIG00000021195	rcl1	99	80.381	Amphilophus_citrinellus
ENSDARG00000038312	rcl1	100	81.471	ENSAOCG00000002223	rcl1	99	81.471	Amphiprion_ocellaris
ENSDARG00000038312	rcl1	100	82.016	ENSAPEG00000006905	rcl1	99	82.016	Amphiprion_percula
ENSDARG00000038312	rcl1	99	79.452	ENSATEG00000020026	rcl1	98	79.452	Anabas_testudineus
ENSDARG00000038312	rcl1	90	73.252	ENSAPLG00000006031	RCL1	100	73.252	Anas_platyrhynchos
ENSDARG00000038312	rcl1	100	71.662	ENSACAG00000003640	RCL1	98	71.662	Anolis_carolinensis
ENSDARG00000038312	rcl1	100	76.294	ENSANAG00000037372	RCL1	98	76.294	Aotus_nancymaae
ENSDARG00000038312	rcl1	100	79.837	ENSACLG00000021724	rcl1	99	79.837	Astatotilapia_calliptera
ENSDARG00000038312	rcl1	100	83.924	ENSAMXG00000033394	rcl1	99	83.924	Astyanax_mexicanus
ENSDARG00000038312	rcl1	99	44.772	WBGene00022852	ZK1127.5	98	44.772	Caenorhabditis_elegans
ENSDARG00000038312	rcl1	100	76.567	ENSCJAG00000011202	RCL1	98	76.567	Callithrix_jacchus
ENSDARG00000038312	rcl1	100	77.657	ENSCAFG00000002091	RCL1	98	77.657	Canis_familiaris
ENSDARG00000038312	rcl1	100	77.657	ENSCAFG00020000638	RCL1	77	77.657	Canis_lupus_dingo
ENSDARG00000038312	rcl1	100	76.022	ENSCHIG00000012407	RCL1	98	76.022	Capra_hircus
ENSDARG00000038312	rcl1	89	77.439	ENSTSYG00000009592	RCL1	97	81.319	Carlito_syrichta
ENSDARG00000038312	rcl1	69	63.006	ENSCAPG00000013575	RCL1	100	63.006	Cavia_aperea
ENSDARG00000038312	rcl1	100	76.294	ENSCPOG00000015354	RCL1	98	76.294	Cavia_porcellus
ENSDARG00000038312	rcl1	100	76.567	ENSCCAG00000033505	RCL1	97	80.874	Cebus_capucinus
ENSDARG00000038312	rcl1	100	76.567	ENSCATG00000034721	RCL1	97	80.769	Cercocebus_atys
ENSDARG00000038312	rcl1	100	76.022	ENSCLAG00000007445	RCL1	98	76.022	Chinchilla_lanigera
ENSDARG00000038312	rcl1	100	76.567	ENSCSAG00000008811	RCL1	98	76.567	Chlorocebus_sabaeus
ENSDARG00000038312	rcl1	86	68.038	ENSCHOG00000007216	RCL1	98	68.038	Choloepus_hoffmanni
ENSDARG00000038312	rcl1	100	74.659	ENSCPBG00000025481	RCL1	94	75.152	Chrysemys_picta_bellii
ENSDARG00000038312	rcl1	100	56.486	ENSCING00000019565	-	98	56.486	Ciona_intestinalis
ENSDARG00000038312	rcl1	100	76.567	ENSCANG00000027099	RCL1	98	76.567	Colobus_angolensis_palliatus
ENSDARG00000038312	rcl1	100	76.567	ENSCGRG00001013748	Rcl1	98	76.567	Cricetulus_griseus_chok1gshd
ENSDARG00000038312	rcl1	90	77.204	ENSCGRG00000005843	Rcl1	99	77.204	Cricetulus_griseus_crigri
ENSDARG00000038312	rcl1	100	80.926	ENSCSEG00000000712	rcl1	97	80.926	Cynoglossus_semilaevis
ENSDARG00000038312	rcl1	100	81.744	ENSCVAG00000011536	rcl1	99	81.744	Cyprinodon_variegatus
ENSDARG00000038312	rcl1	72	77.068	ENSDNOG00000019911	RCL1	100	80.556	Dasypus_novemcinctus
ENSDARG00000038312	rcl1	99	76.986	ENSDORG00000015645	Rcl1	98	76.986	Dipodomys_ordii
ENSDARG00000038312	rcl1	99	52.291	FBgn0020909	Rtc1	97	53.100	Drosophila_melanogaster
ENSDARG00000038312	rcl1	89	53.049	ENSETEG00000014087	-	100	53.049	Echinops_telfairi
ENSDARG00000038312	rcl1	100	52.989	ENSEBUG00000016621	-	98	52.989	Eptatretus_burgeri
ENSDARG00000038312	rcl1	100	76.567	ENSEASG00005010653	RCL1	98	76.567	Equus_asinus_asinus
ENSDARG00000038312	rcl1	100	76.567	ENSECAG00000015973	RCL1	98	76.567	Equus_caballus
ENSDARG00000038312	rcl1	100	65.668	ENSEEUG00000009801	RCL1	98	65.668	Erinaceus_europaeus
ENSDARG00000038312	rcl1	100	79.564	ENSELUG00000007353	rcl1	99	79.564	Esox_lucius
ENSDARG00000038312	rcl1	100	76.294	ENSFCAG00000014557	RCL1	98	76.294	Felis_catus
ENSDARG00000038312	rcl1	99	68.681	ENSFALG00000010553	RCL1	96	68.681	Ficedula_albicollis
ENSDARG00000038312	rcl1	89	75.610	ENSFDAG00000004209	RCL1	100	75.610	Fukomys_damarensis
ENSDARG00000038312	rcl1	100	80.381	ENSFHEG00000011228	rcl1	99	80.381	Fundulus_heteroclitus
ENSDARG00000038312	rcl1	100	80.926	ENSGMOG00000004677	rcl1	99	80.926	Gadus_morhua
ENSDARG00000038312	rcl1	100	72.207	ENSGALG00000015024	RCL1	98	72.207	Gallus_gallus
ENSDARG00000038312	rcl1	100	81.471	ENSGAFG00000007257	rcl1	99	81.471	Gambusia_affinis
ENSDARG00000038312	rcl1	100	80.654	ENSGACG00000017474	rcl1	99	80.654	Gasterosteus_aculeatus
ENSDARG00000038312	rcl1	100	74.387	ENSGAGG00000003689	RCL1	98	74.387	Gopherus_agassizii
ENSDARG00000038312	rcl1	100	76.022	ENSGGOG00000015041	RCL1	97	80.220	Gorilla_gorilla
ENSDARG00000038312	rcl1	100	80.109	ENSHBUG00000001393	rcl1	99	80.109	Haplochromis_burtoni
ENSDARG00000038312	rcl1	100	75.477	ENSHGLG00000016452	RCL1	98	75.477	Heterocephalus_glaber_female
ENSDARG00000038312	rcl1	100	64.578	ENSHGLG00000005368	-	98	64.578	Heterocephalus_glaber_female
ENSDARG00000038312	rcl1	100	65.395	ENSHGLG00100018010	-	98	65.395	Heterocephalus_glaber_male
ENSDARG00000038312	rcl1	90	75.758	ENSHGLG00100008718	-	95	75.758	Heterocephalus_glaber_male
ENSDARG00000038312	rcl1	100	79.564	ENSHCOG00000020170	rcl1	99	79.564	Hippocampus_comes
ENSDARG00000038312	rcl1	100	84.196	ENSIPUG00000018054	RCL1	99	84.196	Ictalurus_punctatus
ENSDARG00000038312	rcl1	100	76.022	ENSSTOG00000000023	RCL1	98	76.022	Ictidomys_tridecemlineatus
ENSDARG00000038312	rcl1	100	76.839	ENSJJAG00000022803	-	98	76.839	Jaculus_jaculus
ENSDARG00000038312	rcl1	100	67.847	ENSJJAG00000015632	-	98	67.847	Jaculus_jaculus
ENSDARG00000038312	rcl1	55	61.881	ENSJJAG00000000764	-	98	61.881	Jaculus_jaculus
ENSDARG00000038312	rcl1	100	79.564	ENSKMAG00000011946	rcl1	99	79.564	Kryptolebias_marmoratus
ENSDARG00000038312	rcl1	99	76.712	ENSLBEG00000003957	rcl1	98	76.712	Labrus_bergylta
ENSDARG00000038312	rcl1	92	71.810	ENSLACG00000004594	RCL1	98	75.710	Latimeria_chalumnae
ENSDARG00000038312	rcl1	100	80.654	ENSLOCG00000010148	rcl1	97	80.654	Lepisosteus_oculatus
ENSDARG00000038312	rcl1	99	75.616	ENSLAFG00000017495	RCL1	98	75.616	Loxodonta_africana
ENSDARG00000038312	rcl1	100	76.567	ENSMFAG00000037906	RCL1	98	76.567	Macaca_fascicularis
ENSDARG00000038312	rcl1	100	76.567	ENSMNEG00000012288	RCL1	97	80.769	Macaca_nemestrina
ENSDARG00000038312	rcl1	100	76.567	ENSMLEG00000043088	RCL1	98	76.567	Mandrillus_leucophaeus
ENSDARG00000038312	rcl1	99	81.096	ENSMAMG00000008311	rcl1	98	81.096	Mastacembelus_armatus
ENSDARG00000038312	rcl1	100	79.837	ENSMZEG00005017292	rcl1	99	79.837	Maylandia_zebra
ENSDARG00000038312	rcl1	59	72.727	ENSMGAG00000002245	RCL1	100	72.727	Meleagris_gallopavo
ENSDARG00000038312	rcl1	59	80.093	ENSMAUG00000008922	Rcl1	100	80.093	Mesocricetus_auratus
ENSDARG00000038312	rcl1	100	76.567	ENSMICG00000015562	RCL1	98	76.567	Microcebus_murinus
ENSDARG00000038312	rcl1	100	77.112	ENSMOCG00000012145	Rcl1	98	77.112	Microtus_ochrogaster
ENSDARG00000038312	rcl1	99	77.869	ENSMMOG00000021264	rcl1	98	77.869	Mola_mola
ENSDARG00000038312	rcl1	95	76.504	ENSMODG00000015377	RCL1	93	76.504	Monodelphis_domestica
ENSDARG00000038312	rcl1	100	79.564	ENSMALG00000018618	rcl1	99	79.564	Monopterus_albus
ENSDARG00000038312	rcl1	100	76.839	MGP_CAROLIEiJ_G0022853	Rcl1	98	76.839	Mus_caroli
ENSDARG00000038312	rcl1	100	76.294	ENSMUSG00000024785	Rcl1	98	76.294	Mus_musculus
ENSDARG00000038312	rcl1	100	76.567	MGP_PahariEiJ_G0014346	Rcl1	100	80.702	Mus_pahari
ENSDARG00000038312	rcl1	100	76.022	MGP_SPRETEiJ_G0023771	Rcl1	100	80.117	Mus_spretus
ENSDARG00000038312	rcl1	100	77.112	ENSMPUG00000004998	RCL1	98	77.112	Mustela_putorius_furo
ENSDARG00000038312	rcl1	100	76.294	ENSMLUG00000009654	RCL1	98	76.294	Myotis_lucifugus
ENSDARG00000038312	rcl1	100	76.839	ENSNGAG00000015327	Rcl1	98	76.839	Nannospalax_galili
ENSDARG00000038312	rcl1	90	79.331	ENSNBRG00000019854	rcl1	99	73.554	Neolamprologus_brichardi
ENSDARG00000038312	rcl1	100	73.842	ENSNLEG00000008891	RCL1	98	73.842	Nomascus_leucogenys
ENSDARG00000038312	rcl1	100	70.845	ENSMEUG00000007653	RCL1	98	70.845	Notamacropus_eugenii
ENSDARG00000038312	rcl1	100	75.749	ENSOPRG00000010965	RCL1	98	75.749	Ochotona_princeps
ENSDARG00000038312	rcl1	90	65.350	ENSODEG00000004151	RCL1	96	65.350	Octodon_degus
ENSDARG00000038312	rcl1	100	80.109	ENSONIG00000003871	rcl1	99	80.109	Oreochromis_niloticus
ENSDARG00000038312	rcl1	67	73.896	ENSOANG00000013193	-	98	73.896	Ornithorhynchus_anatinus
ENSDARG00000038312	rcl1	100	76.022	ENSOCUG00000008161	RCL1	98	76.022	Oryctolagus_cuniculus
ENSDARG00000038312	rcl1	100	79.019	ENSORLG00000010443	rcl1	99	79.019	Oryzias_latipes
ENSDARG00000038312	rcl1	100	79.292	ENSORLG00020012211	rcl1	99	79.292	Oryzias_latipes_hni
ENSDARG00000038312	rcl1	100	78.747	ENSORLG00015001122	rcl1	99	78.747	Oryzias_latipes_hsok
ENSDARG00000038312	rcl1	100	79.837	ENSOMEG00000022976	rcl1	87	79.837	Oryzias_melastigma
ENSDARG00000038312	rcl1	100	76.022	ENSOGAG00000007480	RCL1	98	76.022	Otolemur_garnettii
ENSDARG00000038312	rcl1	100	76.022	ENSOARG00000013463	RCL1	98	76.022	Ovis_aries
ENSDARG00000038312	rcl1	100	76.294	ENSPPAG00000037958	RCL1	98	76.294	Pan_paniscus
ENSDARG00000038312	rcl1	100	75.477	ENSPPRG00000022645	RCL1	96	79.330	Panthera_pardus
ENSDARG00000038312	rcl1	89	76.758	ENSPTIG00000019031	RCL1	100	79.167	Panthera_tigris_altaica
ENSDARG00000038312	rcl1	100	76.022	ENSPTRG00000020743	RCL1	97	80.769	Pan_troglodytes
ENSDARG00000038312	rcl1	100	76.567	ENSPANG00000025151	RCL1	98	76.567	Papio_anubis
ENSDARG00000038312	rcl1	100	79.292	ENSPKIG00000021022	rcl1	99	79.292	Paramormyrops_kingsleyae
ENSDARG00000038312	rcl1	90	73.860	ENSPSIG00000012302	RCL1	100	73.860	Pelodiscus_sinensis
ENSDARG00000038312	rcl1	99	79.178	ENSPMGG00000024007	rcl1	98	79.178	Periophthalmus_magnuspinnatus
ENSDARG00000038312	rcl1	100	77.112	ENSPEMG00000023275	Rcl1	98	77.112	Peromyscus_maniculatus_bairdii
ENSDARG00000038312	rcl1	92	30.372	ENSPMAG00000009110	rtca	93	30.372	Petromyzon_marinus
ENSDARG00000038312	rcl1	100	76.567	ENSPCIG00000000188	RCL1	98	76.567	Phascolarctos_cinereus
ENSDARG00000038312	rcl1	100	81.744	ENSPFOG00000019682	rcl1	98	81.744	Poecilia_formosa
ENSDARG00000038312	rcl1	100	81.744	ENSPLAG00000022354	rcl1	99	81.744	Poecilia_latipinna
ENSDARG00000038312	rcl1	100	81.744	ENSPMEG00000008131	rcl1	99	81.744	Poecilia_mexicana
ENSDARG00000038312	rcl1	100	81.199	ENSPREG00000008032	rcl1	99	81.199	Poecilia_reticulata
ENSDARG00000038312	rcl1	100	76.294	ENSPPYG00000019244	RCL1	98	76.294	Pongo_abelii
ENSDARG00000038312	rcl1	100	68.665	ENSPCAG00000001440	RCL1	98	68.665	Procavia_capensis
ENSDARG00000038312	rcl1	100	76.839	ENSPCOG00000009611	RCL1	97	81.319	Propithecus_coquereli
ENSDARG00000038312	rcl1	100	76.294	ENSPVAG00000015752	RCL1	98	76.294	Pteropus_vampyrus
ENSDARG00000038312	rcl1	100	79.564	ENSPNYG00000012910	rcl1	99	79.564	Pundamilia_nyererei
ENSDARG00000038312	rcl1	100	83.924	ENSPNAG00000028307	rcl1	90	83.924	Pygocentrus_nattereri
ENSDARG00000038312	rcl1	100	76.022	ENSRNOG00000015491	Rcl1	98	76.022	Rattus_norvegicus
ENSDARG00000038312	rcl1	100	76.294	ENSRBIG00000035818	RCL1	98	76.294	Rhinopithecus_bieti
ENSDARG00000038312	rcl1	100	76.567	ENSRROG00000029781	RCL1	97	80.769	Rhinopithecus_roxellana
ENSDARG00000038312	rcl1	99	38.525	YOL010W	-	97	38.525	Saccharomyces_cerevisiae
ENSDARG00000038312	rcl1	100	76.567	ENSSBOG00000026369	RCL1	97	80.874	Saimiri_boliviensis_boliviensis
ENSDARG00000038312	rcl1	90	76.737	ENSSHAG00000014086	RCL1	100	76.737	Sarcophilus_harrisii
ENSDARG00000038312	rcl1	100	79.292	ENSSFOG00015023020	rcl1	99	79.292	Scleropages_formosus
ENSDARG00000038312	rcl1	100	79.837	ENSSMAG00000019751	rcl1	85	79.837	Scophthalmus_maximus
ENSDARG00000038312	rcl1	100	79.019	ENSSDUG00000006349	rcl1	99	79.019	Seriola_dumerili
ENSDARG00000038312	rcl1	100	79.292	ENSSLDG00000022076	rcl1	99	79.292	Seriola_lalandi_dorsalis
ENSDARG00000038312	rcl1	100	76.022	ENSSARG00000009260	RCL1	98	76.022	Sorex_araneus
ENSDARG00000038312	rcl1	100	74.932	ENSSPUG00000016330	RCL1	98	74.932	Sphenodon_punctatus
ENSDARG00000038312	rcl1	100	82.016	ENSSPAG00000018038	rcl1	99	82.016	Stegastes_partitus
ENSDARG00000038312	rcl1	100	76.839	ENSSSCG00000005217	RCL1	81	76.839	Sus_scrofa
ENSDARG00000038312	rcl1	100	71.274	ENSTGUG00000005138	RCL1	98	71.274	Taeniopygia_guttata
ENSDARG00000038312	rcl1	99	79.178	ENSTRUG00000010493	rcl1	98	79.178	Takifugu_rubripes
ENSDARG00000038312	rcl1	99	76.986	ENSTNIG00000013214	rcl1	98	76.986	Tetraodon_nigroviridis
ENSDARG00000038312	rcl1	100	71.935	ENSTBEG00000016339	RCL1	98	71.935	Tupaia_belangeri
ENSDARG00000038312	rcl1	100	76.294	ENSTTRG00000016525	RCL1	98	76.294	Tursiops_truncatus
ENSDARG00000038312	rcl1	100	77.929	ENSUAMG00000005598	RCL1	98	79.811	Ursus_americanus
ENSDARG00000038312	rcl1	89	78.049	ENSUMAG00000017890	RCL1	97	78.049	Ursus_maritimus
ENSDARG00000038312	rcl1	89	77.744	ENSVPAG00000009188	RCL1	100	77.744	Vicugna_pacos
ENSDARG00000038312	rcl1	90	78.723	ENSVVUG00000007304	RCL1	89	78.723	Vulpes_vulpes
ENSDARG00000038312	rcl1	100	67.120	ENSXETG00000000592	rcl1	98	67.120	Xenopus_tropicalis
ENSDARG00000038312	rcl1	100	81.471	ENSXCOG00000004922	rcl1	99	81.471	Xiphophorus_couchianus
ENSDARG00000038312	rcl1	100	81.471	ENSXMAG00000022366	RCL1	99	81.471	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003824	catalytic activity	-	IEA	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005515	protein binding	27474224.	IPI	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	27474224.	IDA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process