EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000039350 (Gene tree)
Gene ID: 550504
Gene Symbol: ssbp1
Alias: zgc:110325
Full Name: single-stranded DNA binding protein 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 3728
Position: chr4: 4752622-4756349
Accession: ZDB-GENE-050417-340
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000057507	-	1037	-	ENSDARP00000057506	146 (aa)	-	B8A5I7
ENSDART00000193929	-	441	-	ENSDARP00000157021	146 (aa)	-	B8A5I7

Gene Model

Click here to download ENSDARG00000039350's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03030	DNA replication	KEGG
dre03430	Mismatch repair	KEGG
dre03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000039350's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000039350	ssbp1	81	30.000	WBGene00019800	mtss-1	66	30.000	Caenorhabditis_elegans
ENSDARG00000039350	ssbp1	80	43.590	FBgn0010438	mtSSB	80	42.742	Drosophila_melanogaster
ENSDARG00000039350	ssbp1	100	72.789	ENSG00000106028	SSBP1	100	75.556	Homo_sapiens
ENSDARG00000039350	ssbp1	100	74.150	ENSMUSG00000029911	Ssbp1	99	74.150	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006264	mitochondrial DNA replication	21873635.	IBA	Process
GO:0009295	nucleoid	21873635.	IBA	Component
GO:0042645	mitochondrial nucleoid	21873635.	IBA	Component
GO:0051096	positive regulation of helicase activity	21873635.	IBA	Process