EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000039082 (Gene tree)
Gene ID: 641500
Gene Symbol: zgc:123010
Alias: fk11h08|wu:fk11h08
Full Name: zgc:123010
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 35392 bases
Position: chr13:40247379-40282770
Accession: ZDB-GENE-051120-15
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000113359	RRM_1	PF00076.22	5e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140875	-	4414	XM_005169515	ENSDARP00000113359	474 (aa)	XP_005169572	B8JL34

Gene Model

Click here to download ENSDARG00000039082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000039082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000039082	zgc:123010	71	34.577	ENSDARG00000057890	si:dkey-33c12.4	68	33.487

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000039082	zgc:123010	100	66.667	ENSAPOG00000019633	zgc:123010	94	66.667	Acanthochromis_polyacanthus
ENSDARG00000039082	zgc:123010	62	39.080	ENSAPOG00000022403	-	68	30.030	Acanthochromis_polyacanthus
ENSDARG00000039082	zgc:123010	85	50.725	ENSAPOG00000001034	-	76	56.522	Acanthochromis_polyacanthus
ENSDARG00000039082	zgc:123010	61	33.143	ENSAPOG00000005058	si:dkey-33c12.4	52	33.143	Acanthochromis_polyacanthus
ENSDARG00000039082	zgc:123010	72	73.699	ENSACIG00000021684	zgc:123010	89	73.699	Amphilophus_citrinellus
ENSDARG00000039082	zgc:123010	100	66.667	ENSAOCG00000005910	zgc:123010	92	67.427	Amphiprion_ocellaris
ENSDARG00000039082	zgc:123010	69	31.362	ENSAOCG00000020066	si:dkey-33c12.4	55	31.362	Amphiprion_ocellaris
ENSDARG00000039082	zgc:123010	100	66.260	ENSAPEG00000014305	zgc:123010	98	67.012	Amphiprion_percula
ENSDARG00000039082	zgc:123010	69	30.130	ENSATEG00000018885	si:dkey-33c12.4	57	30.130	Anabas_testudineus
ENSDARG00000039082	zgc:123010	98	65.560	ENSATEG00000001220	zgc:123010	71	72.386	Anabas_testudineus
ENSDARG00000039082	zgc:123010	85	52.955	ENSATEG00000022160	-	75	55.614	Anabas_testudineus
ENSDARG00000039082	zgc:123010	100	64.919	ENSACLG00000010188	zgc:123010	71	72.603	Astatotilapia_calliptera
ENSDARG00000039082	zgc:123010	68	31.139	ENSACLG00000014192	si:dkey-33c12.4	72	34.815	Astatotilapia_calliptera
ENSDARG00000039082	zgc:123010	99	50.101	ENSACLG00000012346	-	75	53.728	Astatotilapia_calliptera
ENSDARG00000039082	zgc:123010	71	32.250	ENSAMXG00000010871	si:dkey-33c12.4	64	33.333	Astyanax_mexicanus
ENSDARG00000039082	zgc:123010	100	72.929	ENSAMXG00000041967	zgc:123010	95	72.929	Astyanax_mexicanus
ENSDARG00000039082	zgc:123010	78	64.286	ENSCSEG00000006468	zgc:123010	60	64.021	Cynoglossus_semilaevis
ENSDARG00000039082	zgc:123010	82	36.709	ENSCSEG00000002755	-	56	36.709	Cynoglossus_semilaevis
ENSDARG00000039082	zgc:123010	69	32.391	ENSCVAG00000006564	-	58	32.134	Cyprinodon_variegatus
ENSDARG00000039082	zgc:123010	98	63.918	ENSCVAG00000013288	zgc:123010	72	70.241	Cyprinodon_variegatus
ENSDARG00000039082	zgc:123010	55	40.000	ENSCVAG00000004187	-	56	36.620	Cyprinodon_variegatus
ENSDARG00000039082	zgc:123010	64	35.159	ENSEBUG00000001368	-	59	35.159	Eptatretus_burgeri
ENSDARG00000039082	zgc:123010	99	62.705	ENSELUG00000022008	zgc:123010	94	62.805	Esox_lucius
ENSDARG00000039082	zgc:123010	76	59.151	ENSELUG00000021447	-	76	59.151	Esox_lucius
ENSDARG00000039082	zgc:123010	94	30.418	ENSELUG00000001633	-	64	32.367	Esox_lucius
ENSDARG00000039082	zgc:123010	58	34.967	ENSELUG00000002009	si:dkey-33c12.4	87	35.082	Esox_lucius
ENSDARG00000039082	zgc:123010	98	63.299	ENSFHEG00000002306	zgc:123010	73	68.783	Fundulus_heteroclitus
ENSDARG00000039082	zgc:123010	68	31.510	ENSFHEG00000005521	si:dkey-33c12.4	56	31.250	Fundulus_heteroclitus
ENSDARG00000039082	zgc:123010	75	68.919	ENSGMOG00000018473	zgc:123010	99	68.919	Gadus_morhua
ENSDARG00000039082	zgc:123010	61	30.864	ENSGALG00000036747	TTC31	59	30.864	Gallus_gallus
ENSDARG00000039082	zgc:123010	98	62.917	ENSGAFG00000009373	zgc:123010	92	58.038	Gambusia_affinis
ENSDARG00000039082	zgc:123010	75	70.161	ENSGACG00000007620	zgc:123010	99	70.161	Gasterosteus_aculeatus
ENSDARG00000039082	zgc:123010	66	36.137	ENSGACG00000004936	-	97	36.137	Gasterosteus_aculeatus
ENSDARG00000039082	zgc:123010	68	31.218	ENSHBUG00000010735	si:dkey-33c12.4	80	31.218	Haplochromis_burtoni
ENSDARG00000039082	zgc:123010	99	50.101	ENSHBUG00000016720	-	75	53.470	Haplochromis_burtoni
ENSDARG00000039082	zgc:123010	71	33.333	ENSIPUG00000005998	si:dkey-33c12.4	62	33.333	Ictalurus_punctatus
ENSDARG00000039082	zgc:123010	98	64.549	ENSKMAG00000021350	zgc:123010	71	72.432	Kryptolebias_marmoratus
ENSDARG00000039082	zgc:123010	78	39.241	ENSKMAG00000006468	-	52	39.241	Kryptolebias_marmoratus
ENSDARG00000039082	zgc:123010	61	31.373	ENSKMAG00000016610	si:dkey-33c12.4	54	30.056	Kryptolebias_marmoratus
ENSDARG00000039082	zgc:123010	64	36.145	ENSLBEG00000028046	-	51	36.145	Labrus_bergylta
ENSDARG00000039082	zgc:123010	99	52.490	ENSLBEG00000013518	-	74	56.267	Labrus_bergylta
ENSDARG00000039082	zgc:123010	98	68.058	ENSLBEG00000023984	zgc:123010	92	67.850	Labrus_bergylta
ENSDARG00000039082	zgc:123010	59	43.333	ENSLBEG00000021088	-	51	37.811	Labrus_bergylta
ENSDARG00000039082	zgc:123010	60	36.858	ENSLACG00000004602	-	71	35.162	Latimeria_chalumnae
ENSDARG00000039082	zgc:123010	91	52.715	ENSLACG00000009001	zgc:123010	79	58.739	Latimeria_chalumnae
ENSDARG00000039082	zgc:123010	78	62.341	ENSLOCG00000008967	zgc:123010	77	62.341	Lepisosteus_oculatus
ENSDARG00000039082	zgc:123010	61	35.072	ENSLOCG00000001861	-	64	33.095	Lepisosteus_oculatus
ENSDARG00000039082	zgc:123010	68	59.752	ENSMAMG00000003439	-	91	59.752	Mastacembelus_armatus
ENSDARG00000039082	zgc:123010	68	58.841	ENSMAMG00000003394	-	91	58.841	Mastacembelus_armatus
ENSDARG00000039082	zgc:123010	72	58.739	ENSMAMG00000002460	-	85	58.739	Mastacembelus_armatus
ENSDARG00000039082	zgc:123010	81	30.573	ENSMAMG00000004311	-	52	30.573	Mastacembelus_armatus
ENSDARG00000039082	zgc:123010	72	69.688	ENSMAMG00000001145	zgc:123010	85	69.688	Mastacembelus_armatus
ENSDARG00000039082	zgc:123010	72	58.739	ENSMAMG00000002377	-	81	58.739	Mastacembelus_armatus
ENSDARG00000039082	zgc:123010	80	51.843	ENSMZEG00005014740	-	95	53.470	Maylandia_zebra
ENSDARG00000039082	zgc:123010	100	64.919	ENSMZEG00005027733	zgc:123010	71	72.603	Maylandia_zebra
ENSDARG00000039082	zgc:123010	68	31.139	ENSMZEG00005014276	si:dkey-33c12.4	68	36.719	Maylandia_zebra
ENSDARG00000039082	zgc:123010	97	63.983	ENSMMOG00000010544	zgc:123010	78	68.120	Mola_mola
ENSDARG00000039082	zgc:123010	72	50.700	ENSMMOG00000017955	-	85	50.700	Mola_mola
ENSDARG00000039082	zgc:123010	98	66.736	ENSMALG00000017698	zgc:123010	93	66.736	Monopterus_albus
ENSDARG00000039082	zgc:123010	61	32.670	ENSMALG00000002265	si:dkey-33c12.4	59	32.267	Monopterus_albus
ENSDARG00000039082	zgc:123010	97	61.884	ENSNBRG00000021157	zgc:123010	82	69.613	Neolamprologus_brichardi
ENSDARG00000039082	zgc:123010	100	63.074	ENSONIG00000018353	zgc:123010	74	70.137	Oreochromis_niloticus
ENSDARG00000039082	zgc:123010	59	56.954	ENSONIG00000000297	-	99	56.954	Oreochromis_niloticus
ENSDARG00000039082	zgc:123010	62	38.305	ENSONIG00000012263	-	99	37.580	Oreochromis_niloticus
ENSDARG00000039082	zgc:123010	54	41.117	ENSONIG00000007538	-	97	40.316	Oreochromis_niloticus
ENSDARG00000039082	zgc:123010	64	37.989	ENSORLG00000029651	si:dkey-33c12.4	59	30.263	Oryzias_latipes
ENSDARG00000039082	zgc:123010	91	63.239	ENSORLG00000007675	zgc:123010	91	64.368	Oryzias_latipes
ENSDARG00000039082	zgc:123010	91	63.457	ENSORLG00020003457	zgc:123010	91	64.598	Oryzias_latipes_hni
ENSDARG00000039082	zgc:123010	64	37.989	ENSORLG00020008750	si:dkey-33c12.4	55	30.263	Oryzias_latipes_hni
ENSDARG00000039082	zgc:123010	100	65.988	ENSORLG00015008373	zgc:123010	94	64.562	Oryzias_latipes_hsok
ENSDARG00000039082	zgc:123010	100	65.331	ENSOMEG00000003408	zgc:123010	92	65.971	Oryzias_melastigma
ENSDARG00000039082	zgc:123010	98	58.246	ENSPKIG00000015521	zgc:123010	88	57.708	Paramormyrops_kingsleyae
ENSDARG00000039082	zgc:123010	95	31.845	ENSPKIG00000011819	-	63	33.902	Paramormyrops_kingsleyae
ENSDARG00000039082	zgc:123010	84	60.099	ENSPMGG00000020251	zgc:123010	86	60.686	Periophthalmus_magnuspinnatus
ENSDARG00000039082	zgc:123010	53	40.234	ENSPMAG00000009352	-	94	39.068	Petromyzon_marinus
ENSDARG00000039082	zgc:123010	59	47.670	ENSPMAG00000004544	zgc:123010	100	47.670	Petromyzon_marinus
ENSDARG00000039082	zgc:123010	69	35.714	ENSPFOG00000017092	-	62	35.714	Poecilia_formosa
ENSDARG00000039082	zgc:123010	98	63.542	ENSPFOG00000001073	zgc:123010	92	62.708	Poecilia_formosa
ENSDARG00000039082	zgc:123010	98	63.125	ENSPLAG00000007711	zgc:123010	74	66.839	Poecilia_latipinna
ENSDARG00000039082	zgc:123010	98	63.542	ENSPMEG00000005092	zgc:123010	92	62.708	Poecilia_mexicana
ENSDARG00000039082	zgc:123010	50	38.095	ENSPMEG00000009905	-	56	35.714	Poecilia_mexicana
ENSDARG00000039082	zgc:123010	72	65.230	ENSPREG00000019587	zgc:123010	79	65.230	Poecilia_reticulata
ENSDARG00000039082	zgc:123010	72	51.058	ENSPNYG00000023304	-	87	50.794	Pundamilia_nyererei
ENSDARG00000039082	zgc:123010	68	31.139	ENSPNYG00000018262	si:dkey-33c12.4	68	36.719	Pundamilia_nyererei
ENSDARG00000039082	zgc:123010	100	65.253	ENSPNYG00000007893	zgc:123010	71	72.802	Pundamilia_nyererei
ENSDARG00000039082	zgc:123010	71	33.333	ENSPNAG00000018386	si:dkey-33c12.4	62	33.333	Pygocentrus_nattereri
ENSDARG00000039082	zgc:123010	100	73.196	ENSPNAG00000007579	zgc:123010	94	73.542	Pygocentrus_nattereri
ENSDARG00000039082	zgc:123010	71	34.074	ENSSFOG00015009199	-	65	34.074	Scleropages_formosus
ENSDARG00000039082	zgc:123010	99	55.691	ENSSFOG00015021394	zgc:123010	80	60.156	Scleropages_formosus
ENSDARG00000039082	zgc:123010	61	36.449	ENSSFOG00015005186	-	62	34.853	Scleropages_formosus
ENSDARG00000039082	zgc:123010	75	55.645	ENSSMAG00000021096	-	73	55.645	Scophthalmus_maximus
ENSDARG00000039082	zgc:123010	100	66.333	ENSSMAG00000002904	zgc:123010	92	66.736	Scophthalmus_maximus
ENSDARG00000039082	zgc:123010	100	66.667	ENSSDUG00000008651	zgc:123010	94	66.667	Seriola_dumerili
ENSDARG00000039082	zgc:123010	50	31.290	ENSSDUG00000010976	-	50	31.290	Seriola_dumerili
ENSDARG00000039082	zgc:123010	77	58.808	ENSSDUG00000014026	-	75	58.808	Seriola_dumerili
ENSDARG00000039082	zgc:123010	82	31.378	ENSSLDG00000009448	si:dkey-33c12.4	79	30.946	Seriola_lalandi_dorsalis
ENSDARG00000039082	zgc:123010	50	31.290	ENSSLDG00000012846	-	52	31.290	Seriola_lalandi_dorsalis
ENSDARG00000039082	zgc:123010	98	67.775	ENSSLDG00000019386	zgc:123010	92	67.775	Seriola_lalandi_dorsalis
ENSDARG00000039082	zgc:123010	98	67.568	ENSSPAG00000013621	zgc:123010	92	67.635	Stegastes_partitus
ENSDARG00000039082	zgc:123010	61	32.000	ENSSPAG00000022577	-	56	30.628	Stegastes_partitus
ENSDARG00000039082	zgc:123010	50	37.405	ENSTRUG00000000057	-	59	34.483	Takifugu_rubripes
ENSDARG00000039082	zgc:123010	86	63.403	ENSTRUG00000024824	zgc:123010	71	69.337	Takifugu_rubripes
ENSDARG00000039082	zgc:123010	50	38.494	ENSTNIG00000001154	-	100	38.494	Tetraodon_nigroviridis
ENSDARG00000039082	zgc:123010	61	38.225	ENSTNIG00000010542	-	91	38.225	Tetraodon_nigroviridis
ENSDARG00000039082	zgc:123010	67	65.653	ENSTNIG00000001303	zgc:123010	100	65.653	Tetraodon_nigroviridis
ENSDARG00000039082	zgc:123010	61	52.613	ENSXETG00000033896	-	100	52.613	Xenopus_tropicalis
ENSDARG00000039082	zgc:123010	72	65.312	ENSXCOG00000012281	zgc:123010	83	65.312	Xiphophorus_couchianus
ENSDARG00000039082	zgc:123010	98	61.458	ENSXMAG00000002598	zgc:123010	74	66.839	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function