EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000039213 (Gene tree)
Gene ID: 445089
Gene Symbol: prpf38a
Alias: fa04h11|fc83e08|wu:fa04h11|wu:fc83e08|zgc:92059
Full Name: pre-mRNA processing factor 38A
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 4868 bases
Position: chr6:33926829-33931696
Accession: ZDB-GENE-040801-225
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000057289	PRP38	PF03371.15	7.3e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000057290	-	1308	-	ENSDARP00000057289	313 (aa)	-	Q6DHU4

Gene Model

Click here to download ENSDARG00000039213's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000039213's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000039213	prpf38a	100	81.789	ENSG00000134748	PRPF38A	100	81.789	Homo_sapiens
ENSDARG00000039213	prpf38a	100	92.652	ENSAPOG00000011652	prpf38a	100	84.345	Acanthochromis_polyacanthus
ENSDARG00000039213	prpf38a	100	81.789	ENSAMEG00000009319	PRPF38A	100	81.789	Ailuropoda_melanoleuca
ENSDARG00000039213	prpf38a	72	89.823	ENSACIG00000012292	prpf38a	74	89.823	Amphilophus_citrinellus
ENSDARG00000039213	prpf38a	100	92.652	ENSAOCG00000018004	prpf38a	100	84.345	Amphiprion_ocellaris
ENSDARG00000039213	prpf38a	100	92.652	ENSAPEG00000021414	prpf38a	100	84.345	Amphiprion_percula
ENSDARG00000039213	prpf38a	71	91.403	ENSATEG00000004608	prpf38a	100	82.428	Anabas_testudineus
ENSDARG00000039213	prpf38a	79	78.226	ENSAPLG00000005827	PRPF38A	99	78.226	Anas_platyrhynchos
ENSDARG00000039213	prpf38a	100	80.831	ENSACAG00000008249	PRPF38A	100	80.831	Anolis_carolinensis
ENSDARG00000039213	prpf38a	100	81.789	ENSANAG00000027839	PRPF38A	100	81.789	Aotus_nancymaae
ENSDARG00000039213	prpf38a	100	55.521	ENSANAG00000029204	-	100	55.521	Aotus_nancymaae
ENSDARG00000039213	prpf38a	71	91.855	ENSACLG00000021595	prpf38a	100	83.706	Astatotilapia_calliptera
ENSDARG00000039213	prpf38a	100	95.527	ENSAMXG00000029274	prpf38a	100	95.527	Astyanax_mexicanus
ENSDARG00000039213	prpf38a	100	81.789	ENSBTAG00000002720	PRPF38A	100	81.789	Bos_taurus
ENSDARG00000039213	prpf38a	62	63.590	WBGene00008380	prp-38	59	65.426	Caenorhabditis_elegans
ENSDARG00000039213	prpf38a	100	81.789	ENSCJAG00000021594	PRPF38A	100	81.789	Callithrix_jacchus
ENSDARG00000039213	prpf38a	100	81.789	ENSCAFG00000003740	PRPF38A	100	81.789	Canis_familiaris
ENSDARG00000039213	prpf38a	100	81.789	ENSCAFG00020010939	PRPF38A	100	81.789	Canis_lupus_dingo
ENSDARG00000039213	prpf38a	100	81.789	ENSCHIG00000024730	PRPF38A	100	81.789	Capra_hircus
ENSDARG00000039213	prpf38a	100	81.789	ENSTSYG00000009868	-	100	81.789	Carlito_syrichta
ENSDARG00000039213	prpf38a	86	78.519	ENSTSYG00000031994	-	95	78.519	Carlito_syrichta
ENSDARG00000039213	prpf38a	100	82.109	ENSCPOG00000005079	PRPF38A	100	81.789	Cavia_porcellus
ENSDARG00000039213	prpf38a	100	80.831	ENSCCAG00000026502	PRPF38A	100	80.831	Cebus_capucinus
ENSDARG00000039213	prpf38a	100	81.789	ENSCATG00000032296	PRPF38A	100	81.789	Cercocebus_atys
ENSDARG00000039213	prpf38a	93	52.218	ENSCATG00000044190	-	57	55.319	Cercocebus_atys
ENSDARG00000039213	prpf38a	100	81.789	ENSCLAG00000005816	PRPF38A	100	81.789	Chinchilla_lanigera
ENSDARG00000039213	prpf38a	78	93.750	ENSCHOG00000008388	PRPF38A	77	93.750	Choloepus_hoffmanni
ENSDARG00000039213	prpf38a	100	80.831	ENSCPBG00000014791	PRPF38A	100	80.831	Chrysemys_picta_bellii
ENSDARG00000039213	prpf38a	100	56.550	ENSCSAVG00000009580	-	62	76.064	Ciona_savignyi
ENSDARG00000039213	prpf38a	74	87.446	ENSCANG00000032608	PRPF38A	74	88.235	Colobus_angolensis_palliatus
ENSDARG00000039213	prpf38a	100	81.789	ENSCGRG00001018502	-	100	81.789	Cricetulus_griseus_chok1gshd
ENSDARG00000039213	prpf38a	74	73.593	ENSCGRG00001002557	-	74	74.661	Cricetulus_griseus_chok1gshd
ENSDARG00000039213	prpf38a	100	81.789	ENSCGRG00000014868	Prpf38a	100	81.789	Cricetulus_griseus_crigri
ENSDARG00000039213	prpf38a	71	90.498	ENSCSEG00000001269	prpf38a	76	90.498	Cynoglossus_semilaevis
ENSDARG00000039213	prpf38a	71	94.118	ENSCVAG00000012305	prpf38a	100	84.026	Cyprinodon_variegatus
ENSDARG00000039213	prpf38a	100	81.789	ENSDNOG00000042326	PRPF38A	100	81.789	Dasypus_novemcinctus
ENSDARG00000039213	prpf38a	92	70.690	ENSDORG00000025371	-	76	79.091	Dipodomys_ordii
ENSDARG00000039213	prpf38a	92	70.690	ENSDORG00000023691	-	76	79.091	Dipodomys_ordii
ENSDARG00000039213	prpf38a	85	95.833	ENSDORG00000023857	-	100	95.833	Dipodomys_ordii
ENSDARG00000039213	prpf38a	65	71.707	FBgn0050342	Prp38	57	74.468	Drosophila_melanogaster
ENSDARG00000039213	prpf38a	76	79.916	ENSEBUG00000012588	prpf38a	71	79.372	Eptatretus_burgeri
ENSDARG00000039213	prpf38a	100	81.789	ENSEASG00005014427	PRPF38A	100	81.789	Equus_asinus_asinus
ENSDARG00000039213	prpf38a	100	81.789	ENSECAG00000022628	PRPF38A	100	81.789	Equus_caballus
ENSDARG00000039213	prpf38a	71	94.570	ENSELUG00000021094	prpf38a	100	84.984	Esox_lucius
ENSDARG00000039213	prpf38a	100	81.789	ENSFCAG00000002518	PRPF38A	100	81.789	Felis_catus
ENSDARG00000039213	prpf38a	99	72.930	ENSFALG00000003612	-	73	81.818	Ficedula_albicollis
ENSDARG00000039213	prpf38a	87	79.044	ENSFALG00000005598	-	100	79.044	Ficedula_albicollis
ENSDARG00000039213	prpf38a	100	81.789	ENSFDAG00000011287	PRPF38A	100	81.470	Fukomys_damarensis
ENSDARG00000039213	prpf38a	90	80.565	ENSFHEG00000014317	prpf38a	75	93.213	Fundulus_heteroclitus
ENSDARG00000039213	prpf38a	53	98.193	ENSGMOG00000011384	prpf38a	54	98.193	Gadus_morhua
ENSDARG00000039213	prpf38a	100	81.470	ENSGALG00000010627	PRPF38A	100	81.470	Gallus_gallus
ENSDARG00000039213	prpf38a	71	93.213	ENSGAFG00000012422	prpf38a	100	83.067	Gambusia_affinis
ENSDARG00000039213	prpf38a	71	90.583	ENSGACG00000005423	prpf38a	100	81.587	Gasterosteus_aculeatus
ENSDARG00000039213	prpf38a	100	80.831	ENSGAGG00000020547	PRPF38A	100	80.831	Gopherus_agassizii
ENSDARG00000039213	prpf38a	100	81.789	ENSGGOG00000003940	PRPF38A	100	81.789	Gorilla_gorilla
ENSDARG00000039213	prpf38a	60	95.238	ENSHBUG00000020572	prpf38a	80	95.213	Haplochromis_burtoni
ENSDARG00000039213	prpf38a	100	81.789	ENSHGLG00000000475	PRPF38A	100	81.789	Heterocephalus_glaber_female
ENSDARG00000039213	prpf38a	100	70.794	ENSHGLG00000007918	-	71	76.471	Heterocephalus_glaber_female
ENSDARG00000039213	prpf38a	100	81.789	ENSHGLG00100008935	PRPF38A	100	81.789	Heterocephalus_glaber_male
ENSDARG00000039213	prpf38a	100	70.794	ENSHGLG00100003928	-	71	76.471	Heterocephalus_glaber_male
ENSDARG00000039213	prpf38a	87	69.675	ENSHCOG00000020781	prpf38a	59	92.553	Hippocampus_comes
ENSDARG00000039213	prpf38a	90	81.625	ENSIPUG00000005757	prpf38a	100	92.926	Ictalurus_punctatus
ENSDARG00000039213	prpf38a	100	81.789	ENSSTOG00000015610	PRPF38A	100	81.789	Ictidomys_tridecemlineatus
ENSDARG00000039213	prpf38a	100	81.150	ENSJJAG00000015811	Prpf38a	100	81.150	Jaculus_jaculus
ENSDARG00000039213	prpf38a	71	93.665	ENSKMAG00000006588	prpf38a	100	83.706	Kryptolebias_marmoratus
ENSDARG00000039213	prpf38a	100	85.304	ENSLBEG00000020585	prpf38a	100	83.387	Labrus_bergylta
ENSDARG00000039213	prpf38a	100	82.428	ENSLACG00000011495	PRPF38A	100	82.428	Latimeria_chalumnae
ENSDARG00000039213	prpf38a	100	84.076	ENSLOCG00000006262	prpf38a	100	83.121	Lepisosteus_oculatus
ENSDARG00000039213	prpf38a	100	81.789	ENSLAFG00000025862	PRPF38A	100	81.789	Loxodonta_africana
ENSDARG00000039213	prpf38a	100	81.789	ENSMFAG00000039449	PRPF38A	100	81.789	Macaca_fascicularis
ENSDARG00000039213	prpf38a	87	79.412	ENSMMUG00000014333	PRPF38A	98	79.121	Macaca_mulatta
ENSDARG00000039213	prpf38a	93	52.901	ENSMNEG00000040242	-	57	56.915	Macaca_nemestrina
ENSDARG00000039213	prpf38a	100	81.789	ENSMNEG00000031221	PRPF38A	100	81.789	Macaca_nemestrina
ENSDARG00000039213	prpf38a	100	81.789	ENSMLEG00000041105	PRPF38A	100	81.789	Mandrillus_leucophaeus
ENSDARG00000039213	prpf38a	71	94.118	ENSMAMG00000015431	prpf38a	100	84.665	Mastacembelus_armatus
ENSDARG00000039213	prpf38a	71	91.855	ENSMZEG00005017838	prpf38a	100	83.387	Maylandia_zebra
ENSDARG00000039213	prpf38a	74	87.013	ENSMGAG00000011176	PRPF38A	74	87.783	Meleagris_gallopavo
ENSDARG00000039213	prpf38a	85	81.343	ENSMAUG00000018029	-	84	83.258	Mesocricetus_auratus
ENSDARG00000039213	prpf38a	100	81.789	ENSMICG00000014193	PRPF38A	100	81.789	Microcebus_murinus
ENSDARG00000039213	prpf38a	100	81.789	ENSMOCG00000013080	Prpf38a	100	81.789	Microtus_ochrogaster
ENSDARG00000039213	prpf38a	81	88.627	ENSMMOG00000016972	prpf38a	78	94.118	Mola_mola
ENSDARG00000039213	prpf38a	100	80.255	ENSMODG00000000644	PRPF38A	100	80.573	Monodelphis_domestica
ENSDARG00000039213	prpf38a	71	94.118	ENSMALG00000019363	prpf38a	97	84.345	Monopterus_albus
ENSDARG00000039213	prpf38a	100	81.470	MGP_CAROLIEiJ_G0026269	Prpf38a	100	81.470	Mus_caroli
ENSDARG00000039213	prpf38a	100	81.470	ENSMUSG00000063800	Prpf38a	100	81.470	Mus_musculus
ENSDARG00000039213	prpf38a	100	81.470	MGP_PahariEiJ_G0028602	Prpf38a	100	81.470	Mus_pahari
ENSDARG00000039213	prpf38a	100	81.789	MGP_SPRETEiJ_G0027238	Prpf38a	93	91.489	Mus_spretus
ENSDARG00000039213	prpf38a	100	81.789	ENSMPUG00000006896	PRPF38A	100	81.789	Mustela_putorius_furo
ENSDARG00000039213	prpf38a	100	81.789	ENSNGAG00000011884	Prpf38a	100	81.789	Nannospalax_galili
ENSDARG00000039213	prpf38a	72	90.708	ENSNBRG00000004013	prpf38a	73	90.708	Neolamprologus_brichardi
ENSDARG00000039213	prpf38a	93	53.242	ENSNLEG00000033398	-	94	52.716	Nomascus_leucogenys
ENSDARG00000039213	prpf38a	97	62.215	ENSNLEG00000012592	-	99	56.766	Nomascus_leucogenys
ENSDARG00000039213	prpf38a	93	81.034	ENSNLEG00000017999	PRPF38A	93	81.034	Nomascus_leucogenys
ENSDARG00000039213	prpf38a	100	78.594	ENSMEUG00000003860	PRPF38A	100	78.594	Notamacropus_eugenii
ENSDARG00000039213	prpf38a	73	87.719	ENSOPRG00000008985	PRPF38A	92	88.235	Ochotona_princeps
ENSDARG00000039213	prpf38a	100	81.789	ENSODEG00000005869	PRPF38A	100	81.789	Octodon_degus
ENSDARG00000039213	prpf38a	71	91.403	ENSONIG00000007816	prpf38a	100	83.067	Oreochromis_niloticus
ENSDARG00000039213	prpf38a	100	50.476	ENSOANG00000009541	-	100	50.476	Ornithorhynchus_anatinus
ENSDARG00000039213	prpf38a	100	81.789	ENSOCUG00000000963	PRPF38A	100	81.789	Oryctolagus_cuniculus
ENSDARG00000039213	prpf38a	99	85.897	ENSORLG00000013485	prpf38a	99	83.974	Oryzias_latipes
ENSDARG00000039213	prpf38a	99	85.897	ENSORLG00020002130	prpf38a	99	83.974	Oryzias_latipes_hni
ENSDARG00000039213	prpf38a	99	85.577	ENSORLG00015021393	prpf38a	99	83.654	Oryzias_latipes_hsok
ENSDARG00000039213	prpf38a	100	85.623	ENSOMEG00000016333	prpf38a	100	83.706	Oryzias_melastigma
ENSDARG00000039213	prpf38a	100	81.789	ENSOGAG00000005423	PRPF38A	100	81.789	Otolemur_garnettii
ENSDARG00000039213	prpf38a	100	81.789	ENSOARG00000005373	PRPF38A	100	81.789	Ovis_aries
ENSDARG00000039213	prpf38a	100	81.789	ENSPPAG00000030905	PRPF38A	100	81.789	Pan_paniscus
ENSDARG00000039213	prpf38a	93	67.797	ENSPPAG00000033867	-	100	65.176	Pan_paniscus
ENSDARG00000039213	prpf38a	100	81.789	ENSPPRG00000013268	PRPF38A	100	81.789	Panthera_pardus
ENSDARG00000039213	prpf38a	100	81.789	ENSPTIG00000015419	PRPF38A	100	81.789	Panthera_tigris_altaica
ENSDARG00000039213	prpf38a	100	81.789	ENSPTRG00000000739	PRPF38A	100	81.789	Pan_troglodytes
ENSDARG00000039213	prpf38a	100	81.789	ENSPANG00000015483	PRPF38A	100	81.789	Papio_anubis
ENSDARG00000039213	prpf38a	100	84.984	ENSPKIG00000011439	prpf38a	100	83.067	Paramormyrops_kingsleyae
ENSDARG00000039213	prpf38a	100	80.511	ENSPSIG00000017487	PRPF38A	100	80.511	Pelodiscus_sinensis
ENSDARG00000039213	prpf38a	78	83.197	ENSPMGG00000021352	prpf38a	78	90.708	Periophthalmus_magnuspinnatus
ENSDARG00000039213	prpf38a	100	74.763	ENSPEMG00000011212	-	100	75.556	Peromyscus_maniculatus_bairdii
ENSDARG00000039213	prpf38a	100	81.789	ENSPEMG00000023277	-	100	81.789	Peromyscus_maniculatus_bairdii
ENSDARG00000039213	prpf38a	100	79.936	ENSPCIG00000022369	-	100	80.255	Phascolarctos_cinereus
ENSDARG00000039213	prpf38a	100	83.861	ENSPFOG00000004248	prpf38a	100	83.067	Poecilia_formosa
ENSDARG00000039213	prpf38a	96	77.451	ENSPLAG00000010328	prpf38a	100	83.067	Poecilia_latipinna
ENSDARG00000039213	prpf38a	92	80.137	ENSPMEG00000011804	prpf38a	100	83.067	Poecilia_mexicana
ENSDARG00000039213	prpf38a	95	79.000	ENSPREG00000002835	prpf38a	58	96.277	Poecilia_reticulata
ENSDARG00000039213	prpf38a	100	74.214	ENSPPYG00000001348	PRPF38A	100	74.214	Pongo_abelii
ENSDARG00000039213	prpf38a	100	81.470	ENSPCAG00000013328	PRPF38A	100	81.470	Procavia_capensis
ENSDARG00000039213	prpf38a	100	81.789	ENSPCOG00000016387	-	100	81.789	Propithecus_coquereli
ENSDARG00000039213	prpf38a	100	65.815	ENSPCOG00000020709	-	73	74.208	Propithecus_coquereli
ENSDARG00000039213	prpf38a	100	81.789	ENSPVAG00000009803	PRPF38A	100	81.789	Pteropus_vampyrus
ENSDARG00000039213	prpf38a	71	91.855	ENSPNYG00000005571	prpf38a	100	83.387	Pundamilia_nyererei
ENSDARG00000039213	prpf38a	100	94.249	ENSPNAG00000010399	prpf38a	100	94.249	Pygocentrus_nattereri
ENSDARG00000039213	prpf38a	100	82.109	ENSRNOG00000009451	Prpf38a	100	82.109	Rattus_norvegicus
ENSDARG00000039213	prpf38a	100	81.789	ENSRBIG00000036442	PRPF38A	100	81.789	Rhinopithecus_bieti
ENSDARG00000039213	prpf38a	98	69.256	ENSRROG00000040003	-	72	72.398	Rhinopithecus_roxellana
ENSDARG00000039213	prpf38a	100	81.789	ENSRROG00000032788	PRPF38A	100	81.789	Rhinopithecus_roxellana
ENSDARG00000039213	prpf38a	100	81.789	ENSSBOG00000019515	PRPF38A	100	81.789	Saimiri_boliviensis_boliviensis
ENSDARG00000039213	prpf38a	87	77.574	ENSSHAG00000006906	-	100	77.941	Sarcophilus_harrisii
ENSDARG00000039213	prpf38a	77	72.083	ENSSHAG00000006029	-	74	75.113	Sarcophilus_harrisii
ENSDARG00000039213	prpf38a	100	84.713	ENSSFOG00015013572	prpf38a	100	82.166	Scleropages_formosus
ENSDARG00000039213	prpf38a	71	93.665	ENSSMAG00000015379	prpf38a	99	83.601	Scophthalmus_maximus
ENSDARG00000039213	prpf38a	71	95.023	ENSSDUG00000001324	prpf38a	100	85.304	Seriola_dumerili
ENSDARG00000039213	prpf38a	71	95.023	ENSSLDG00000014803	prpf38a	100	85.304	Seriola_lalandi_dorsalis
ENSDARG00000039213	prpf38a	100	65.176	ENSSARG00000014458	PRPF38A	100	65.176	Sorex_araneus
ENSDARG00000039213	prpf38a	100	80.831	ENSSPUG00000013259	PRPF38A	100	80.831	Sphenodon_punctatus
ENSDARG00000039213	prpf38a	72	75.221	ENSSPAG00000010449	prpf38a	68	74.661	Stegastes_partitus
ENSDARG00000039213	prpf38a	100	81.789	ENSSSCG00000028288	PRPF38A	100	81.789	Sus_scrofa
ENSDARG00000039213	prpf38a	100	77.636	ENSTGUG00000008995	PRPF38A	100	77.636	Taeniopygia_guttata
ENSDARG00000039213	prpf38a	71	92.760	ENSTRUG00000003374	prpf38a	68	92.760	Takifugu_rubripes
ENSDARG00000039213	prpf38a	71	90.583	ENSTNIG00000005533	prpf38a	100	81.905	Tetraodon_nigroviridis
ENSDARG00000039213	prpf38a	100	81.150	ENSTBEG00000000725	PRPF38A	100	81.150	Tupaia_belangeri
ENSDARG00000039213	prpf38a	100	81.789	ENSTTRG00000016139	PRPF38A	100	81.789	Tursiops_truncatus
ENSDARG00000039213	prpf38a	100	81.789	ENSUAMG00000000625	PRPF38A	100	81.789	Ursus_americanus
ENSDARG00000039213	prpf38a	100	81.789	ENSUMAG00000022674	PRPF38A	100	81.789	Ursus_maritimus
ENSDARG00000039213	prpf38a	74	87.013	ENSVPAG00000000907	PRPF38A	71	87.783	Vicugna_pacos
ENSDARG00000039213	prpf38a	100	81.789	ENSVVUG00000004475	PRPF38A	100	81.789	Vulpes_vulpes
ENSDARG00000039213	prpf38a	100	81.210	ENSXETG00000008060	prpf38a	100	76.433	Xenopus_tropicalis
ENSDARG00000039213	prpf38a	72	91.228	ENSXCOG00000007393	prpf38a	75	91.228	Xiphophorus_couchianus
ENSDARG00000039213	prpf38a	71	93.213	ENSXMAG00000026143	prpf38a	100	83.067	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0071011	precatalytic spliceosome	21873635.	IBA	Component